NONHSAT075998
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT075998 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3337 nt |
Genomic location |
chr2+:187378238..187406872 |
Exon number |
6 |
Exons |
187378238..187379347,187380736..187381418,187381523..187382076,187385415..187385989,187388621..187388926,187406763..187406872 |
Genome context |
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Sequence |
000001 CATTCCTGAA TTTTTACACG GTGCTGAATA GGTACTGAAA GTAAAAATTT TAGTAACTAA ATCTGCCAGG TGCAATCACA 000080
000081 TGTGCTTGTA GTTCCAGGTA TTCTGGATTC AAAGGCGGGA GGATCACTTG GTCCCAGGAG TTTGAGCCTG CAGTGCACTG 000160 000161 TGATTGCATC TGTGACCAGC CACTGCACTC CAACCTGGGC ACATAGTTGA GACCTTATCT CTTTAAAAAA AAGCAGGGAA 000240 000241 GGGGATGATT AAATCTTCTT TGATAAATTG ATTTTGAGAA TATTTCATTG AAAAACTAGA TAATTTGTGG AGATACATTG 000320 000321 TCAGTTGTAT ACAGACTAAT TAACTACATT GGTGATTCAC TCCATGGACC ATTTTCTTCA GATATGTTTG GAATTATTAT 000400 000401 CTATTCCTAC ACTTATTGCA CTAATGACTC ACCTTAGAAG GAAAAGAAAA ATTTTAATTT ACTTAAAAAA AATTTTTTTT 000480 000481 GATTGAATAG ATAATTGTGT ATATTTGTGG TTAATTATTA TTTTACACTC CAGACCTATT TCTACACCTG TAGGGAAGAA 000560 000561 ACTTAATCAC TGATATCGTC AGCCTGTCAG ATACCACTGA TATCTTCAGT CTAGTTTTAA GAAAAACTAG GACTAAGAAG 000640 000641 AAGTATATAA TCAAGTTCAA GCTAATCATG GCCATTTTTA AATTACTTGG TCTTTTTTAA TACTTTTTCC CAGAGCAACC 000720 000721 TTCTAAATGG AAGGGCAAAG CCTCAACTAT CTAAAATGCA GCTTTTAAGG ACTCTTAGAT GTATGATATG CCTTATGTAC 000800 000801 AGGAGATTCC ATCTATACCT TGACACCCAC ACCACTCCCA CCCCTGTTCT CTCTTCCAAG AAGGTTTTTG GCAGCAAATA 000880 000881 GTTCTCTTTA ATTATTATAT TTAAATATTT GTATATATTT AATTCACATT AGGGATAACA ACTAAGAATT ATTTAATTGG 000960 000961 CAGGTTTATT AGGTAGTTGT TGATTGATGA CATGTATAAC AATCCAAATG GTATGATAGG TGAAGCCAAT GCAGTGGCAC 001040 001041 ATGCCTGTAA TCCCAGCACT TTGGGATTGC TTGAGCCCAA GAGTTCGAGG TTGCAGTGAG CCATGATTGC AGTTAAATGT 001120 001121 TCCAAAAATG ATTTTCAGAG CATTACTGGA CATTTTAATT AAAAAGAATT AGTATGAGGA GGTAGAGACA ATGGCAACTA 001200 001201 TCTACTGCTA CTCCCTGCCC CCAGCAAAAA AAGTGCCATT CAGGGAGTAA GAAACAGCAA AAGTAGAATT TAAGTTTTCC 001280 001281 TGAATGGATT TAACCTGTTA GCATTTAAAA ATAGTATTTT GTGGTCAGTC ATCTTAAGCT TGTCTCTATT TTATCTATAT 001360 001361 TTACATAGTT TTTATTAGAA ATAACACCCA TTAAAATTTA ACAGAAACTT TGTATGCTGC CTAGAACGCT AACTAGTTTA 001440 001441 TTGGAAGTCA AATAAAAATA TAATTTTTTT AAGGTTTCAA TAAGATTCTT AAATGTATAA TGTAATGTAT TACTGCTCAT 001520 001521 TCTTAAACAG AATTGCCTAC TGCTAACAGT TTTGAAAAGA TTGTCCATCT TTTTCATCTC TTCCCTTTGA TAGTTGAAGA 001600 001601 TCAGAAGACC AAACATAAAA TTCACTGCCA GAACTTGTCC AGAGGCAAAC AGTAAAAGCA TAGGAAAAAT ATTAAAGTGA 001680 001681 GCCAATAGGA TTTCAGAGGC CTAGATAACA AACTTAAGGG CGGCTAACAG GTTTATACTT GCACCTACAT TTTTATATCT 001760 001761 GGCTTAATTG CTAAGTAAAT GAGCATCAAC ATTGAAATAT ATTTTTCTTT TTCAAAATGG GAGCTTATAT AGTGACTTAT 001840 001841 TAACATCTAA AAGTGTAAAA CCAAATTTCA AAGAGGTAAA TTGAGAGATA TGTTTGATTA ATTCCTCTGG TGAAACAAAA 001920 001921 TAGCTTTTCA TAGATCTTTA CTAAACTTTT TAAACAGCTT TAAGGTATAT TTGACACAAT AAACTATACA TATTCAAAGT 002000 002001 GTACAATTTG GTGTTTGACA AATATATTTA TTGTGAAATC GTAACAAGAT ATAATCTACA TATTCATCCC TCCCAAAAGA 002080 002081 TGCTCCTTTG TAATCCTTTC CTCCCCAAAC ACCAACCACC CACCAACTCC AGACAAGCAC TGGTCACCAT AGATTAGTTT 002160 002161 ATAGTTTTTT AATGATTTTA TATAAATGGA ATCATATAAT ATGTACTTTT CATTTTACTT CTACTCAGCA TAATTATTTG 002240 002241 GAGATGTATC TATGTTATTG CAGATATCAG TACATTCCTG TAAATTGCTT AGTAGTAGTA TTTTGTATGG ATCTGACACT 002320 002321 GTCCATTCAC TTGTTGATGG ACTTGTGCAA GATTTTAGCT AGAGTCAACT ATCAACTCTC CACAGCTTAT CACTGAAATA 002400 002401 ACAAGCTTCG TGTGACCATA TTAAAAATTA TCAGTTTTAC ATTTGAAAGG CCCAGTGCCA ACCTGGAAAA AATTGCTTGC 002480 002481 ATTGATGAGT AATAAATTCT ACATTTTGCA TATTCTCACA ACTGCATGAA TTCATTTCAC AATGTTGGCA AATAATCTGA 002560 002561 ATTCTTGGTG GCACGGGTCC TCCGTATGCT GAGCGCCGGT CCCCTGGGCC CACTTTTCTT TCTCTATACT TTGTGTCTCT 002640 002641 TTCTTTTCTC AGTCTCTCGT CCCACCCGAC TGGAAACACC CACAGGTGTG GAGGGGCAGG CCACCCCTTC ATCTGGTGCC 002720 002721 CAACGTGGGT GCTTTTCTCT AGGTTGAAGG TATGCTCGAG CATGATCATT GAGGACAAGT CGACGAGATT CCCGAGTACG 002800 002801 TCTACAGTCA GCCTTGTGAC ATTTGAAGTT CTACAATGAA CCCGTCGGAG ATGCAAAGAA AAGCACCTCC ACGGAGACAG 002880 002881 AGACACCGCA GTCGAGCACC ATCGGCTCAC AAGATGAACA GTTGATTATT CTCTATCCCT TGGCAATCTC ATTCACTTTC 002960 002961 ATGATTTAAA TAATTGCTTC CATATGAACA ACTGTATCTT CAGCCTCACA TGTCCAGTAA GCTACTTACT GCACAGCTCA 003040 003041 ACGTGAATAT CCTGCCAGTT CTTCACATTC CATACTAAAG TTGTTGTTTT CTTTCCTAAA TCTTTTCCTC CTTTTTCTTT 003120 003121 CTTTTTTTCC CCCTGTTATT AAGATTTTAT TATCCAGCCA AGTGGACTAA AAAATATCTA TTGGTTATTT TGCCAAACCA 003200 003201 AGATTTCTCC TACATTCATC CTCTTTTTTA GGGTTGAGTT AATATGTATA AAGTGCTTAA AACAATGCCT GGCTGAAGTG 003280 003281 TTTGTTTTCC GTTAGGAGAG AGGGAGAGAC AGGAAGAAAG TAGCAAAGAA TCTGAGA |
Predicted Small Protein
Name | NONHSAT075998_smProtein_2171:2395 |
Length | 75 |
Molecular weight | 8974.6295 |
Aromaticity | 0.162162162162 |
Instability index | 41.7108108108 |
Isoelectric point | 7.64007568359 |
Runs | 11 |
Runs residual | 0.00599868160844 |
Runs probability | 0.0306322365146 |
Amino acid sequence | MILYKWNHIICTFHFTSTQHNYLEMYLCYCRYQYIPVNCLVVVFCMDLTLSIHLLMDLCK ILARVNYQLSTAYH |
Secondary structure | LEEEELLEEEEEEEELLLHHHHHHHHHHHHHEEEEELLEEEEEEEEHHHHHHHHHHHHHH HHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLL LLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiiii iiiiiiiiiiiiii |