NONHSAT077318
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077318 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2029 nt |
Genomic location |
chr2-:231850640..231860763 |
Exon number |
6 |
Exons |
231850640..231850825,231851699..231852894,231856484..231856751,231857049..231857117,231859992..231860100,231860563..231860763 |
Genome context |
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Sequence |
000001 CAGGGCTTCA AGGGACAGTC TTCTCTGCAG ACACCAGCCT GGTGTCCTCC TTCATCCCAG GCTGCCAGGC TAGGCAGGGG 000080
000081 ACAGCGGCTG CCCTGGTCCT CACAGCCCTG GCTACGGGGC TGGTGACAGC CAGATCCTCA TGCTTCTGCG ACCTGAGCGC 000160 000161 TGCCTTCAGA CACCTCTCTG CTGGCGTGTT CCTGGGTCCA TGATGGAAGA AGGAAAAGTA TTTTTAAAAG ACAATCTGAA 000240 000241 GCTCATACTG TGACTGCAAC ATAAAATGTG TTCACCTGAG GAGACTGCTT TCATCGCCAG TGTGTCACAG ATGGTGGAAA 000320 000321 CCTCAGAAGG CCACAGTCCA GAGTAGGGGC TTAATGCAAG CTGCTGGAAC TGAATAAAGG TCTCTGATGG TTCTGGTTTC 000400 000401 CTGGGCACCT AGAATAAGTG TGTCACCATT TGTCCTGAAG CTGACTTCtc tgagctggat ggcaccctgg acatcaacca 000480 000481 gcccttcacc ttcacgtcac acaggaggga cactggtcca tagagaggat gcctgctctg gtcaccagct ggagagtggc 000560 000561 agaccttggg tacctgacct ttggactctg ccacacagag cacttcctca gtccctcctg cTGCCCCTGG CAGGGTGGAG 000640 000641 CTGGCAGggc agctgatcca ggaccgtcca cttccaagcc agcaggagga tggaaaagca gaatggaggg gaaacaacct 000720 000721 cctttgcagg gcgtgactcg gaagttggac acatcatttc cagccacatt ccatggacca gaattagccc tgtgaccaac 000800 000801 tctggctgcc agaaaatctg ggaaatacag tctctgcttg ggcgatcaGG CAGGCAGTTA TATCTTTGGG AACATCTCTC 000880 000881 ACCCCCTGGG AACACCTGAG CAGAAACTGA AGGACATTTA ACAGATTCTC CTTTGTGTCT AATAAGAATT GCCCCCATCA 000960 000961 GTCGGGGctg tcctaggtgc tgggtacata ggtcatctat acacaaccca gcaatggaga gcacaccatt cccaggctgc 001040 001041 agatgcagaa actgtggctc ggagagttaa gcgtcttgtt cagattcagt cagctggtag atggcaggtc tgggattgag 001120 001121 acccaggcct ggctgGTCCT GCCAGGACAC AGTATCACAG CTTTGACTGG GAGCTTCTTT TTGTTTACAT ATATTTTTTA 001200 001201 TGCTCAATGT GCATTCCTTT TGAAATACAC AGAAAAGGGA AAGAAGCCGG AGTCCTGCCT TGTGTAGGAG GGATAAGTTA 001280 001281 GAGGTGTGCA CCGGGATAAA TCTGCCTCCC GCGctggccc tggccctggc cctggccctg gccctggccc tgatcctgCT 001360 001361 CCTGATTCTG GTCCTTGGGG CCTGGGCGGC GATTCCCGGC GCTGGCTGAG CGTCACCGGC CACCAGAGGG CGCTGCCGGG 001440 001441 CTACCGGTCC GGTCGCCCGG GGATCACAGC CTCAGCGGAC AGGAAATGAT CAACAGCTTC TCCTCTCGGA TCCACGTGGA 001520 001521 CTCAAGGAAT CTCCGGGGGG CAGGACAGGT GCAGAGCCGA GTGCAAAGGT GGAATTCTAT TCCCAAAGCA CATCCCGCGC 001600 001601 CCCTTTCCTC TGCAAAGTCC CGGAACCGCG TGACTCCGGA TGAGTTATCG GGGCTGGAAC CGAGGGTTCA GCCCCCTGCG 001680 001681 CCTCTGTGTG TCCCGGTCCC TTTCCTCCAA GTAGACAGGA GGCATCTCCT CATCGGCTCA GTTCACATTC CTCCAGGGGC 001760 001761 TCAAAGGGGA CCCAGTCCCT GTCTTGGGAC ACCAAGTCAG GCAGACTCCA GGAGAGAGGA AGGAAGATGA TTCCCGCGCT 001840 001841 CAGgtgggcg ggtcctgctc cctctgttga agacctgaag acaaagattg accctcaccc ttcacctccc acctcttcct 001920 001921 caccttggaa aagaaaaaca ttcctgagag gggggatttg tcagcagaag gctttgggac tagaactgca gcatcagctc 002000 002001 ttcctggttc cccagcgccc aggcctacc |
Predicted Small Protein
Name | NONHSAT077318_smProtein_386:655 |
Length | 90 |
Molecular weight | 9838.189 |
Aromaticity | 0.0898876404494 |
Instability index | 63.4898876404 |
Isoelectric point | 9.48712158203 |
Runs | 11 |
Runs residual | 0.0196078431373 |
Runs probability | 0.0307125307126 |
Amino acid sequence | MVLVSWAPRISVSPFVLKLTSLSWMAPWTSTSPSPSRHTGGTLVHREDACSGHQLESGRP WVPDLWTLPHRALPQSLLLPLAGWSWQGS |
Secondary structure | LEEEEELLLEEELLEEEEEELLLLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLL LLLLLLLLLLLLLLHHHLLLLLLLLLLLL |
PRMN | - |
PiMo | - |