NONHSAT075590
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT075590 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3076 nt |
Genomic location |
chr2+:175870117..175873192 |
Exon number |
1 |
Exons |
175870117..175873192 |
Genome context |
|
Sequence |
000001 GCCGCGCCGC TGCCTCCCGC CTCTCCCTCG GGCTTCCCGG TCGAGTGCGT TCCCATGGCA ACGGGCGCGC GCGGGGGTAA 000080
000081 GAGGGTGCGC CCTCATTCCC GCGGCTGCGA GGAGCCACCA GCGCCCCCCT GGAGGCGGCC GCCCGGAGCG GGATGGAGCG 000160 000161 GGGCCGGTGT GCGTTTTAGC TGAAAGCCCA GGTTTTTTCT TGAATGGAAT TTGAGGAGGC GCAGAGAGGA GAAAAACGCT 000240 000241 GTTACTCGAA AGAGGAAGAG TCACAGGAGG ATGCTGAGTG AACGCAGCGC CCAGGCAGGG TCATCTGGGG ACCTGGTGCG 000320 000321 TGTGAGAACA TATTTCTTCT CCTGGCGCCC TCCAGGCTCA CTGTGGCTGG AGCCGGTGAC CTGAAGCTGC AGGGCTCTGG 000400 000401 TAGGAACAGA GGCACTGAAA GCTGCATTCC TCTCCGTTTG GACTTAGGAG CTGCTAGTAG TTCTGATGAA ATTGACACAC 000480 000481 ATTAGGAAAA GGAGTCGCTT AAAAAGCATC TGAGATTACC TAAGATAATT TGTTAAAAGA CCAATGCTTA CACCTGATTT 000560 000561 TCTTCCCTTT ACATTATACC TCTTTGATAT TGTCTCAAGG AAAAAAAAAT CAGCATGTGT CACTGACTGG CACTTATTTG 000640 000641 CCACAAAAGA TTGTTCCCCT GAGCTTCTTG TATTTATCTG ATAATCACTG GCAACGTCCT CCTTTCTGTG ATGTTGTCTC 000720 000721 CTCACCTCTG TCTCTGCCAT GAGGAGCCAT ACAACGCCTT GAGATTGTCA GCCAAAAGAT GTTCTTGAAA AGCTGGGTTA 000800 000801 TATGTTTTTC GTCGTTGTCG TTTAATGTAT TCAAAAAGTC ATTCTTCTCT AGTTGCTATA TGTGTTCCCT GTTTAAGAAA 000880 000881 TTCCTTCTTT TTTCTTGTTT CTCTGCTTAG GGATTTGATA CTATTTTGGT ATCTGATCAT GTAGATCTTC TCTTTGGTTC 000960 000961 TCCTTTCTTT CTACAGGCGT CTTTCCTCTT AGTTCCTCAG GTTCCCTAGT GTCTTCTCTC CCATTTTCAA ATAATTCTTT 001040 001041 AAGAATATTA TAGAAATATC TTGTATTTAA TGTATCTTAG AGATCGAATC CTGATAAAGT GGGAGATTAC TACAGTACTT 001120 001121 CCAATGGAAC CACAGTTAAT TCACCATCAT TATTTCAAAG CAGACTTAAG CATCAGAAGA AAAGCAGGTT GGAAGGAGGA 001200 001201 GCCAAGCCTT TTGTTTCAAG TCAGTTAACT CAGGAAGAAA GAAATATTAA AATGATTCAA CATGAATGGG CAAGTGTTTA 001280 001281 AGATGCTATA TGTTTGGAAT TTTGTGATGT AAAATGGCTC TCTTTAGCCA CTAATCAAAA TACATCTTTA AAATCCCCAG 001360 001361 AATTTAAAAT CTTTCATGAA AATGGACTCT TGATTTTGAA CAACCTTTCT GCTCATAAAA AATTACAAAC ACACAGCTCA 001440 001441 TGAAAATAAA TGAGAAACTC AAGAAAGCTT TGTGGGATAG ATTTTATAAC CATATAAAGA TTGCTGCTAA TCTGCTCTGC 001520 001521 AGCCAAATAA ATCAGAAACC GAAGACTCCA TTTACTGTTT CAACTagtgg tcttcaacat ttttggacca aatttccttt 001600 001601 tgaggctcta atgaaaatac tgtccctcct cttagaaaag tgcttgcata catacacaca ttcaccggaa atttttcaca 001680 001681 taatttcaag gggattatgg gctattcagg gaccttaggt gagcccctgG AAGTGTTTTT TGTAATCTCA GAAAGTTTTT 001760 001761 GCCTTTATAA TTTAAAGGAA AATATTTTCC TTCAGAATAG AACCATTGAA TTTTGAATAG GAAAAGACCA AAACTCCCAT 001840 001841 GATTTATAGG TAAAAAAATT GAGTTCCCCG TAAAAAGATT TTCCCAAATG TGTTCACCTA TTTAGTAGCA GAACCAATGG 001920 001921 GAAAATCTTA GATTTCTGGT GTTCTCACCG ACCACCTTCC CTACCCACAT CCCGCATCAA TTTAGAGGTT GCATGGTTTG 002000 002001 AATTTCAAAA GAAAAATCTG TTTAGTATTA GAAGCAAAAT AACGAGAGTA TTTTGTCCTT AGCCATTCTG CATAGAGTTT 002080 002081 GGGAAGTTGC ATTTTGTCTC AAAGAGTTTT TATTAACATG CCCTTCTACT CAGAACTATG TGTCCCATCA TGCTAAAAGA 002160 002161 GAAACAATGC CTTTCTCTCC TCTTTGTTAA GCTCTGTTAG AGCATCAAGG TTTTGGTGCT GCAGCTCAGC TTGCTAGTAG 002240 002241 CTCTCTCCAT CCCTTGAGGG GTTGTCCTGG GAGTGAGACA GAGAGAAAGG AGCTGCCCTG CACTCAGATT TACCCTCCCA 002320 002321 TCATACAGCC GGCCTTTGGT TACTAGACCA GCTTTCCACT CACTAGTTTG GCCAAATACA ACTGAATCCT AGTGAAATAC 002400 002401 CCTGCTTAAA CTCAAGTGAA GATCCTTTTC CTCTCCCCTT TCTactcgca cacccacgta cacacacaca cacacaGCTG 002480 002481 TTTTTAAGGT ACAATTTGGA ACAAAACAGT GTGAATGTTG CTATGTTTCC CTTTAAAGCA TCCTGCTTTC CACGAGCCAT 002560 002561 TCCTTTCAAC TGACTTCCAA ATGGTTTGAT GCTCTAACAA AATGCTCTCT ATACTTGATC AAAGTGCCTG TCTTGGAAAT 002640 002641 AGTATTGGCT TTTAAAATAG CGTATTTTTT TCAATGAGCT ATTCCTATTC TATTGCATGT GCTTCTTTTC TCACTTAGCT 002720 002721 GAAAATAAAG CCACAGCCTT TCAGCTACAG AGTCAATGCA AGGAAGGGCG TTAACTGCTT GGAGGTGATT ATTACGGGTG 002800 002801 GTGACTTAGA TTGTTTATAA AAGAAGGGCA AAGAATGAAT TGACTTCTCA AAATATTTAT GTTTTCATTC AATGATTTCA 002880 002881 TTTTGTGCTT AACATGCAAG TGCTTAGAAG AGCCAGATTT GTTTATTCgt tactaactag ctgtcagatt tttagacaaa 002960 002961 tgttttactg tttctagttc ttatcttcct cctttgtaaa atgaaaggat ggtactaagg tatctctaat gtccctttta 003040 003041 ggtttatctg tcattgtgtg atATTTTAAA ATCTTT |
Predicted Small Protein
Name | NONHSAT075590_smProtein_1439:1717 |
Length | 93 |
Molecular weight | 10751.6207 |
Aromaticity | 0.119565217391 |
Instability index | 40.0359782609 |
Isoelectric point | 9.74627685547 |
Runs | 11 |
Runs residual | 0.0156396621833 |
Runs probability | 0.0398500104383 |
Amino acid sequence | MKINEKLKKALWDRFYNHIKIAANLLCSQINQKPKTPFTVSTSGLQHFWTKFPFEALMKI LSLLLEKCLHTYTHSPEIFHIISRGLWAIQGP |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLEEEELLLLHHHHHLLLHHHHHHH HHHHHHHHHHHLLLLHHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |