NONHSAT076591
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT076591 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3373 nt |
Genomic location |
chr2-:208084575..208125307 |
Exon number |
10 |
Exons |
208084575..208084677,208095248..208095339,208096156..208096637,208100023..208100334,208102910..208103461,208104585..208105062,208110117..208110611,208111575..208111980,208124847..208124997,208125004..208125307 |
Genome context |
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Sequence |
000001 GATAGTTAGG ACTTACCTGA GCAGGAATAA GTTTTCAATG GTACAGGCAG ATGCTTTGGG AATCAGGAAG TGACCTGCTC 000080
000081 CTCCTTGAAA TGACTCTGGG CTGGGGCAAT GGTGACACTG CCACCTCATG GGATCTGGGG TTACCTGGTG GAGGAAAGAC 000160 000161 GCAGGATGAA GAGAACCAGG TATAACCCTG CCACTTGGAG TTTTTCCTAC AACTTGGGCT GGTGAAATGC TGAATCTCAG 000240 000241 TTTATGTTCA AAATAAATGA AACCTCATTC TATTACCAAA ATAAACTGCT CACATGTGAT GTTGAGACAG CCAGACAGAA 000320 000321 GCTGCCTTCA TACCAAAACA AGTGAATCAG GTGGTAGGAA TAAATGAACA AAGGGCAAGG CATTGTCACT GCCCCTTTCC 000400 000401 TTCAGCAGTA GAAAGACTGA CTAGAAAATT CATACGTAAA GAAAAAGACC TTTTTACTAT AAGTCAGACA TGGTTCAAGG 000480 000481 CTTTGTTACT AGGGTTTCTT TTGATCCTCA AGAAATTCCT TAAGGTAGGT ATTGCCCCCA TTTTAAACAA GGAAATTGAG 000560 000561 GCTCTGAGAG ATTAATAAGG AGACTGATCC AATAGCTCAT AAGCTGTTGA ACTGAAGTTG TACCTGATCT CCGTATACTT 000640 000641 TCTCCTATGA CACAAGCTGG GGGTGACAAG CACATAAGAT GATACATTCA ATGCTTTAGA AGTAAGAGTG TAAGCAAGTT 000720 000721 ACTGGAAGTA CTGAAAACAA TGTTATTTAG TTCTGGATCA ACTAGGGGAG ATACCCTTTT AGACTTAATC TTCCTGTAAC 000800 000801 AGGAAAAATT AATTAAAGAT TGAAGATTTC CACAGTAGAT GGCATGTTCA GAGCGGGTGA TGACAATGGA AAAGATCCTT 000880 000881 TATGTACCCA GCAGGAACAC CAGGGGAAGC TCTACCTCTT GATTAGATGT AAAGATGGCA GGACAGATTA ACACCCAAAG 000960 000961 ACACATTTCA ATGGGAAGCT GTGTTCACTT TGGGATCCTA GAGCAGGTTT CCCAGGCCAC AGACTGCAGT GGAGATTTGC 001040 001041 TTACAGGTGA CTGGGGGCAG GGAGTTCTCT GGGGAACAAT ACCTGTTGGG GAGTGAAGGC AGCAGGACTA GGCAGAGGGG 001120 001121 AAAGTAAACT GCGATGCAGC TGCAGCAGAG GCCTCAGCAC CCCACCAGGA GCTGCAGAGC TGGGGTGGTT TTCCAAGAGA 001200 001201 TCCTGAATTC AGGCAAGATG GGTACAACCT TTGTACCACA CTATGGACTA ATCACTTGGA ATGTATGCTG CCCCCAGGGT 001280 001281 GGGGGCACAT CCTAGAGCAA GGTGGCTCTT TTCAGCAATG CCTGGAGAGG GACTCAGCTG TGAGCCGTCA ACAGCTAGCT 001360 001361 CAAGTGATTC AGAATGAAAA GACCTTGGCA CAGACCTGTT AAGGAAGCTC CATATAAGGT GAAGAAAACA ACATGCTCAG 001440 001441 CCATGTCCTT GCCTTCTGCA CACGGTAGTG CATTCACTGC CTGAGAATTC AAGGCTAAAA CAAAAAGAGG AGCTTTTGTT 001520 001521 CCAACAGATA AGTACTTACC TTTTTCAAAA AATGCATAAG CTGTCCTGGG TGTTTAGCAG TTATTCGCAC AGCTTTCCAA 001600 001601 AGACTCACAG CATTTAAAAG CTAACTCTAC AGAGATTCAA CAGCTTCTTC CAGATCCCAC CACAGTGGAA AAGAACTCCG 001680 001681 GTGTCCTGGC TCCCTGTCCA GCTCTTCTCT CTCCCCTTCC AGCTGCCAGT TCAGCTTTAA GAAGTTCATT CTCCACATTC 001760 001761 AGATGCAGGC AAATGCGTTT GACTTGAGCA TATTGATTTC AGGCAGGTGA GAGTGGATGT AGCGATTCAG CTTGCCAACT 001840 001841 TTCCCCTCCA TCCCCTGCAC CCTTTCACCA AAAGATATGC CTAAGAGTTC CCAAGAGACG TCTAACATAG GCCTGCATGT 001920 001921 CAGCCCAGTC TTCTGGGCTG AGCTGCTGCA CTGTTGCTGG CCTTGATGGC TGAACCTGAT CTCTGTTGTG GCACCCACCA 002000 002001 CTCTTTCTCA AGCCTTGACA CCTTGGCAGG CTTTGGCAAA AAGAGGAGAG CTGTTCTTCC TCGGCATTAT GTTCACTTAG 002080 002081 CAGGGTCCCA CAGCAGGATT GCTTGGACCC CAGAGTATTG TAGGGCTTAA TAAGACCAGC CCTTTCATCT CACACGCTCT 002160 002161 ATCCTTTCTC TCACTGGTGC ACCCACGTCA GGTGTCTTGA GTGGGGAGTG CTCGAATATC TGCCACCAGC TTGAGTCAGA 002240 002241 ACCTCGACTT CCCTCAGCTT TTCAGGGTCT GTTACTGAGT CTGGTCCACA CTCCAGGGTC TTTTCCTCAC GGTCTGGGTC 002320 002321 TGGTCTTTTT CAGGTGCCTA CCTTTCCTCC CTGCAAACTG CCTTGAGTTG CCTCCCCTTC TCCCTTGATA CAGAGAGAAG 002400 002401 ACAGCTGTCT GCAAACCAGA AAGAGAGTCC TCACTGCACT TCATATCTGC CAATGGATCC TTGCTCTTGA ACCTCCCAAC 002480 002481 CTGCAGAATC ATGAGAAACA AACATTGTGT AAGCCACCCA CTCTACAGTA ATTTGTTCTA GCAGACCGAG CTGACTGAGG 002560 002561 TATGGTCTCA TCACGTAACC ACTTTTAACC TTAGTCTTTC TATCTGTAAA GTAAGTGGGT TAGAGAAATC ATTCTAGAAG 002640 002641 ATGTTTCTGC TTTAAAACAA ATTCTTCTAT TTCCTTTCCA ATGTGAAGTT TGGGTGGTTT TGACCTTTTC TCCTTCTTTG 002720 002721 TGATGGTTGT TTTGAGTTTA CAAGGAATCA AATATTTTGT GGGCATCCTG GGGTTTGACT GTTCAGGGGG GAGCCAGAGA 002800 002801 CAGTACAAAG CCAGTTTCCC ACTTTTCAGG CTCACTGAGT GATTTGCAGA ATGGAGGGGG CTTCTGACAC ATGGAGTGTG 002880 002881 AATTGTGTGC ATAAGCAACT CAAAACCCAG GCAACCTTCA GCTCAGGGTT TCCTGTGAAT CAGCTGGGTT TTCTGGCATA 002960 002961 GCAGTGAGCA AGTGGCATTA ATGAGGTAGG CATAAGATGA TGCCAAAGGG GCTCGTCCAT TCAGTAGGAG TTGGGCATAG 003040 003041 CAGTGGTGGA GAAACAATAA ACGAGGGGGC TGTTTTATCC CCTCCCCCTC CTTTTTTTTC TTTTTCTTTT TTTTTAACAG 003120 003121 TAGCAACGTT TTGGCTGATT AAAGTACTTT TCGTGGTTCC GGGAGGGAAG TGCCTTTTGT CACAAGGGAA GATCCAAAGT 003200 003201 GTGGCAGAGA GTGACCAGGT CCCAGACAGG CAAAATCAGC AGATGTCCAT TCGCAAGCCA AAAGAGCTCC AGCATCCTGC 003280 003281 TGGTCCTTAG AGCAGGCTGT GCCTGGGAGC CATCTTTGAA TTCCTCTGAG CTCAGAGGGA GAGAATACCT CTAGTGAGGA 003360 003361 TCCTGGAAAC CTC |
Predicted Small Protein
Name | NONHSAT076591_smProtein_2996:3289 |
Length | 98 |
Molecular weight | 10444.9987 |
Aromaticity | 0.0824742268041 |
Instability index | 49.1432989691 |
Isoelectric point | 8.98004150391 |
Runs | 19 |
Runs residual | 0.0643375334097 |
Runs probability | 0.0538820554301 |
Amino acid sequence | MMPKGLVHSVGVGHSSGGETINEGAVLSPPPPFFSFSFFLTVATFWLIKVLFVVPGGKCL LSQGKIQSVAESDQVPDRQNQQMSIRKPKELQHPAGP |
Secondary structure | LLLLLEEEEEELEELLLLLEELLLEEELLLLLLEEEEEEEEHHHHHHEEEEEEELLLEEE ELLLLEEEEEELLLLLLLLLLEEEEELLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |