NONHSAT076364
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT076364 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3673 nt |
Genomic location |
chr2-:201977126..201980798 |
Exon number |
1 |
Exons |
201977126..201980798 |
Genome context |
|
Sequence |
000001 ttctttcctt cttttttgag acagagtctc gctctgtggc ccaggctgga gtgcagtggc gcaatttcag ctcactgcaa 000080
000081 cctccgcctt cctagttcaa gcgattctct tgcctcagcc tcccgagtag ctgggactac aggcacgcgc cagcacgccc 000160 000161 gcctaatttt tgtgtttagt agagacgggg tttcactgtt ggccagaatg gtctcgaact cttgacctcg tgatccgccc 000240 000241 gcctcggcct cccaaagtgc tgggattaca ggcgtgagcc accacgcccg gcGCGAGTGT TTACAATTGT TGTCTGGGAG 000320 000321 TCATAGCAAA CGTGAACACA CTTTGTGGTT TTTTGTGTGT ATGTttttgt ttgttttttt ttgttttcct tcttgagaca 000400 000401 gggtctcgcg ctgtcgccca ggctagaagg cagtggcgcc atcacagctc actgcagcct ggatttcccg ctctcaaacc 000480 000481 atccagccct cagcctccca agtagcgggg accacaggtg caagccacca tgcccgacta attttttttt ttttttgtat 000560 000561 ttttagtaga gatggggttt caccatgttg gcaaggctgg tctccaactg ctggcctcaa gtgatccttg cccgcctcgg 000640 000641 cctcccaaag tgctgggatc acaggcgtga gccaccgcgc ccCTCTACGT TTTTATTTAT TCCTAATAAC TACTTTATTG 000720 000721 TGATTCTTAA AGAGCtttaa cttttcttga gataatttta aactcacagg aaaggtgaag aataatacca agagagACTA 000800 000801 ACAGCAGgac ggcatgaaga gctcgggatt cacccctagt gaaactgaaa attatttaaa acaacaaaca accattaacc 000880 000881 atttaaagcc tttgaaatgg tcctaagggc aaacagcaaa tgaagaaaca tctgttccaa aaaatctatg aaaactcttg 000960 000961 gatcagaatg tgagagtcag tctgtggtat ttaaaccaaa cctctccctt tgttcagcaa gagactccac tccagactgc 001040 001041 tgcaactcag aacctctctc ttcccacagc tcccagtcag agaccagcat atcagcattt ctcatcttgc ccctagctac 001120 001121 ctgatgctga aggtaaatcc tgggggagtg tggtggagag gtgggagatt ccttcttcca tccagAGGCT CTACCTTGGG 001200 001201 TGGAGTGCTG AGACACCaga ggagacttca gctctttttc tccatcactt tcaccccata ttcaccccca accttttttt 001280 001281 ttaatctctc catcttccca agatagttat attctgtttg attaatcttc agtatatatg ctattataat catgtaaacg 001360 001361 gtagtcacag ccaagttatg taccaaacta tgattacttt tcctttccca cacaactttt agttttttct ggagttaata 001440 001441 attgtcttgt tttgttggtt tttccatgta attctatcct aaactctgtc agttatccaa gtttGGtttt ttgtttgttt 001520 001521 ttgagacagg gtctcactcc aggctggagt gcagtgaccc gatcacagct cactgcagcc ttaacctccc aggttcaagt 001600 001601 gatccttctg cctcagcctc ctgagtagct aggactacag gtcctagcat gccaccatgc taggtgtgcc actacaggtg 001680 001681 ccaccatgcc cagctaattc tttaaaaaaa aatttgtggc ccggcgcaat ggcttatgcc tgtaatccca gcactttggg 001760 001761 aggctgaggc gggtggatca cgaggtcagg agttcaagac cagcctggcc cagatagtga aaccccatct ctactaaaaa 001840 001841 tacaaaaaat taactgggtg tgatggcggg cgcctgtaat cccagctact caggaggcta aggcagagaa ttgcttgaac 001920 001921 ccgggaggcg gaggttgcag tgagcctaga ttatgccagt gcactctagc ctgggagaca gagtaagact ccatctcaaa 002000 002001 aaaaaaaaaa aaaaaaaaaa aaaaaaaaat atatatatat atatatatat atatatatat atctagtaga agcgggggtc 002080 002081 gtgggtggca gggagtcttg ctatgttgcc caggctggtt ttgaacttgc ctcaagtgat cttcctgcct aggtcttcca 002160 002161 aagcactggg attacaggca tgaccactgc TGCTCTTGGC CTTTCTTATC TTTTTAGTAC ACCAAGAAAA TTTTATTACA 002240 002241 GATCAGCACC TGTCCTTAAT TTGGAAACTA CTATTCAAGA ACACCTAGCT TAGCACCTCC ATCACCACCT CCAACCCACC 002320 002321 CTATCCCAAG TGAAAGCCAT TTCTGGTTGT CAGTAGAACC ATCATAGTGG ACTTACCCCA GGcccacctt gcatgcccac 002400 002401 tgattcttac cacttcaaca cacaccagta tgacttctaa cccagcatat ccatatgtcg ttccctgagg gctttttctg 002480 002481 gctcacattg gaagcccatg ttgtcatccc atttggcaaa ccagtagggg caggcattta acccccTACC CCTGTGCCAT 002560 002561 CCTTATCCTT TGGCTTCAGC AGCCCTCAAA GAATGACTgt atacacctat gttgacactc ccacctgcag tccactttcc 002640 002641 atttacatcc tcttaaaatc agccacccct tgggcttagg gatgtgcata cttgcagcat agtttgtccc tggggtatgg 002720 002721 acttggggaa gaggccaatg taggccctgg tgggaggctc agggctcttt gcgtagagaa cttcaggtct taggtaccca 002800 002801 aagagggttt attctttttg tttttttgag acgtagtctc actctgtcac ccaggctgga gtgtagtggc acaatcctgg 002880 002881 ctcactgcaa cctctgcctc ccaggcccaa gcaattccct tgcctcggcc tctcaaatag ctgggattat atgcgcgcac 002960 002961 caccatatcc ggctgatttt tgtattttta gtggagacag ggtttcacta cgttggccag gctggtcttg aactcctggc 003040 003041 ctcaagtgat ctgcccacct tggcctccca aagtgctgga attacaggcg agagccacca cacccagccc caaagagggt 003120 003121 tttaaacaga gggtctcggt gtgggcatgt cctcttgacc ttgcagactc ctcccacctc tgatgattct cctcacctga 003200 003201 gggaagggca cagcccaaga agagccggag caaggccctt ctaaatcagg gcccacaaca ggacccccag tgcctgggtc 003280 003281 caagggcagt attgCTTAAG CCTCTCTGAC TTTCTGTTTC CACACTTAAC AAAGTAGCAA CAAATGTTCA CGTTTTCATC 003360 003361 AAATTcactg gttgtaaacc ttggctgcac attagactgt ccccaaggag ctgcaaaaac ctcagtggcc aggtaccatt 003440 003441 ccagactaat tgtatcaaaa tctctgagag tgagacccag ggattggtag tttttaaagc tccccgtgtg atttcaatgt 003520 003521 acagttaaga ttcagaacaa ctgATCTAAT CCAAACATTT TCTCACTCCG Tcaaccacaa cccaattttc agatgaagaa 003600 003601 tctgaggctt aaagtgagtt aataaattga gacatctcac aactagctag tgacaggact aggacaggat gcc |
Predicted Small Protein
Name | NONHSAT076364_smProtein_947:1123 |
Length | 59 |
Molecular weight | 6135.8185 |
Aromaticity | 0.0344827586207 |
Instability index | 67.2120689655 |
Isoelectric point | 4.64166259766 |
Runs | 8 |
Runs residual | 0.0186623721106 |
Runs probability | 0.0384759759761 |
Amino acid sequence | MKTLGSECESQSVVFKPNLSLCSARDSTPDCCNSEPLSSHSSQSETSISAFLILPLAT |
Secondary structure | LLLLLLLLLLLEEEELLLLLEELLLLLLLLLLLLLLLLLLLLLLLLHHHHEEEELLLL |
PRMN | - |
PiMo | - |