NONHSAT075744
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT075744 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2779 nt |
Genomic location |
chr2+:179278672..179300598 |
Exon number |
3 |
Exons |
179278672..179278840,179295497..179295616,179298109..179300598 |
Genome context |
|
Sequence |
000001 GATTTAACAG CTTTTGTTTT GGGCAGAAGA ACCTATGGGC ACAAAAAGCA GGAACGAGTA GCGGTGGCTG AAGAACGAGC 000080
000081 AGGAGCTTGA ATTTCAGTTT TCTTATGAGG AATTTTCCAG AAAAGATATC TTCACTGTGA AATAACTAAA TAAATGCCCA 000160 000161 CTCAGTACAC TTTCCCTGCA CTCCAAACAC AGAGCTGAGA CTTCCACCTA ATGTAGAAAG CTAGCACGAG CCGGCGCTGA 000240 000241 CAGATGGAAG ACTTGAGATG TTACAAGATT ATATATGGAA ACACAAAAGg agtggagttg ctgggtcata tggcaattca 000320 000321 tttgaggaac tgagaagctt attccatgga ggctgaactg ttttatattc ccaccagcaa cgtgtaaggt tccagtttat 000400 000401 ctacatcatc accaacactt gctattttcc atttcattaa tgatagccat cctagtggat ttgaagtggt accttattat 000480 000481 cgtggttttg attgcattct ctattgacta atgatatcga gcatcttttc atgtattttt tggtcatttg gtcatttttc 000560 000561 ttttttaatt ttaaaatttt gagacaggct ctcactatgt tgcccaggtg gtctcaaact cctgggttcc agcgatgctc 000640 000641 atgcctcagt ctcccaaagg ggtgggatta caggtgtgag ccactttgcc cagcccattt gtatatctcc tttggagaat 000720 000721 atctaGGTTC TTTTGAAGGT AGCTGCATAT AAACTAGCCA AATTAACAGA CTGTGGTTTT TAGATGGCTT TCCATATCTA 000800 000801 CAAGAACTAT TTAGTTCTCA AAACTGGGAA GAAATGTTTC AGAGGCATCA TTAATTCATA ATCTAAAAAT TTATCTTGGG 000880 000881 TTTCCTTTTT TCCCCCAGAT tctgtatcct ccatagtcct attcatgaca tgggtcgttc atctctgtat tctaaaccct 000960 000961 caatgaactg tagacagtaa taaatattta ttggatgaat gGTCTCTCAT CAGCCACCtt ttcttttttt ttttttgaga 001040 001041 cagagtctca ctctgtcact caggctggag tgcagtggcg cgatctcggt tcactgcaac ctctgcctcc cgggttcaag 001120 001121 tgattctccc acctgagcct cccgagtagc tgggattaca ggtgcacgcc accttgtctg gctaattttt gtatttttag 001200 001201 tagagacagg gtttcaccgt gttggtcagg ctggtctcaa acgcctgacc tcaggtgatc tgcccgactt ggcctcccaa 001280 001281 agtgctggga ttacaggtgt gagccaccgc acctggccTC CAGCCTCttt tctttttttt ttttgagaca agtctaactc 001360 001361 tgtcacccag gctggagagc agcggcatga tcatggctca ctgctgcctc aacctcagag gctcaagtca ttgtccccac 001440 001441 ctcagcctcc ctagtagact ggactacagg catgtgccac cacacccagc taatttttCA TCAGCCACCT TTTCTAACCA 001520 001521 TCTGTCTGCA CTGACTTCCC AGGTTCTGCA TCATTATTGG TTTACTGAGA CAATGCACTT CACCCGTCCT TCAATCCCAA 001600 001601 AGTAGCACAG AATATCAGGA GTTCTTTGAG CCCCTAAGTG CCCTACTTTC CCAGGGTCAG GGGACCCTGA CAAGCAAGGT 001680 001681 CCCCACATCT TTCTGTGGTT GGATAGGGAT ATAAAATTTC TCACACATGT TAAATCAAGA TACTTTggcc aggcacggtg 001760 001761 gctcacacct gtaatcccag cactttggga ggctgaggtg tacagatcac ttgaggtcag gagtttgaga caagcctggt 001840 001841 caacatggtg aaactcccat ctctactaaa aaaaaaaaaa ctttgggagg ccgaggtggg tggatcatga ggtcaggagt 001920 001921 ttgagaccag cctggccaac atggtgaaac cccgtctcta ctaaaaatgc aaaaattagg tgggtgtggt ggcacacagc 002000 002001 agtagtccca gctactcagg aggctgaggc aggagaattg cttgaacctg ggaggcagag gttacagtga gctgagatca 002080 002081 tgccaccgca ctccaaccag ggcaacagat caagactcca tcttggggaa aaaaaaaaaa attagccagg cttggtggtg 002160 002161 gatgcctgta ttcccagctt cttgggagac tgaagcagga ggatcgcttg aacccaggag gcagaggttg cagtgagttg 002240 002241 agattgtgcc actgtactcc agcctgggca acagaaacaa tactccgtct caaaaaaaaa aaaaaaaaaa aaaaaTCAAG 002320 002321 ACACCAAACA CACACAACTA ATTAGCTCTA TAAATTGAAT TAAAAGAAAA TCCATACTGA CTTGCTTTCC CATCTGTCCA 002400 002401 TATTTGTCTA TCCAAATGAT TAAGGGCTAG AGAAAATACA GATGATGATG GCTGAGATGG GATAAAACTA TAAATTGACT 002480 002481 TGGTTCCATT TACCTCCCAG AATCAGCATA CAGTGACAAA GTAGAGAGAA AAGGTCTGGG CACCACAAAC TTGTACTTGT 002560 002561 GCTAGAAATG TAGGTGCCTT TTCATTTGCC CAGCAGGGCT AGTTTAACAG CCAGGGTATC TTCTGGGACT CTTCCCcaaa 002640 002641 tcttgctcta ccgctgacta gctatgtgat cttgggcaag tttctcaacc tttctgtgcc tttcttcctt tacttataaa 002720 002721 taaggataac agaatttgct tcatagagtt agtctgagga ttcagtaagt agatacgtg |
Predicted Small Protein
Name | NONHSAT075744_smProtein_530:751 |
Length | 74 |
Molecular weight | 8646.0718 |
Aromaticity | 0.219178082192 |
Instability index | 45.9698630137 |
Isoelectric point | 8.35028076172 |
Runs | 12 |
Runs residual | 0.0202386212992 |
Runs probability | 0.04491991992 |
Amino acid sequence | MYFLVIWSFFFFNFKILRQALTMLPRWSQTPGFQRCSCLSLPKGWDYRCEPLCPAHLYIS FGEYLGSFEGSCI |
Secondary structure | LEEEEEHHHHHHLHHHHHHHHHHLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLLEEEEE ELHHHLLLLLLLL |
PRMN | HHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLL |
PiMo | i??????????????????????????????????????????????????????????? ????????????? |