NONHSAT075998

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT075998

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3337 nt

Genomic location

chr2+:187378238..187406872

Exon number

6

Exons

187378238..187379347,187380736..187381418,187381523..187382076,187385415..187385989,187388621..187388926,187406763..187406872

Genome context

Sequence
000001 CATTCCTGAA TTTTTACACG GTGCTGAATA GGTACTGAAA GTAAAAATTT TAGTAACTAA ATCTGCCAGG TGCAATCACA 000080
000081 TGTGCTTGTA GTTCCAGGTA TTCTGGATTC AAAGGCGGGA GGATCACTTG GTCCCAGGAG TTTGAGCCTG CAGTGCACTG 000160
000161 TGATTGCATC TGTGACCAGC CACTGCACTC CAACCTGGGC ACATAGTTGA GACCTTATCT CTTTAAAAAA AAGCAGGGAA 000240
000241 GGGGATGATT AAATCTTCTT TGATAAATTG ATTTTGAGAA TATTTCATTG AAAAACTAGA TAATTTGTGG AGATACATTG 000320
000321 TCAGTTGTAT ACAGACTAAT TAACTACATT GGTGATTCAC TCCATGGACC ATTTTCTTCA GATATGTTTG GAATTATTAT 000400
000401 CTATTCCTAC ACTTATTGCA CTAATGACTC ACCTTAGAAG GAAAAGAAAA ATTTTAATTT ACTTAAAAAA AATTTTTTTT 000480
000481 GATTGAATAG ATAATTGTGT ATATTTGTGG TTAATTATTA TTTTACACTC CAGACCTATT TCTACACCTG TAGGGAAGAA 000560
000561 ACTTAATCAC TGATATCGTC AGCCTGTCAG ATACCACTGA TATCTTCAGT CTAGTTTTAA GAAAAACTAG GACTAAGAAG 000640
000641 AAGTATATAA TCAAGTTCAA GCTAATCATG GCCATTTTTA AATTACTTGG TCTTTTTTAA TACTTTTTCC CAGAGCAACC 000720
000721 TTCTAAATGG AAGGGCAAAG CCTCAACTAT CTAAAATGCA GCTTTTAAGG ACTCTTAGAT GTATGATATG CCTTATGTAC 000800
000801 AGGAGATTCC ATCTATACCT TGACACCCAC ACCACTCCCA CCCCTGTTCT CTCTTCCAAG AAGGTTTTTG GCAGCAAATA 000880
000881 GTTCTCTTTA ATTATTATAT TTAAATATTT GTATATATTT AATTCACATT AGGGATAACA ACTAAGAATT ATTTAATTGG 000960
000961 CAGGTTTATT AGGTAGTTGT TGATTGATGA CATGTATAAC AATCCAAATG GTATGATAGG TGAAGCCAAT GCAGTGGCAC 001040
001041 ATGCCTGTAA TCCCAGCACT TTGGGATTGC TTGAGCCCAA GAGTTCGAGG TTGCAGTGAG CCATGATTGC AGTTAAATGT 001120
001121 TCCAAAAATG ATTTTCAGAG CATTACTGGA CATTTTAATT AAAAAGAATT AGTATGAGGA GGTAGAGACA ATGGCAACTA 001200
001201 TCTACTGCTA CTCCCTGCCC CCAGCAAAAA AAGTGCCATT CAGGGAGTAA GAAACAGCAA AAGTAGAATT TAAGTTTTCC 001280
001281 TGAATGGATT TAACCTGTTA GCATTTAAAA ATAGTATTTT GTGGTCAGTC ATCTTAAGCT TGTCTCTATT TTATCTATAT 001360
001361 TTACATAGTT TTTATTAGAA ATAACACCCA TTAAAATTTA ACAGAAACTT TGTATGCTGC CTAGAACGCT AACTAGTTTA 001440
001441 TTGGAAGTCA AATAAAAATA TAATTTTTTT AAGGTTTCAA TAAGATTCTT AAATGTATAA TGTAATGTAT TACTGCTCAT 001520
001521 TCTTAAACAG AATTGCCTAC TGCTAACAGT TTTGAAAAGA TTGTCCATCT TTTTCATCTC TTCCCTTTGA TAGTTGAAGA 001600
001601 TCAGAAGACC AAACATAAAA TTCACTGCCA GAACTTGTCC AGAGGCAAAC AGTAAAAGCA TAGGAAAAAT ATTAAAGTGA 001680
001681 GCCAATAGGA TTTCAGAGGC CTAGATAACA AACTTAAGGG CGGCTAACAG GTTTATACTT GCACCTACAT TTTTATATCT 001760
001761 GGCTTAATTG CTAAGTAAAT GAGCATCAAC ATTGAAATAT ATTTTTCTTT TTCAAAATGG GAGCTTATAT AGTGACTTAT 001840
001841 TAACATCTAA AAGTGTAAAA CCAAATTTCA AAGAGGTAAA TTGAGAGATA TGTTTGATTA ATTCCTCTGG TGAAACAAAA 001920
001921 TAGCTTTTCA TAGATCTTTA CTAAACTTTT TAAACAGCTT TAAGGTATAT TTGACACAAT AAACTATACA TATTCAAAGT 002000
002001 GTACAATTTG GTGTTTGACA AATATATTTA TTGTGAAATC GTAACAAGAT ATAATCTACA TATTCATCCC TCCCAAAAGA 002080
002081 TGCTCCTTTG TAATCCTTTC CTCCCCAAAC ACCAACCACC CACCAACTCC AGACAAGCAC TGGTCACCAT AGATTAGTTT 002160
002161 ATAGTTTTTT AATGATTTTA TATAAATGGA ATCATATAAT ATGTACTTTT CATTTTACTT CTACTCAGCA TAATTATTTG 002240
002241 GAGATGTATC TATGTTATTG CAGATATCAG TACATTCCTG TAAATTGCTT AGTAGTAGTA TTTTGTATGG ATCTGACACT 002320
002321 GTCCATTCAC TTGTTGATGG ACTTGTGCAA GATTTTAGCT AGAGTCAACT ATCAACTCTC CACAGCTTAT CACTGAAATA 002400
002401 ACAAGCTTCG TGTGACCATA TTAAAAATTA TCAGTTTTAC ATTTGAAAGG CCCAGTGCCA ACCTGGAAAA AATTGCTTGC 002480
002481 ATTGATGAGT AATAAATTCT ACATTTTGCA TATTCTCACA ACTGCATGAA TTCATTTCAC AATGTTGGCA AATAATCTGA 002560
002561 ATTCTTGGTG GCACGGGTCC TCCGTATGCT GAGCGCCGGT CCCCTGGGCC CACTTTTCTT TCTCTATACT TTGTGTCTCT 002640
002641 TTCTTTTCTC AGTCTCTCGT CCCACCCGAC TGGAAACACC CACAGGTGTG GAGGGGCAGG CCACCCCTTC ATCTGGTGCC 002720
002721 CAACGTGGGT GCTTTTCTCT AGGTTGAAGG TATGCTCGAG CATGATCATT GAGGACAAGT CGACGAGATT CCCGAGTACG 002800
002801 TCTACAGTCA GCCTTGTGAC ATTTGAAGTT CTACAATGAA CCCGTCGGAG ATGCAAAGAA AAGCACCTCC ACGGAGACAG 002880
002881 AGACACCGCA GTCGAGCACC ATCGGCTCAC AAGATGAACA GTTGATTATT CTCTATCCCT TGGCAATCTC ATTCACTTTC 002960
002961 ATGATTTAAA TAATTGCTTC CATATGAACA ACTGTATCTT CAGCCTCACA TGTCCAGTAA GCTACTTACT GCACAGCTCA 003040
003041 ACGTGAATAT CCTGCCAGTT CTTCACATTC CATACTAAAG TTGTTGTTTT CTTTCCTAAA TCTTTTCCTC CTTTTTCTTT 003120
003121 CTTTTTTTCC CCCTGTTATT AAGATTTTAT TATCCAGCCA AGTGGACTAA AAAATATCTA TTGGTTATTT TGCCAAACCA 003200
003201 AGATTTCTCC TACATTCATC CTCTTTTTTA GGGTTGAGTT AATATGTATA AAGTGCTTAA AACAATGCCT GGCTGAAGTG 003280
003281 TTTGTTTTCC GTTAGGAGAG AGGGAGAGAC AGGAAGAAAG TAGCAAAGAA TCTGAGA
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Predicted Small Protein

Name NONHSAT075998_smProtein_2171:2395
Length 75
Molecular weight 8974.6295
Aromaticity 0.162162162162
Instability index 41.7108108108
Isoelectric point 7.64007568359
Runs 11
Runs residual 0.00599868160844
Runs probability 0.0306322365146
Amino acid sequence MILYKWNHIICTFHFTSTQHNYLEMYLCYCRYQYIPVNCLVVVFCMDLTLSIHLLMDLCK
ILARVNYQLSTAYH
Secondary structure LEEEELLEEEEEEEELLLHHHHHHHHHHHHHEEEEELLEEEEEEEEHHHHHHHHHHHHHH
HHHHHHHHHHHLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLL
LLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiiii
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