NONHSAT075862

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT075862

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3865 nt

Genomic location

chr2-:181970580..182309557

Exon number

12

Exons

181970580..181970695,181988623..181988706,181991894..181992422,181993130..181993574,182028673..182029275,182141401..182141798,182227414..182227645,182243183..182243564,182263065..182263392,182270930..182271382,182286881..182287119,182309501..182309557

Genome context

Sequence
000001 AAACTGCTAC ACAACGGTGT TTTACCGCAA GATTCTCATA CACATGGCTT CATCTTGAGC CATGGGGCTT GGAATCTATT 000080
000081 TAGATCAATA CACAAGGCAG AAAGGACAAG ACCCAGTTGC TGAACTGAAA CAACTGATTC CATTGGTAGT CTCTCTATCA 000160
000161 GCACCAAACC TGGAAATGCC ACTCCTCAAG AAAAAGACCA CCAATCCAAG CACCTTTCTA AAATCACTTA GTGGAGGCCT 000240
000241 GAATCTTGTA AGAAAACTAA CTTAGAGTTT CTGCATTTAC AAATAAAATT TCTTTTCAAT GGATAGGTGA GTAGAAGAGA 000320
000321 GAGTACATGA GATCATTCAA AAGACAGTCA CCTAGACCAG AGACTAAGGT AGGGACCATA TTAAATAATA GATGGGTAAA 000400
000401 TAGGTATATA GATAGACAGA AAGATACATA GGTATAAACA AAACCATCTT AATTCTTCTG AGAGTTGCTG GCAAGTGAAA 000480
000481 AGAATCAGTT TTGGCTCCAG ATGTAAATAT GGGGAAAAAG AGAAATTATG TGTTGAAACT GACAGATTGC TCACTTCAAA 000560
000561 AAGATGAAAT TTGTTATATT GTAACCCAAT GAGAGAGAAG TCAGTCTCTG GAGAGGTCAA TTCTATTTGT TCTCAAGAAA 000640
000641 TTCACTGAGA TTTGAAGGAT TAGTGTAGAA AGGAGTGTTA TTCATGACAG GAAGCTTTTG GTATTCTTCC TAATACCTGA 000720
000721 GGAACAGACC AAATCTTCTT GCTTGTTCCT TTTTCAATCC CAAAGCAGAT GTCGTCTCTC AGCTCTGCCC TGATGTGCAA 000800
000801 TTTTATAGTT TTCCTGGGTC TCTAACTGGT GCTATAATAA ATTCAGAGTA ATTGTTACAC ACCTTTAACA GCTTCAAAAC 000880
000881 ACATTTAAGG TATTTTCTTA TTAATTAACT TTCTCCTCAT ATCAGCAAAA GCAGTTTGCT TTAAAAAGTT CCTTGGTAAC 000960
000961 AGTAGTCTAG TTTCTTGCCG TCACTCAGAA ACTTGAGAAG ATTCTTTTGA TGTTGGTCTC TCAGTTTAGG ATGAAACTAG 001040
001041 TGGAAAGAAG ATAGTGAAAG AGTAAGCGGA ATTGAGTGAT GGCAGCATGA ACTCAGCTGG GCCCCGTGGT CCTCAGCCCA 001120
001121 GCCCTCGGCA GAAGCAGTGA ATTCAGCCAT AACTACAGCA GAGTCTGATC ATTCTCCTGA TGAAATTACA CTGATCTAAT 001200
001201 TTGCACGCTG TGAAGACATT TGGCACTGGC TGGATCTGAG CCTTGACATC TTCATTGGAA CTAAAAGTAC ACTAAGAACT 001280
001281 GACATTACGT TTCACATTCT TTTCTGCCAG GCTGTGGCAT TTCATCCTCT TTAAAGGCAT TATTTCAAGA ACATTTAATT 001360
001361 TGGCTTTGAT ATGCCTGCCA TTTTGCTGGG TGGAACATAC TGCGCCAGAA AAGCTCAGCT GTAATAAAGT TTGGCACCAA 001440
001441 CAGCTCACCA TATACCTGCC TCTGAGTTGG AGTAATTTCC TTAATTTTAA TATCACAAAC ATTTTCTTTC CATCATTCTT 001520
001521 TTCATCATGT GATTCTGGAA CTGAGCTTGG CAAAGCGTGA GTCTAAAGGT ACTTCCAGTT TGCTTGGCTG GTTAGGCTAT 001600
001601 GGTCCTTTGC AGTATCATTC ATGTCACTTA TTTACAGTGG TCCCTCTTAT CTGCAGTTTC ACTTTCCGCA GTTTCAGTTA 001680
001681 CCTGCAGTCA ATGTAAGATA TCTTTCTATA AGACCTAATG ACTCTCAAAT CAGTCCAGGA TTCTTTCCCT AAACTCTCTT 001760
001761 TTACTGGGCC AATGTGGTAT CTAGTAACTA CTACTACTAT TTGCAAAAGT AGGTAAGCGG CTTCCACTAA CTATGAAACA 001840
001841 GTTATCTATT TCCATAAATG ATAGCTTGGC ACCAAATACA TTTAAAATGT GATGTGATTT TTTTTTTTTT CTTTTTCTTT 001920
001921 TCTTTTTTTT TTTTTTTTCA CTGTAAAAGA TCAATATTCT TTCTAGTCAA ATTCCAGAAA TAAAAAGAAG CCAAAGAATG 002000
002001 AGTTCAGTGA GATCCTGGAT TTTCCCTTTC TCTACTTTTT CTGCAGAAAG TACGTTTTTG CTCTACTAGT TGTTATTAGA 002080
002081 AAGAATATCT ATTATTCCAT AGAATGTGAA AACCTTCTGT TTCATTAAAA GACCACAGTT TATATTTTGT GAGAAGAACC 002160
002161 TTATCAAACT CCACAAGCAC AGTTTCTTCA AATTTTTCTC TGTGGCATAA TATCTACCTT CACTTGCCAA GATTTTAACT 002240
002241 CTAATTTGTT TTCATCTGTC TCCTCAAGGT AGTTTATAAT TTATTTATAA GGTATTTATA GTTTATTTTG TTTCTGTGTT 002320
002321 ATGTATGCTA GCATTTTGTC TAGGAGCTCT TCATTCTTCT AAATAAACTG AAGCCAAACC AGACGTTCCT CAAGAGGTTT 002400
002401 CTTAAAGTTT TGTTGTGTTT TCCTCTACCA TGTAGTAGTA ATATTTTTTG CACACCTTTA GTGTATTTGA AAGCACTCTA 002480
002481 TATTTTTAAG CCTACCTTCT CTCTCAAAAG ACTATATATT CTCCCTAGAA TACACTATTT ATTTTCAAAT ACACCCATCC 002560
002561 ACTATCACCA CCACTGCACC TAATACATTC ATGACATCAA CTAGTGATCC AACAAGTGTT TGTTGAATTA TAAAATGGAA 002640
002641 AAAAAACATT CTTTTGGTGG CCATAATTAC AAGTGAATTA TAATTCTTGT AATTATTATT ATACTTTAAG TTTTAGGGTA 002720
002721 CATGTGCACA ACGTGCAGGT TTGTTACATA TGTATACATG ATCTTAAACA ACTGTCCATT AACAAGCCAA CAACTGTCCA 002800
002801 TTAACAAGCC CCTGAGCATA CTGCTTGGCG GACACATTTA AAATACAGAG AAGAGCCTGC TAAGACCTTG ATTTCAATTA 002880
002881 CTCTGAAGTT TCTTGTGGGG TAACCTTAGA TGTCCATGAG GAAAGGCCAT TGTAGTTAGT ACATTTTTTA TGACTAATAA 002960
002961 GATTGAAGTA CATTATCTAG TTGAGTTTTA GGTTTCAAGA GTTTAAAAAG GGTAAAGATG TTAAACTTTA CTACTAAGCA 003040
003041 AAACCCTGGA GTACTAGAGA TTCCTCTCTG TAGAAACCTG TCTTGTCAAA AGTTTTTGAG TTGCTGTCTA ATATCTATAC 003120
003121 TTACTTTTAT CAGAACGAGA TGGAGTTTCA CAGTTGTTGC CCAGGCTGGA GGGCAATGCT GTGATCTTGG CTCACCGCAA 003200
003201 CCTCCGTCTC CTGGGTTTAA GCAATTCTCC TGCCTCAGCC TCCCGAGTAG CTGGGATTAC GGGCACACGC CACCACCCCG 003280
003281 GCTAATTTTT TTGTATTTTT AGTAAAGACG GGGTTTCTCC ATGTTGGTCA GGCTAGTCTT GAACTCCTGA CCTCAGGTGA 003360
003361 TCCACCTGCC TCGGCCTCCA AAAGTGCTGG GATTACAGGT GTGAGCCACT GCGCCTGGCC TGATCTAGTT TCTTATTGTA 003440
003441 CTAGAATAAT CGTTAATGTT CTTCACAAGT AATACCATTG ATGTTCATCT TTAAAACAGT AATAAGCTGG AAACCCTATA 003520
003521 AGGATATAAG TAACACACTT GTGAATTAGC AAAACTTTTG TATCTTCTCA AATGAAAATC ACTACAAAAT CTTTATCTTG 003600
003601 TCTCAGCTTG AGTTTAGAAC TAACATTCCT AAATTATTCT GTTTAAAGTA AGAACAGATA GGTGCTTGTG AGGTCTCATC 003680
003681 TCCATGACAT CTGACAGTGG CTTTGGGTGT TGCCTAAAGA GAAAGCAGCA AGCAACAGTT ACAGAGGTGA CAAAGAAGCC 003760
003761 ATTTTGCTTT TAGTTAAACA CCAAATGCCT TAAATGAAGT CTTCAAGTTT AATGTTAAAA GATACCAAAT CATAGAATTT 003840
003841 CATTAGGAAG ACTACAAGTT AAATG
[back to top]

Predicted Small Protein

Name NONHSAT075862_smProtein_3017:3301
Length 95
Molecular weight 10518.2232
Aromaticity 0.127659574468
Instability index 64.6691489362
Isoelectric point 8.80218505859
Runs 16
Runs residual 0.0413968547641
Runs probability 0.0410760024731
Amino acid sequence MLNFTTKQNPGVLEIPLCRNLSCQKFLSCCLISILTFIRTRWSFTVVAQAGGQCCDLGSP
QPPSPGFKQFSCLSLPSSWDYGHTPPPRLIFLYF
Secondary structure LLLEELLLLLLEEEEELLLLLLHHHHHHHHHHHHHHEEELLEEEEEEEELLLEEELLLLL
LLLLLLLLEEEEELLLLLLLLLLLLLLLEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooo
oooooooooooooooooooooooooooooooooo