NONHSAT076650
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT076650 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4956 nt |
Genomic location |
chr2+:209688900..209723402 |
Exon number |
4 |
Exons |
209688900..209689074,209690123..209690431,209709858..209709950,209719024..209723402 |
Genome context |
|
Sequence |
000001 tttttgtttc taaacccagg acattgagat ctgctggttg gagatcttag tgcccaagga agaatgcttg caaaaggaga 000080
000081 tggaacagtg tttctgttgc attggccact gagaatatct ggttattttg aatttgtcac agtctgcagc taaaaggcga 000160 000161 acaggaaaag aagagagagc ggtaatttga atgatagcag atttcacatc aggaaccaat gaagctagat aagaatgcaa 000240 000241 catctttgat gtctaaaaga aacaaaaagc caaccttgaa ttctttattt agtgaagtta cccttcagaa atgacggcaa 000320 000321 aataaagatg ttttccaata aaagacaact atgagaattc ttcaccagca gtcctattgt atcagaacag ccaaaagaag 000400 000401 tttgtcagcc tacagggaat tatatcaaag ggaagacttg accttgaaaa tgaatgagga atataagaaa ttgatattat 000480 000481 ctggGAATTC ACTGAATGTC TATCTATCAT GTATGCTGTT GGAGGCACCT GTCTTTCAGT TCAGAGGTTA TGGATGTATC 000560 000561 TATCATCAGT ATTTCGGgaa gtcagggacc cggaacagag ggacttaatg aagctgtggc agaagaaaaa attatgaaga 000640 000641 tttcatggac atttattagt tccccaaatt aatactttta taatttctta cacctgtctt tactgcactc tctgaacata 000720 000721 aattgtgaag atttcatgga catttatcac ttccccaatc aacactctta taatttccta tgcctgtctg tactttaata 000800 000801 tcttaatccc atcatctttg taagctgaac atgtatgtcc ctcaggaccc tgtgatgatt gtgctatctg cacaaattgt 000880 000881 ttgtaaagca tgtgtgtttg aacagtatga aatctgggca tctagaaaag gaacaggata acaacgactt tcagggaaca 000960 000961 agggagataa ccattaggtc tgactgcctg gaagccaggc aggaccaagt catatttctc ttattgtcaa aaacgggtaa 001040 001041 gagaaatatt gctgaattct ttccccagta aggaatatta ataactaaca accctgggaa aagaatgcat tcccgggggg 001120 001121 cggcctctaa aatggccgct ctgggaatgt ctgctttatg cagttgtaga tagggatgaa acatgccctg gtctcctgca 001200 001201 gcgcccccag gcttgctagg attaggatat ccagcctggt gaattttagt cagactggtt gtttgctctc aaaccctatc 001280 001281 ttctgaaaag atgttatcaa tgacaatgtg tgcccggtgg gacatgagac ttcctcagca attctaattt tgccctgatc 001360 001361 ctgtgatctc actctgcccc catctgcctt gtgatatttt attgcccttg aagcatgtga tctctgtgac ccacacccta 001440 001441 ttagtacacc cctctccttt tgaaatccat aataaaaact tgctggtttt gtggctcaag gggcatcacg gaacctgccg 001520 001521 acatgtgatg tctcccctag acacctagct gtaaaattta tctcttttgt actctttccc tttatttctc agaccagctg 001600 001601 acacttaggg aaaatagaaa agaacctatg ttgaaatatt gggggctggt tcccccagta catttcgacc ttggagaatc 001680 001681 tgatgatttt gtgcctgatg gttttctttt gtagtatctt gctggggttc tccgcaagat ttgaacattc tctgatttga 001760 001761 atgttggcct ctaggttggg agaattttcg tggatgatat ccttaaatat gttttacaag ttgcttactt tctctccctc 001840 001841 tctttcaagg attcaaatga gacatagatt tgttctcttt acataatccc gtatttcttg gaggttttgt tcattctttt 001920 001921 ttattctttt ttatttttat ctgactgtgt tagtttggag aacccgtctt caagtgctga gattctttcc tcagcttggt 002000 002001 ctattctgtt gttaatacta gcaattgcat tatgaaattc ttgttgtgtg tttttcagct ctatcaggtc agtttggttc 002080 002081 tttcttatac caaccatttt atcttttagt tcctgtatca ttttattgta atctttagat tccttggatt gggtttcaac 002160 002161 tttctgctga atcttgatga tcttcattct tatccacatt ctgaaatata tttttgtcat ttcagccatt tcagcctggt 002240 002241 taagaagcct ttctggggaa ttagtgtagt catttggggg aaagaaaaca ctgtggcttt ttgaattgca gagtttctgt 002320 002321 gtgggttctt tcttatcgtg tgggctgatg gtcctttaac tgcagtgtac agtgaggtga cttcttttct tgatgttttc 002400 002401 agaaggctga gactttgtgc aaagtcttta gttgttgctg agttcttctt cttggtttca caagggggta tattagcaaa 002480 002481 atattttgat gttgaagttt gggctgtgat ctagtagatg gttcttaagc ataatgaact gtacatagtc tcttgctcag 002560 002561 ccatgtgact cctctgtatt tcctcacaat tgcagcctgc tttctctcag ggcctggaaa gtgtgggctc ctctcccact 002640 002641 cgagtgctgg ctgcagatct tgtcttggca atcccgaact gtacaccact gtcctggggt gaactcagct ttttaggctt 002720 002721 tattttcctt ccccagcttg taagcaagag gagaagctac cttggcagca gctgaggcag agggcctttc acttgtttct 002800 002801 tggatctcca ctccagagaa atgcagaacc actaccaatg ggtgcaatta gcctgggatg gggaggctga gttgtgggcc 002880 002881 tgatcctggg gatccacggt accaaggaaa tggggcaggc tcttggagga ggcagactgg cttcttcttc tccttagggc 002960 002961 aactgcaact acaacttttg ggtaaagcac ttagagtctt tgttccttcc ccagtccgag ggcagcaagg gcagtaccac 003040 003041 tgcagcagca gtagcagagg ggcttttagt tgcttctggg tgcccctccc ctagggaaac acggagccac tagcagtgga 003120 003121 acggtcagct gtgggtgagg tagctgttct gtagtcccaa gctgaggctc ctacctgctg aagactgggt agggactcac 003200 003201 aggggataga gactgaattc ctctccatat ggtggctgca gcatgctaga tatcctggca tagcaaccag gccctttgtg 003280 003281 ctttccccag ctcaaggggt agtaaggatg gtaccacagc agttgcaatg gtagagagct gtgggttgtc tctgggattt 003360 003361 cctccataga gaaaggcaga gccaccacca actgcagtgt tcaggcatgg ttagggtgtt tgtgctggga gcccaggttg 003440 003441 agaggcactg cccagtgaag attagtggag ataggacctg tgtgtaaaac agtctggctg cttttctgta agactgctgt 003520 003521 gctgtgctgg gggccaatgt tacttcctaa ttattattgc atttcctcct gaacctgagg gcaataggag tgagggctgc 003600 003601 agagcagcaa aaatggtggc ctacctttcc ctctgagagc tctgtcccag gaaagttcag agctgctaac cagctcaaga 003680 003681 gcccaggccc agtatggctg gcgtcccggg ttaggaggcc ctgccctgtg aggaatagtg ggttcaggga cccacgtgga 003760 003761 aaactggctg cttttctgtc aggtggagtt acatcgctgg gggtccttgt tagtctccaa tcactgtgta ccctcccaag 003840 003841 cctaagggca acagggccga gggttgtaga gcagcaaaaa tgtcagcctg ccccttcctc tgggacctcc atctcaggga 003920 003921 agtggagagc tgctcccagc ccaagaactc aaacagggtt ggggtgacct cattagcatc ccaggccagt gagctgtatc 004000 004001 ctgccctacg agttgcagtg gaggtgaggc ctgcagtccc tcattgctca gccttgtaga ttcaggccct ttcctgggag 004080 004081 tctgcaaagg agcctggcct cccccattgc cagaactgca gctactggtg ttggggtgct ggagaatcca aggctcctgc 004160 004161 gactctgctt gtgcctgtgt ggcttggtct gctcagactc cccacagcac ttcatgtggg tgtggaggct cctgtgttgg 004240 004241 gaaatcacag ggaatgtcct gagcccaggg atgcaaaggc tgtagcagaa gtatgagtcc ctgcagacta tcactcagtc 004320 004321 actcatcatt tccccacagt ataggggtct cctctatctc catgccagtt ccaggtaggc agtcgtccta tcttgctctt 004400 004401 ctctgttctc tgtgggtaac attgtttcct tgatgaatcc caatgtgtcc acctggatgt tctagttgaa gagctagtgt 004480 004481 tacttgttac ttttccttct ttccacgaga gcagcacaca ctagctgctt ctagtcagcc atcttggCCC CAGAACCTGG 004560 004561 TTTTCTCATA TTTTTGACTT GTGATTTATG ATGCAAAAGA GGTGTCAGTT TGTGGACACA TCAGAAATTA CATTAATTGT 004640 004641 TTCTGATATT TCATCTCCAA ATAAAAATCA AACCTGTACT ATCTTTCCAC ACTTGTTATT AATTGAAATA TTTAAACCTC 004720 004721 TCAACTGCTA AATAGATCTC TAAATTATGT GACTACTGCA AGACCGTGTA AGTGGCTTGG CACTGTTAGA TGGGGTGCTT 004800 004801 TATTACAACC TAATGAATTA AGTGTACTAA ATTTTTAATC ATTAATTTCT AGTATCAAAA TGGTGAGTAT AAGGTGTGAA 004880 004881 GTTTTATTTA ATGACTTAAT TTTGAGTCTT AGTTCCAGGA AAGACTTCTA AATTAGAATT CACCCTAGGA TAATTA |
Predicted Small Protein
Name | NONHSAT076650_smProtein_350:607 |
Length | 86 |
Molecular weight | 10052.5179 |
Aromaticity | 0.129411764706 |
Instability index | 40.3705882353 |
Isoelectric point | 9.58233642578 |
Runs | 13 |
Runs residual | 0.0163992869875 |
Runs probability | 0.025117878059 |
Amino acid sequence | MRILHQQSYCIRTAKRSLSAYRELYQREDLTLKMNEEYKKLILSGNSLNVYLSCMLLEAP VFQFRGYGCIYHQYFGKSGTRNRGT |
Secondary structure | LEEEELLLLHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHLLLLHHHHHHHHHHLLL LEEEELLEEEEEEEELLLLLLLLLL |
PRMN | - |
PiMo | - |