NONHSAT076298
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT076298 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2557 nt |
Genomic location |
chr2-:200796056..200820223 |
Exon number |
7 |
Exons |
200796056..200798046,200800654..200800770,200801128..200801215,200803656..200803793,200804812..200804856,200808488..200808557,200820116..200820223 |
Genome context |
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Sequence |
000001 AGACCTGGAA GAGGGCAGGC GTGAGCAACC ATGGCCGGGC AGCACCTCCC GGTACCCCGG CTGGAGGGCG TTTCTCGGGA 000080
000081 GCAGTTCATG CAGCACCTCT ACCCACAGAA CTTTACCTTT TGACCAGTTG GTCCAGAGGG CAGCTGAAGA GAAACATAAA 000160 000161 GAATTCTTTG TTTCAGAGGA TGAGAAATAC TACTTACGGT CACTTGGAGA AGACCCTAGA AAGGATGTTG CAGATATCAG 000240 000241 AAAGCAGTTT CCTTTGTTGA AAGGAGATAT TAAGTTTCCA GAATTCTTCA AAGAGGAACA GTTCTTTTCC AGTGTTTTTC 000320 000321 GAATTAGTTC ACCAGGATTA CAACTATGGA CTCATTATGA TGTAATGGAT AATTTGTTAA TACAAGTGAC AGGAAAAAAG 000400 000401 CGTGTTGTAC TCTTCAGTCC TCGAGATGCC CAGTATTTAT ATTTAAAAGG TACTAAATCA GAAGTACTGA ATATAGATAA 000480 000481 CCCAGACTTG GCTAAATATC CACTTTTTTC CAAGGCTAGA AGATATGAAT GTTCCCTTGA AGCTGGTGAT GTATTATTCA 000560 000561 TTCCTGCTTT ATGGTTCCAT AATGTAATTT CTGAAGAGTT TGGAGTGGGA GTGAATATCT TTTGGAAGCA CCTTCCATCT 000640 000641 GAATGCTATG ATAAAACAGA TACCTATGGA AACAAAGATC CTACAGCAGC ATCAAGAGCT GCACAAATTC TGGACAGAGC 000720 000721 CTTGAAAACA CTGGCCGAGT TACCAGAGGA ATATAGGGAC TTCTATGCAC GACGAATGGT CCTACACATT CAAGACAAAG 000800 000801 CCTACAGCAA GAACTCTGAG TAAATAATGA AGTGAATGCA ATGCACATTA ACACTTTAGT AAGGTATAAC GATATAAATT 000880 000881 AAAGATTTTG TTAAAATAGG AAAGATACAT CAGATTTACA GATTATGTAA GTACGAAGGG GTGTTTGTGT GGATTCTACT 000960 000961 TGATACAGAT TGTTATAATT AAAGAATGCT GTGCTGGGAC CACTCTTTAA CATTCAGATG CTGACCACTA aaagtccaac 001040 001041 ttaaaatgac ttaaaaacag taagaaaata tattgattca caatacatga aatctattga cagaatgtgc tgcagtgttt 001120 001121 ctgatccaat gattcagtaa tgtcatcaag aaccttggga acccgcctcc acaccccacc cccttttcaa ccacaacatt 001200 001201 ggcatcatcc taaggctggc taccctcgtg gtcatgggat gattgccagt agcagttgga gccttgtgca tcttcattta 001280 001281 catgcagcgg aagagtcagg ctggattcta ggggccctgt cctagtatga gaaagctttc ccagaattca ctttccatat 001360 001361 ccttaggtct cattgctcta aagtaactta gacctgtcca tccctgagcc agtcactggc aaagggtcta gaataacctt 001440 001441 tagggcagtc aggtccactg gagctgagAG TAGAAGTGGA GGCCACATGA GGGATATATG GGGACAGAAA GGATAGTTTT 001520 001521 TTTAAAATCA TGGTTCTGAT AGGAAAAACA TGAGCAACGC ACAATATCTA TTACATTTGC CTAGAAGCAg aattttttga 001600 001601 ggaactttaa aaaatgtaca gatacctagg tcccaacttt gtagactgat tcaagagtgt ttgggatttg gtataggaac 001680 001681 ttaatagacc tcacagggtg ttctgatgca taatcagagc tgagatcaac tgGAGTTGAT GATAGTGACT TGGATTATTA 001760 001761 GTTTTGTGAT TAGTGCAAAA CAAATGTTTA ATCTGATCTT GACTTTTCTT GCCACCCAGT ATGTCAGGGT GGTTTTTGGT 001840 001841 TTTTGAATGT TACAAAATAA ATAATTTATA CCTATGTCTA AACCTTAGCC TAGTTAAAGA TTTCCCAACT ATTTTTTCCA 001920 001921 CCTATCCCTT TTTTAAAAGA AAAATTACTT AAAGAATGAA TAAATGAGAT CCTAAAAGTG TTGTCATCGA AGACAGTGAG 002000 002001 CCATTGTGTG TGGATCTCTG CTTTTGTTTT GTACCTAGTA ATTATATTGC AGTGTCATTG AAGACCACAT AATCTTCACT 002080 002081 GAACATAAAT GTGTTCATCT AAAGCAATCT CTTAGTACAT CAATTTGGTG CATTTTAATT AGAGAAAATC ATTTTCTCTA 002160 002161 TTGAAGAGAA TCCATCCACT CATGTCCTAT AAATTATAGT AAATAAGGAA AAGCATATAT AACATTCTGA ATTTCCTAGG 002240 002241 TGTCTTTGGA AACAGGTAAG TTACTCAGGT GAATAAAGGT GAAAAAAGTC TTGTCAGAAA AGGAATGATT ATATTAGCCA 002320 002321 AATTTAATTA CCAGGTTTTG ATCTTCATTA AGCAAAGCAA AGAACTTCTT TACTGATTCC TTGTCCTTCA GTAAGGAAAA 002400 002401 AGACAAAACT CTCCTTAGTT TACACATTAT TTATGGTCAG TTTTTAATAA ATCTTGTTTT TTTTCTTAAC CAGCAAGAGA 002480 002481 ATTGATACAA AGTATAAATC CAGAGTCATG TAGAAAACTT GGAAGTATTA ATAAAACAGA TTACAGTTTG TGCACTG |
Predicted Small Protein
Name | NONHSAT076298_smProtein_1139:1324 |
Length | 62 |
Molecular weight | 6755.5822 |
Aromaticity | 0.0819672131148 |
Instability index | 54.3590163934 |
Isoelectric point | 9.97711181641 |
Runs | 7 |
Runs residual | 0.0380629357452 |
Runs probability | 0.0155449567214 |
Amino acid sequence | MSSRTLGTRLHTPPPFQPQHWHHPKAGYPRGHGMIASSSWSLVHLHLHAAEESGWILGAL S |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLHHHHHHHHHHHHHLLHHHHLL L |
PRMN | - |
PiMo | - |