NONHSAT075862
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT075862 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3865 nt |
Genomic location |
chr2-:181970580..182309557 |
Exon number |
12 |
Exons |
181970580..181970695,181988623..181988706,181991894..181992422,181993130..181993574,182028673..182029275,182141401..182141798,182227414..182227645,182243183..182243564,182263065..182263392,182270930..182271382,182286881..182287119,182309501..182309557 |
Genome context |
|
Sequence |
000001 AAACTGCTAC ACAACGGTGT TTTACCGCAA GATTCTCATA CACATGGCTT CATCTTGAGC CATGGGGCTT GGAATCTATT 000080
000081 TAGATCAATA CACAAGGCAG AAAGGACAAG ACCCAGTTGC TGAACTGAAA CAACTGATTC CATTGGTAGT CTCTCTATCA 000160 000161 GCACCAAACC TGGAAATGCC ACTCCTCAAG AAAAAGACCA CCAATCCAAG CACCTTTCTA AAATCACTTA GTGGAGGCCT 000240 000241 GAATCTTGTA AGAAAACTAA CTTAGAGTTT CTGCATTTAC AAATAAAATT TCTTTTCAAT GGATAGGTGA GTAGAAGAGA 000320 000321 GAGTACATGA GATCATTCAA AAGACAGTCA CCTAGACCAG AGACTAAGGT AGGGACCATA TTAAATAATA GATGGGTAAA 000400 000401 TAGGTATATA GATAGACAGA AAGATACATA GGTATAAACA AAACCATCTT AATTCTTCTG AGAGTTGCTG GCAAGTGAAA 000480 000481 AGAATCAGTT TTGGCTCCAG ATGTAAATAT GGGGAAAAAG AGAAATTATG TGTTGAAACT GACAGATTGC TCACTTCAAA 000560 000561 AAGATGAAAT TTGTTATATT GTAACCCAAT GAGAGAGAAG TCAGTCTCTG GAGAGGTCAA TTCTATTTGT TCTCAAGAAA 000640 000641 TTCACTGAGA TTTGAAGGAT TAGTGTAGAA AGGAGTGTTA TTCATGACAG GAAGCTTTTG GTATTCTTCC TAATACCTGA 000720 000721 GGAACAGACC AAATCTTCTT GCTTGTTCCT TTTTCAATCC CAAAGCAGAT GTCGTCTCTC AGCTCTGCCC TGATGTGCAA 000800 000801 TTTTATAGTT TTCCTGGGTC TCTAACTGGT GCTATAATAA ATTCAGAGTA ATTGTTACAC ACCTTTAACA GCTTCAAAAC 000880 000881 ACATTTAAGG TATTTTCTTA TTAATTAACT TTCTCCTCAT ATCAGCAAAA GCAGTTTGCT TTAAAAAGTT CCTTGGTAAC 000960 000961 AGTAGTCTAG TTTCTTGCCG TCACTCAGAA ACTTGAGAAG ATTCTTTTGA TGTTGGTCTC TCAGTTTAGG ATGAAACTAG 001040 001041 TGGAAAGAAG ATAGTGAAAG AGTAAGCGGA ATTGAGTGAT GGCAGCATGA ACTCAGCTGG GCCCCGTGGT CCTCAGCCCA 001120 001121 GCCCTCGGCA GAAGCAGTGA ATTCAGCCAT AACTACAGCA GAGTCTGATC ATTCTCCTGA TGAAATTACA CTGATCTAAT 001200 001201 TTGCACGCTG TGAAGACATT TGGCACTGGC TGGATCTGAG CCTTGACATC TTCATTGGAA CTAAAAGTAC ACTAAGAACT 001280 001281 GACATTACGT TTCACATTCT TTTCTGCCAG GCTGTGGCAT TTCATCCTCT TTAAAGGCAT TATTTCAAGA ACATTTAATT 001360 001361 TGGCTTTGAT ATGCCTGCCA TTTTGCTGGG TGGAACATAC TGCGCCAGAA AAGCTCAGCT GTAATAAAGT TTGGCACCAA 001440 001441 CAGCTCACCA TATACCTGCC TCTGAGTTGG AGTAATTTCC TTAATTTTAA TATCACAAAC ATTTTCTTTC CATCATTCTT 001520 001521 TTCATCATGT GATTCTGGAA CTGAGCTTGG CAAAGCGTGA GTCTAAAGGT ACTTCCAGTT TGCTTGGCTG GTTAGGCTAT 001600 001601 GGTCCTTTGC AGTATCATTC ATGTCACTTA TTTACAGTGG TCCCTCTTAT CTGCAGTTTC ACTTTCCGCA GTTTCAGTTA 001680 001681 CCTGCAGTCA ATGTAAGATA TCTTTCTATA AGACCTAATG ACTCTCAAAT CAGTCCAGGA TTCTTTCCCT AAACTCTCTT 001760 001761 TTACTGGGCC AATGTGGTAT CTAGTAACTA CTACTACTAT TTGCAAAAGT AGGTAAGCGG CTTCCACTAA CTATGAAACA 001840 001841 GTTATCTATT TCCATAAATG ATAGCTTGGC ACCAAATACA TTTAAAATGT GATGTGATTT TTTTTTTTTT CTTTTTCTTT 001920 001921 TCTTTTTTTT TTTTTTTTCA CTGTAAAAGA TCAATATTCT TTCTAGTCAA ATTCCAGAAA TAAAAAGAAG CCAAAGAATG 002000 002001 AGTTCAGTGA GATCCTGGAT TTTCCCTTTC TCTACTTTTT CTGCAGAAAG TACGTTTTTG CTCTACTAGT TGTTATTAGA 002080 002081 AAGAATATCT ATTATTCCAT AGAATGTGAA AACCTTCTGT TTCATTAAAA GACCACAGTT TATATTTTGT GAGAAGAACC 002160 002161 TTATCAAACT CCACAAGCAC AGTTTCTTCA AATTTTTCTC TGTGGCATAA TATCTACCTT CACTTGCCAA GATTTTAACT 002240 002241 CTAATTTGTT TTCATCTGTC TCCTCAAGGT AGTTTATAAT TTATTTATAA GGTATTTATA GTTTATTTTG TTTCTGTGTT 002320 002321 ATGTATGCTA GCATTTTGTC TAGGAGCTCT TCATTCTTCT AAATAAACTG AAGCCAAACC AGACGTTCCT CAAGAGGTTT 002400 002401 CTTAAAGTTT TGTTGTGTTT TCCTCTACCA TGTAGTAGTA ATATTTTTTG CACACCTTTA GTGTATTTGA AAGCACTCTA 002480 002481 TATTTTTAAG CCTACCTTCT CTCTCAAAAG ACTATATATT CTCCCTAGAA TACACTATTT ATTTTCAAAT ACACCCATCC 002560 002561 ACTATCACCA CCACTGCACC TAATACATTC ATGACATCAA CTAGTGATCC AACAAGTGTT TGTTGAATTA TAAAATGGAA 002640 002641 AAAAAACATT CTTTTGGTGG CCATAATTAC AAGTGAATTA TAATTCTTGT AATTATTATT ATACTTTAAG TTTTAGGGTA 002720 002721 CATGTGCACA ACGTGCAGGT TTGTTACATA TGTATACATG ATCTTAAACA ACTGTCCATT AACAAGCCAA CAACTGTCCA 002800 002801 TTAACAAGCC CCTGAGCATA CTGCTTGGCG GACACATTTA AAATACAGAG AAGAGCCTGC TAAGACCTTG ATTTCAATTA 002880 002881 CTCTGAAGTT TCTTGTGGGG TAACCTTAGA TGTCCATGAG GAAAGGCCAT TGTAGTTAGT ACATTTTTTA TGACTAATAA 002960 002961 GATTGAAGTA CATTATCTAG TTGAGTTTTA GGTTTCAAGA GTTTAAAAAG GGTAAAGATG TTAAACTTTA CTACTAAGCA 003040 003041 AAACCCTGGA GTACTAGAGA TTCCTCTCTG TAGAAACCTG TCTTGTCAAA AGTTTTTGAG TTGCTGTCTA ATATCTATAC 003120 003121 TTACTTTTAT CAGAACGAGA TGGAGTTTCA CAGTTGTTGC CCAGGCTGGA GGGCAATGCT GTGATCTTGG CTCACCGCAA 003200 003201 CCTCCGTCTC CTGGGTTTAA GCAATTCTCC TGCCTCAGCC TCCCGAGTAG CTGGGATTAC GGGCACACGC CACCACCCCG 003280 003281 GCTAATTTTT TTGTATTTTT AGTAAAGACG GGGTTTCTCC ATGTTGGTCA GGCTAGTCTT GAACTCCTGA CCTCAGGTGA 003360 003361 TCCACCTGCC TCGGCCTCCA AAAGTGCTGG GATTACAGGT GTGAGCCACT GCGCCTGGCC TGATCTAGTT TCTTATTGTA 003440 003441 CTAGAATAAT CGTTAATGTT CTTCACAAGT AATACCATTG ATGTTCATCT TTAAAACAGT AATAAGCTGG AAACCCTATA 003520 003521 AGGATATAAG TAACACACTT GTGAATTAGC AAAACTTTTG TATCTTCTCA AATGAAAATC ACTACAAAAT CTTTATCTTG 003600 003601 TCTCAGCTTG AGTTTAGAAC TAACATTCCT AAATTATTCT GTTTAAAGTA AGAACAGATA GGTGCTTGTG AGGTCTCATC 003680 003681 TCCATGACAT CTGACAGTGG CTTTGGGTGT TGCCTAAAGA GAAAGCAGCA AGCAACAGTT ACAGAGGTGA CAAAGAAGCC 003760 003761 ATTTTGCTTT TAGTTAAACA CCAAATGCCT TAAATGAAGT CTTCAAGTTT AATGTTAAAA GATACCAAAT CATAGAATTT 003840 003841 CATTAGGAAG ACTACAAGTT AAATG |
Predicted Small Protein
Name | NONHSAT075862_smProtein_3017:3301 |
Length | 95 |
Molecular weight | 10518.2232 |
Aromaticity | 0.127659574468 |
Instability index | 64.6691489362 |
Isoelectric point | 8.80218505859 |
Runs | 16 |
Runs residual | 0.0413968547641 |
Runs probability | 0.0410760024731 |
Amino acid sequence | MLNFTTKQNPGVLEIPLCRNLSCQKFLSCCLISILTFIRTRWSFTVVAQAGGQCCDLGSP QPPSPGFKQFSCLSLPSSWDYGHTPPPRLIFLYF |
Secondary structure | LLLEELLLLLLEEEEELLLLLLHHHHHHHHHHHHHHEEELLEEEEEEEELLLEEELLLLL LLLLLLLLEEEEELLLLLLLLLLLLLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooo oooooooooooooooooooooooooooooooooo |