NONHSAT075991
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT075991 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1919 nt |
Genomic location |
chr2-:187228431..187350882 |
Exon number |
3 |
Exons |
187228431..187229856,187321442..187321578,187350527..187350882 |
Genome context |
|
Sequence |
000001 CTGCGTCCCA CTAGGAGGGG GCAGGGACGG GACGTGGGAA AATGACTACG CGTCACTCGT GATGTCGCGC ATCCGATAGG 000080
000081 CCCTTTTCAG ATGGCAAAAG GCCTGAGGGT GAATCTGGGC GAGCTGGTTG AGTCCATGCG TTTGTGCTTC CTCTCAGTCC 000160 000161 ACTTTCGCTT ACGATGGGGC GACTCTTGTC CATCGTCACC TCACCGGGAA ACTTTTCCTG CCGGGCCAGT TAATGGTCCC 000240 000241 CTGTACCATC CCCATCCTGA GTGACTACTA AGCAGCCGCA GCGACTCGGG GTTGCTCCGT GACCACGTTA CTCAGTTAAC 000320 000321 CTTCTTGTTC CCTGGAGAGG CGGAGCTGAA TGGCCCggac ggggtttctc catgtttccc aggctggtct caaactcctg 000400 000401 gactcaagca atctgcccac cttgcctccc aaaatgctcc tccaaaaaag gagtgtgccg ccacacccag ccTGAGCAAC 000480 000481 TTTTGTTTTT AAGGTTGGCT TCAGAGGTGC AAGTATATTG GCAGATGCCT ACTCAAGATA GGCCAAGGAA CCCTGAGGGA 000560 000561 TGTCGGCTAG CTTTCTGTGC TGCACATTGA TGTCCTCCAG CACCTGCCAT GAATGCCGCA ACTATGTCAA GTTCTTCTGG 000640 000641 ACCAGCATGT CTTTCCACTA TAATTCATTC CTTAGTTCGA AGAAATCCTC TTTGATAGCA TTATCTGGTT TCTGGACAGA 000720 000721 TAATTGCAAT CTTTTTGAAG AAAAAAACAT CCTATCTGTC TTGCAATATC CAGAAACTCC TGGATACACT GATCAACACC 000800 000801 AGTTTGAATT TCTTCCTGAT TGGTGCCATT GACATACTTC TGACTCACCA GAGAAGCAAA GCAAGCCTGA AAATATGACT 000880 000881 TCAACTTTTC CATCAAGGTA CTGTCATAAG GTCTTAGAGA ACCTGGAGCT TCCTGAAGAA GCAAAGCCTA GCTTGGGAGT 000960 000961 TCCAGTGGGG GTGGTGGGGG ACCCAGTGGC TCCACAGGGA ACATAACACC TGGTGGAGCT GCCATATCTT GAAtgagatt 001040 001041 tcttttaaag agtcagtgga gatgttaact aggcagttga atatgaatct gacattcaag agagtagtcc agaacaaata 001120 001121 catatttgag agttattgac caagagaagg tattaaagcc aggatttcac agagataagg aaaacacaga ggtgagatga 001200 001201 tttatgttca aatctggagt actatcaaca gttggaggtt aagcctagga ggaagagaca ggaaagaagt ctgttgaaga 001280 001281 aggtagaagg aaagcaggaa aaagttgagt catagaagcc aagaaaagaa agcatttaaa gaaggaggaa ataatcaatt 001360 001361 attttaaatg cagtttaaat ttcaaatatg gtagggacag agaagtgatt tctgatattt catagcatgg aaattatagc 001440 001441 aaccttaaca agaagagtct tggagatgtt ataaatatga aagtggtggg gacaagtgca agttaagaag aaaataaaag 001520 001521 gaATTTAAAG AGATAAATAG AGCTTAATCA AAACAAAAAT GGAATATACA ACAACCCAAC AACAAGAGCA ATGAAACAAA 001600 001601 AACATAATTT AGCAAATAAA ACATCAAAAC AACAAAGCCC CCAAACTATC TTTAGATTCC CTTTGAGCTA TGTTTAAAAA 001680 001681 ATTTTTTTGC CACTTATCTT CCTCAAACAG TAACCTGTAT TCCACTCACT CAGCTTTACG CCTGTGCTGC TCTAGATTCC 001760 001761 ACTTCCACTG CTCCTGTAAA CTCTCTCCAC TGTCACTGAT GACTGCACAA TGAGACTTTA TTCTCTGCAC TTCTCTGAAG 001840 001841 TCCTTGAAAT Acagtaatcc ctccttactt ataagggata tgttccaaga cattcattat atgcctgaaa ccacaaaaa |
Predicted Small Protein
Name | NONHSAT075991_smProtein_371:589 |
Length | 73 |
Molecular weight | 8258.5953 |
Aromaticity | 0.0833333333333 |
Instability index | 40.5222222222 |
Isoelectric point | 9.14813232422 |
Runs | 9 |
Runs residual | 0.0159164639092 |
Runs probability | 0.0347602504466 |
Amino acid sequence | MFPRLVSNSWTQAICPPCLPKCSSKKGVCRHTQPEQLLFLRLASEVQVYWQMPTQDRPRN PEGCRLAFCAAH |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLHHHHHHHHHHHHLEEEEELLLLLLLLL LLLLEEEEEELL |
PRMN | - |
PiMo | - |