NONHSAT077043
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT077043 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5069 nt |
Genomic location |
chr2-:220358356..220363424 |
Exon number |
1 |
Exons |
220358356..220363424 |
Genome context |
|
Sequence |
000001 TGGAACTTAA GACTGGGACC CGAGCTGTTG GGGAATCGGC CTCGGGGCAG CAGCCGAAGT GAGGAACTGG GTCCCACAGG 000080
000081 AAAACGGGAC TAAGGACAGC AGGGGTGTGT GGCCAGCCCT GGAAGGGGCG GGGCCAGGGG CAAACAGCCA CAAGGGGCTG 000160 000161 GGGCTGGAGG CGCTCAAAAG CGGAGAAGGC GGAGTCCCAG GCCCAGCCGG CGGTACCGCT GGGAAGTGAG GGCGCCTTGG 000240 000241 ACGGCGAGGG CAACTCTTAT CAGTTTGACT GTCTGAAATG CAGCACGGCG CTAGGCGCTC TCCAGACCTC CCTGTGACTC 000320 000321 CAACAGGCTG TGACCTTGGC GTGGGGGTCT GGAATACGTG TGGGCGCTGG TGCGGGGGAG AGGGAATGGC GACGCGGAAG 000400 000401 AGCAGGACAG ACGCGGAGGG TCAGAGAGCA GCTTTATTAA GCAAGCTGGT GGAGGGCTGT GGGTCCCACC ACCCCCGGGC 000480 000481 TCGGCGCCAG GGCGGAAGGT CCGGGGGTGC CGTTCAGGCC ACGTCGACGC GAGCGAAGCT CTGGTCCATG CCCAGGCTGT 000560 000561 TCTCCACGTA CACCTCGTAC TTGCCGCTGT CCTGAGGCGT GGCCCGGCGA ATGGTCAGCG TCGTGGTGGT GCTGCCGATC 000640 000641 TCGAAGAACA CCCTGCGGAA GGGCGGCGGG GAGGAGGGCG GAGCCGTGGT CAGTACACGG GCGCACTGGG CGGGGCTCCT 000720 000721 TAGCCAGCTC TGTTCCTCGC TGCCCAGTCC CCGCCCCCGT CACTCCAGCC AGATTTCTGG GCTCAGTCCC ACCCAGGTTC 000800 000801 CAGCCCCAGG CCCTGGCCGT GCCGCAGGTC CCGGCCCTCG CCTGTCATCC TCCTCGATGT CCTCCCCGTC CTTGGTCCAG 000880 000881 CCTACGTCGG GCGCAGGCTC TCCCAGGATC TCCGCAGTCA GCGTCACGGT GGTGCCTTTG CGCGCCTTAG TGTTGTCGGG 000960 000961 TCCCTTTTGA ATCTTCGTCG GGACTAGCGG AAGGAAAGGG GAGCGAAACC CCGTGAAGGA CCCGGAGATG AGGCAGGGCA 001040 001041 TCACCTCACC GGCTAATACC CGGCACTAAA TACAGATGca tttaaactcg cagtgtgacg ttgagcaaat cattagcctc 001120 001121 tctggtttca tctccttggc tgttaaaggg acttatccct gcctctccta cttctcgggg tcgaatagag gatcaagaga 001200 001201 gataaggcgg gcgaaagccc ctGAATGTTC ACACATCTCG CGGTGCCTCa gagaccgctc cgggtagtgg aaattgccag 001280 001281 agttgggagc cagaagaccc gggtccaacc ctggctctgc ctctggcttg ctgtgtgacc ttgggGACCC GGAGCCGCGT 001360 001361 GATGGAAGTC CACAGCTGAC TGCTCAGCCC GGGTGGAGCT GGATCCCGAG GTAGGGAAGG ACGCACTTGG CTGGCGCGGC 001440 001441 GATGCGCCCC AGGCCGTGCC CAGAGCTGGG CTGGCGGGGA CCCTGTAGCT AGGCCCAGAG GTAAACACGC GCAGCTGGAC 001520 001521 CGGGCTGCGG GCTCTGGCTG AGTGGTGCTG GTCTGCGCCC TGGCGCTGCG CCCGGGGCGC GCGTACCTTC CACGAGGATG 001600 001601 CGCGCCGAGT CGGAGCACTG GCCGAAGGGG TTGGTGACGT TGATGCTGTA CTGGCCCAGG TCTGCCAGCT CGCCGTCGCG 001680 001681 CACCACCAGT GCCACCACGT CAGGGTCCTC GAAGACGTAG CGGTACTTGG GACCGTCACG TAGCTCCTTG CCGTCCTTAC 001760 001761 TCCAGCGGAT GAATGGGTCC GGGAAAGCCG AAATGCGGCA AGTGAGCTTG GCCGCGCTGC CTTCGATCAG CACCACGTCC 001840 001841 TTCAGCGGCT CCAGCACCCG CGGCGGCCCC TTCTCGCGCA GCTCCTTCCG GGACCTACCC GCGGGCCGAG TCAGGGCCCA 001920 001921 GAGTTCCTAA GACAGGCCCG GCCACAGCCC TTACCGCGAG CGCACCATCT CCTACCTGCC CCCTGGACCG GCCAGACCCC 002000 002001 TAAACGTGTG GCTTGGTAGG GAAGAGGACT GCTCCTGAAC TGCTGCCCTG ATAGGATGAT GCATTCCTCC CGGCCACTCC 002080 002081 CCCATACCTC AGTAACGACC CTCCCCTGAG ACCACTCATT CTAAAGGCTC CTGACGCTGC TCAGCGCTTA CTCAAACCCT 002160 002161 ACTCAAGAGT GCGCTCTCTG CAGCTCCCTT CCTCCACAGG GCTCCGGGGT TCCCTCTCAC CTGTGGCCCC GGTAAGAGGC 002240 002241 CTGGATACGA ATGGCCGCAC TCTGGACCTG TGGGTCATTG ATGTCCAGGG TACATCCAGG AGCTGGGGCC ACAGCCACTG 002320 002321 GCTTTTTGGC AGGAGCTGCT TTAGACATCT GGGGAGTGGG CGACAAATAT GGGGGTCCAG GTTGAGACAG AGGCTCCCAC 002400 002401 CTTCAGCCCT TTTCCTCCCT GGTCAGAACA TTCAGGGAGA TGGAGGAATG GGGGTGTCTG CGGCTTCTCT GAGGATCAGA 002480 002481 CTCACCGTGG AGGGGTTGAC CTAGGGACTT GAGTCGACTG GCTGGATTGC AGGCAGCACA GAGCCCTTCT GGATGGCACA 002560 002561 GTAGGGGTGC AGGCAGGTGC TCAGCCCTGG GCCCGGTTTT ATACATCGCT CCCCTCCTTG CCTTGTTTGG CGTGGTTGCC 002640 002641 CCAAGCCCCC CGGGGCCCCA TCCGCCTCCC TCTGACTCAG GCAGGCTCTT TATTTAGCCT GTGGATGCCT GGGATGCTGG 002720 002721 CTCAGCCGCT GGGCTAGGCC CGTGGGGAGA AACCCGAGCA GCTCTGAGGT GCACCTTGCG TCAGCACCTG GACAGCTGGA 002800 002801 CAGCTGGATG CTGCCCTGTC CCCTCCCAGG GCAGGGGGTA TCCATCCCAC TCCCAGGAGG ACCAGATTCA GCCCCTAGCT 002880 002881 GACAAGAGAT CCAGCTTCCT GCTGGGGCAG CTTTTCAATC AGGTTGGGCT CTGGATAGTC AGACAACACA CCCTGTTGGT 002960 002961 TAAGGGGTTT GAGTGTTTCT GGGGTTTCCC TGAATACAGC CAGAGTAGCA TCGGACTTGG TCCTCAGGGC CCCTACAGCT 003040 003041 AACGGCAACA GGGCCACGTG GCTGTCAAGA CCAATCCAGA AGCTCCTTAC TCTTCCCCTA CCCCCAACCC CAGGAGTCCA 003120 003121 GGGTTGTCAC TTCCACACTG TGCCCCCTGG CGGTAAACTG AGATAAACCG GGAGGGGACG GGAAAGATTT TTGAGAATAG 003200 003201 CAGCCCCTCC ATGCCTTCCC CATCCCCACT CACTCCCCTC GATGTCACAT GGTGGGGGCT GTTTAGACTG CACTGTCCTT 003280 003281 GGAGATTAGC ACCACTACTG GCCCCAACCC TAGGTCTGCC CAATTCCTTT TTGGGGGCAT AAATTGGTGC ATAGGGGCAT 003360 003361 CAGACCACCT GGGGTGAAGG GGTTCAGTTA ACCCCTCTGG GGATTGCCTG GAGGCCAGTC TGCCCAGGCC GGGCACCGGG 003440 003441 CAGAAGCATT GCTTCCATTC ATTGGAACTA CCCGCCCTAG TGTGGGGGCA CTGTCACGTT TTGATCAGAG CAATTTTGAC 003520 003521 ATAGCTCTGC TGACATAAAT TACCTTTGCT CCTCCGGGTT TGGAACAAGC AGTTCACATG CCATTTCCAA TGGAGATGGG 003600 003601 AAGGGAGCTC AAGATCAGAG CGGGGACGGG AGAGGAATTT TACCATTTAT CAAGATATGA GTTCAGGCAC CTCATTTTTA 003680 003681 TACAAAACAC TTGCAGTGTG TAGGGGATTG GAGATTCTTA CAGGCAAACT GTATAtcttc atcgctaaaa tgacaggtag 003760 003761 gcaaggtgtc gttctggtcc cttccagctg gctttaacat cctgttattt tatgatGATG GGGCTTGCCT CTTCCCTGGG 003840 003841 GTCCTGAGAA GCTAGAGAGG CTGGGCTGGG CTGGGCAAAA GGGTTGTCTG GGCTGGAGCC AAGGGGCCCT CAACCTCCAT 003920 003921 CAGCAACACA GCAGTGACAA CTCTGTCTAC CCTGGTCAGA GGCTTTGTTC CTTTTACTTT GCCAAGAACA GAATTTTGAA 004000 004001 GGTGGGGATG AGGGAAACAT TTCCTCTGGA GACAAGGAGG TCTGGGTCCC TGCCAACCCC CCAATCCCTC GTCCCCAACC 004080 004081 TCAGGGCAGA GCAGCTCAGT CCTAGGTCCC AGTGACCATT CTATGGCACG GGTGTGGCTA GAATTGAGGT GCTTTAGCAC 004160 004161 CCAGCAGACC TCCTAACTTG CCATGTGGAC AAGAAGGTCC AGGCTGGTGT GTCCCTCAGC CCTAGGAAAA TGCTGGACAC 004240 004241 AGCAGACTAG AGCACTCCCA GCTGGTGCTC TCCATGTGCT CTGATATGTG CTGTGACATG GAGGGCAAGG GGTGTGAGCC 004320 004321 TGTCCTAGTG tttctttttg agatggagtc tcactctgtc atccaggctg gagcgcagtg gtgcaatctt ggctcattgc 004400 004401 aaccttcacc tcccaggttt aagcgattct cctgcctcag cctcctgagt agctgagatc acaggtgtgc accaccacgc 004480 004481 ctggctaatt tttgtatttt tagtagagac ggggtttcat catgttggct aggctggtct tgaactcctg acctcaggtg 004560 004561 atccagccac cttagcctcc cTGTCCTGGT TTCTTCTGCA GCTCCTCACA CTACCTACTC TCACCAACCA TCAGGATGAA 004640 004641 ACCCACTCTG CTCCAGGGGT CAGGACCAGA GCTCCTGCCT GTCTTCTGGG GAGAGTGAAC AAGGCTGAGC CAGGATTGGG 004720 004721 GTGAGGGCTG GCCTATTTCA GAGCCCAGCA TCCCCCACAT TGTGATGAGG GAACACGTGA CAAGAGGTGG GGGCTACTAG 004800 004801 AGCCTGGTTG CAGGGGTTCA GTGGATCTGC CAACATTCCG GAAACTGCAA GGGGAGAAGC AGACCACAGT CTCCCCTCCC 004880 004881 TCCAGGAATA AGGAGAGGTG AGGGGCCAGG AGGGTCACGG GAGGGGGTTG GAAGGACCCA AAGTGCTAGC TGGTATATTC 004960 004961 CTGAATGTGT GTGTTGGGGA ATACCCAGAG AGGGCTAAAT GCCCCTGTCC CGGACTCACC CCTCACCAGC CATCTTCCCC 005040 005041 TCCAGCCATC CCTCCCAATA GACACACAG |
Predicted Small Protein
Name | NONHSAT077043_smProtein_3656:3796 |
Length | 47 |
Molecular weight | 5037.0152 |
Aromaticity | 0.108695652174 |
Instability index | 46.7130434783 |
Isoelectric point | 9.86248779297 |
Runs | 10 |
Runs residual | 0.0560300207039 |
Runs probability | 0.0461402579051 |
Amino acid sequence | MSSGTSFLYKTLAVCRGLEILTGKLYIFIAKMTGRQGVVLVPSSWL |
Secondary structure | LLLLLHHHHHHHHHHHLHHHHLLLEEEEEHHHLLLLEEEEEELLLL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooo |