NONHSAT075984
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT075984 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6287 nt |
Genomic location |
chr2+:186923254..186965726 |
Exon number |
5 |
Exons |
186923254..186923714,186932840..186933840,186946053..186946143,186947780..186951158,186964372..186965726 |
Genome context |
|
Sequence |
000001 AGTAACTTTT GACTTTCTTT TAAAGTTAAA AGCATAAACA GAGATGTGTT GCCTTTAGAA ACTCTTTTGA AAGAGCAAGC 000080
000081 TTTATAGCAA TTGTTTAATC TATTATTGAT ATATAATATA AATGTGACGT ACCTACTACA GCAATTCATT TATTGAGTAT 000160 000161 AAATTAGAAG GTCTTTTCTT ATTCAATTAA ATTACAAGGT ACCACTCAGC AGCTAGCTCT CCAACTTTAC CTCAAGTTGC 000240 000241 AGAGAATATG AGTAGTACTC CAAGTGTTCC TTTGTTAGGC GATGTTTTTG TGTTGCATCA CTCAGAGATC AACACTCGCT 000320 000321 TGAACTGCTG TCATTATGGA GCTTGAATAG GAGAAATTCA CTGGAGCCAT CATTAATGCT TTTTAATGAA ATATTAAATT 000400 000401 GCTGTAGCAC AGAGTATATG GAGTGAGCCA GTTTAACAGC AGTCTAAGCA AAAAAGAAAA CCAAGCCATA GTTAAAACCC 000480 000481 TGGTGTTCCA GAAAAGACTC CTCTCTTACT TTATTCCTCA CCTCAGGGGC ATCATTAACC TTTTTCTGCA CAAACTCTTT 000560 000561 TTCTCCTTTT TCCTTGAGTG AATTTACGTG TTTGGTTTTA TGCCTGGCTT GTTTTCTCTG CTCACCCCTG GATAATTGAT 000640 000641 GTTTGAGACT GTCTTTGCTT CCTGAGGTTA ACTCATCTAC CTCTGGTATC CACTCTGTGC AATGTAGGCA CAAATTCTGT 000720 000721 GGTTCGCCCT TTTACTAATT TGGCCCAAAA GGTGAGTTTA GGCAGCTGTT TTTGtcagtt ttctattgct atcccaaaaa 000800 000801 tgtagcggtg taaacaacta cattttagta atatataact ctgggttagc aatttatttt gtggtcaact gtgtggtttt 000880 000881 ctgctgtctg tgtcagggtc acttatgtaa ctgcaatgat atggtggatc aactgcacat ggatggcctg agataccctc 000960 000961 atgtctggag gctgcagctg gctgtcaggt gggccatgtg tctctggcag actggcctgg actttctcac aaagtggcag 001040 001041 cttttcaaga gattaagctt caatgtgtaa gcatttgtaa agcctgtgct tgtatcacat ttactggtgt cccatttgcc 001120 001121 aaagtaagtc atgtggtcaa gctcagagtc CCATATTAAG GGGTAATATA GCAGAACAAA GACACAGGAA TTCATGTGTG 001200 001201 AATTGGATCT ATTAACCTTT TAAAAGACAG TTGATTAAAA GACAGTTTTT TATAAAGTCA TTCCCTTTTC TGCTTTATTG 001280 001281 TGCTAGTCGG TAAGATGAAG GGTAAAGATG AAAGTGGGTA AATGGGTAAA TCTGAGTAAA TCTTTGATTT TTCACATGCA 001360 001361 TCATATTTCA TTTTATGGGA AGTTTATTTA ACACCAGTCA AGACCACCGC AAATTTGAAC AGATCACTAA GCTAATTAAC 001440 001441 CAGAACATTC AGCTCTTTTA AAGCACCTGA TTTGGAAGCT CAAAATCTGT GTTCAAATTT CAGTTCTTGA AGTTGAATAA 001520 001521 TTGATCTCTT GAGCTTTTAG AGTGTCTGTA TGTcaccatc attaacaaat catcgattcc acatcccctt ctctgactca 001600 001601 ctcttttcta tttttccagc acacttaatc aaacttctca attataacac ttaccattga gaagcttcat gcacttgccc 001680 001681 ctctcccata atcctcagtg tgttttcagc tttcttcttt tcctgcttaa gttccagaga caatcattaa aatcattttg 001760 001761 ttatcaatgt ctttaatttc tatgtccctc tctccatccc ttctcgcatg ttggtcaaga ccctactaat ttcctttgag 001840 001841 cttacatcct gccaattgag ggttgttaga taaaatcaca tagattggca ttatatattc ctaacagtat taattgagta 001920 001921 gtcaacaatg tccatcaatc ttactctatt ttcatatggt gctaaaatat ttatatcaat gactttttaa tgcattttcc 002000 002001 acactaatca aacctctcac tcccttcatc ttttcatcac actttttagc tgatgacctc aattactatt ttgtaaaatc 002080 002081 ttgaagccat cagataagaa ctcaactcat ctcatcacca aactgtaaac ttaacctgaa cagtcaccaa tactctcttt 002160 002161 attcactctt gttataatgg atgtcagagt ttggtttccc ttcttctata atcctagcac tcttattgta tttgggatcc 002240 002241 tatcttactc attttttagt cacatccatt gactatatct tccctttcta cacattgttg tacgtgagta ttcaaacatt 002320 002321 ctctggcatc tcccatatta aagaaaaata aatctctcct tgaatcccaa attactttcc atatgctata atattttctt 002400 002401 tttcatttca agtcaaattt attgggaaga atctttatat atgctacttt atctcctaag cccatgttga atctgaactg 002480 002481 actctccatc tggcttctac ctttgccatt atatcaaaac tgctcctacc aaagacacca aAAATATGTT CTGCCCACCC 002560 002561 CAACCTTTCT TGAATAATTG GATAATTCCT ATTCAAGTCT CATATTTTGT TTCCTCAATG ATACCTTAAT AATTAATTAA 002640 002641 ATTATGCTGT CATAGTACTC TGTATTTATT CTTCTTAGCA TATATCTACA TAGATTATAA TTCAATACTT GTTGTTGCTC 002720 002721 AAAGGCACAT CACTCTATGG TGGTACAATT AAATAAAAAT TCTGACCAAG AAGCATTACT GAGTACTGAG AGTAACACTA 002800 002801 TCAATACATA GCAAAACTTA TCAAAAGAAA TCTGCTTATT GCAACTCCTC CCCTAAAGAT TCATTCAACA GTGTGATGGC 002880 002881 TCTAATCCCT TTTTCACTTT TCTCTGCCTA AAACAATCTG AATTGTACCT CCACCTAATC AACTATCCTC TTCATTTCTT 002960 002961 ACTCAATTAT CTCGCTACCT CTTTACTATA TATAGAAATC TAGTCTTTTT CAGCAGCATT AAAAAAATGT CTTCTAAGAA 003040 003041 GGATAGAGAC CTTGTATCCT TCTATAAATG GGAAAGGGTT ATAAACTCTT CAGTAATGTT TAATTTATAA CCTTACTACT 003120 003121 TACTTAGTCC CTATCTTTCT TAGATCTCTT ACCTATAATT GAGGGAGTGA ATGAGTGAAT AAATATTTGA AAAAGAAATT 003200 003201 GGTAATGACA TCGTGATTCA CTGACAATAT GCCAAGAAAG AAGAATGAAA ACTGTTAGAA TTAAATATTT GTGTTATTTT 003280 003281 AAGGTTTTGA AACTCTGCCC TTTCTTTTAG AGGTCTAAGT CATTAGATCC CAATATCTTT ATTTAATTTT TATATGGTAG 003360 003361 AGATCTAGGA AGAACATAAT TGAGACATGT CATATAATTA CTTCCTGATT TGATGTGCCA TTTTAATTAA TTTGGGGTTA 003440 003441 AGTTCCCATA CTATAGGATA AAATGGTGGG GTTCATGTTA TCTCTTTAAT TTTCCCATTA CTCTGGGGAG GAGAAGGGAG 003520 003521 AGTACTTAAG CTTTTCATAT TAAAGTTTCT AAGCTGATAA AAATTCAAGG TTAGCACAGA TTTTGTGTGG TTCAAGTAAG 003600 003601 ACACACACTA TCTGAGGAAT ATTTAGGCGA TCAAATATAT TTTTAGAACT GTCTCAGAGT TTTTTTTTTC TCTGACAAAA 003680 003681 TAATACAGTT TCTAGGAAAC CACTGAAAGA CTATTTTTTA AGTTAGCTTC ATGATGAGAA TATTTTAAAA ACCATCAGTA 003760 003761 CGTATTTTTT ACTGAAACAT TTCTCTATTC AAAACAAGCA GATGCACTCT GACTCAATAT CAAACTCAAA ATCATTACTG 003840 003841 TTTATATCCA AGATTATCAA GTGGCTAAAC TTATATCTGC CTGCTGTTTG TCAACACTTC CTCCTCAGCT GGCCAAGTGC 003920 003921 ACAGTGACTT TGTTTGACAT CATTTGGCAC ACAAATTCTC CAAGTTTAAT TCTTCAGGCC AGCACAGTTG CAAGTTTCTT 004000 004001 TAGTCCTTCC CCTCCTCTGG ATTATTCCAG AACACCTCCC CTTTTAAAAG GGGAACTGCT GCCCAATTAT CTAGGGCACA 004080 004081 GCTCTCTATG CATAAATCTC TAGTAAGGTA CACATGGATT TTTCTCTCCC CAAAATAACT TCTTGAGAAT TTCATGCCCC 004160 004161 AGGGAATAAT GAAGAAAATG TGATTCAGTT CCATTTCCAC TTAATGACAT ATATTAACTT TGTAATGAAT TCATAAACTT 004240 004241 AAGTAACTAA TTATTCTAAA Ccaggagtta gcaaactttt tccataaaga gccaaatagt aaacattgtt ggcattgtga 004320 004321 gccatatgat ccctttcaca actattcaac tctaccactg tagctcaaga acagccataa acaattcata aaaggatgag 004400 004401 tgtgactgtg taacaataaa ctccatttac aaaacaaatg gtgtgccagg tttgacccat aggccatagt ttcctgaccc 004480 004481 ctCTTCAAAA CTAACTATTA ACATGTAGgg agcatactgg cataaatgaa aaaacacggt tattgaagtc aagccaacat 004560 004561 gtattcatat cccggctcca gcaatttata taatttggga taaatgataa gacctattta aatcttcttt gtcatctgtt 004640 004641 aaaggaaatt gtatctccca tcccacacac gttctatgaa tattagatga gaaaaaatgt ttataaaaag tttTAACAGA 004720 004721 AATTTTTACA ACAATGGACA TAAAAATAAC ATTGCTATTT ATGTGAATAA TAACCATTAT TTCAAATTCT ATGAAACTTA 004800 004801 CCTCAGATTC AGTTTCATGC TTGACTGAGA ATGGCTTGTC CTTATATACA CTAGATACTT TAAAAACTGT GCTAGTAAGT 004880 004881 GAAATGCAAG AAACACATGA TTTTAGTTAA CTATTTGAGC AGTAATTGTC AAATGCACAC CCCAAGCATT GCCTAATATT 004960 004961 TTCAGAGGTC ATGAAAAAAT AACATCAGTG ATAAACAACA ACAACAAAAA ACAGTGTTAG TGACTTTTAC ATAAGAATTA 005040 005041 GTTTCAACCT AAATACCTGC TCCTCTAATT CATCTTGTTG TCTCAATTCT TTCATGCAAG TAGTTTTCAT CTGAGTACCT 005120 005121 GCAGCAAATC CAGAATTTGA AAATAATCAG ATAGAACAGT GTGCAATTTA AGGTCCCAAC GACAAGTACA GAAATGTTGT 005200 005201 TTTATGCTTG AGGGAATTGT GCATAGACCA TCTGCTGCCT TGGTGATTCC CATGATGCCT GTCAAAGCAT GCATGCATGC 005280 005281 ATGAAGAAGC AGAGAATAAA AAGGGAGATA TTCTCAGAGC AATTGGATCT GGCATCTAGG AAACCACAGC ATCCACACTG 005360 005361 GACATCAGTC AAACTAATAA TTAAGCCCAT GTGGTGTATT TTAGATCCAC CTACTGAATC CAGATTCTAA GAGAAGAATG 005440 005441 CCATTGAGAG TTTTTAATAT TCTAACGTCA CTGTGCATTT CATGCAGCTT GAAGTAAGAG AAAAATTGAA TAGACCCTCT 005520 005521 TGCCGTATTT GTACTGCATT ATGAGACACA ATGGAAATAA CATGGAAAAT GTAACTTTTA CTAAAAGAGA AGGCTGTTTT 005600 005601 ACTAAGAGTC TGCAACACGA TGGTCCCTGC TATCTTTGAA CTTACTCCTA AAGCAGCACA AGATTTCTCT TTGCCTATTT 005680 005681 ATCATATAAT AAAAGTACTT ATGCTTAATA ATACCTGCAA ACATTCAGGG TTTGACATGT GAGTAAAAGG CAAAACAAAA 005760 005761 CAGAGTATGT GACAGATTCA TAGAATAGAC ATACAGAATT GGAAATTCTC TACCCCCCAA CAACAAAAAA TAGTaaaaat 005840 005841 taggaattgc caattacatc tgtccccaat ggtatttagt aagagattct ggacttgAAC TACCTATGCA GGCCTTATTG 005920 005921 TAAGTTATTT CTGGAAGTAG GTACAAAGGA AGAAAATAAA GTATTTACAA GTTTATCTAC ATGAGTTATT TGTCCCTAAA 006000 006001 GAATGCCTTT TAAATGTAAG AGTAATACTT TTATTCCAGA GGGCAATAAT TCTATTTTTT AAACAGATTG TACTTCATAT 006080 006081 GTCCAGAAAT TGTATTCTTG GAAGCTACTC ACTAGAACTT ATAACTAGAA ATGATTCCTA TATGGAAAAT GGAAGCATGA 006160 006161 CAGAATGTGA TGGGCTGCTG TTAGAGTTAG TAcaaccctc ataagagcat gccattctta ttagttgcat atttggtaga 006240 006241 tatacattaa tttatcttta aataataacc cagggtattg attctta |
Predicted Small Protein
Name | NONHSAT075984_smProtein_2180:2350 |
Length | 57 |
Molecular weight | 6426.4677 |
Aromaticity | 0.196428571429 |
Instability index | 49.6983928571 |
Isoelectric point | 5.96990966797 |
Runs | 9 |
Runs residual | 0.00741608118657 |
Runs probability | 0.0326110424149 |
Amino acid sequence | MSEFGFPSSIILALLLYLGSYLTHFLVTSIDYIFPFYTLLYVSIQTFSGISHIKEK |
Secondary structure | LLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLEEEEEEEELEEELLEEEEEEL |
PRMN | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiii |