NONHSAT077386
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077386 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2147 nt |
Genomic location |
chr2-:232569883..232572029 |
Exon number |
1 |
Exons |
232569883..232572029 |
Genome context |
|
Sequence |
000001 CTTATCGCCA CCGCACTTAG CTGTCGAACT AAGAAATCGG TTGTGTGGGA AAAAGGACCA GAATAGGTGG AAAGATAGTC 000080
000081 CAGAAATTTA CCTGTGCCAC ACACAAGATG GCGAGACGTA GGGTTCGTCC CTGTGCTGCC AAAAGGGGGC GCCCGACACG 000160 000161 GAAGGCGGGA CTCCGGAGAC ACGAGCGCAC ATTGGCCGAG AGTGGCGGGC GAACACAAAG TTGACGCTTT GCGTCCTTCC 000240 000241 ATTGGCAGTT TCTTCCGTCT GTCTCTCGGT TGCAGCCGAG CTGGGAATGG GGAAAACCCG GAGTGTGGGA TCGTGGAGGG 000320 000321 CGGACGATGC CAAGTCCAGC AGAGCTTGCG CTCGGGGCTA GAAGAGAGAC TGAGTCTCCC TTCTCAGTTT CATTAGGTAA 000400 000401 TGGGCGACAT GGCTCCGTCT CCACAGCGGG GCTTTGCTGA GCTTAGCACG CAGTCTCCCG GCGGGGAGGA GGCGCGCAGT 000480 000481 GCCGGGCGCC ACTCCGTCTC CAGTACGCGT TAGGCCCGCG TTCCCAGGTG CCCGTCTGGC CGCTGGACTG TTGGCCTTTC 000560 000561 CGGAGCGAGT TTTACTTTAG GAAGAAGCCC GGGATCCCGG TAGTTTAGCC TGAAGAAACG TGGGGCAGAT GCTGGGCAGG 000640 000641 GCGGGGATAC CGCGCCAACA CCCGCTGCCC AGCGGTCGCC CTCCTATGCA GCGGCGAAGG GACGCCCGCT GTGTCTCCGC 000720 000721 CCTGCCCCCA GGCGCCCCAG TGGCTGGAGG TGGCATTCTC CACTGGACGG GCGCGCCTCA ATCCGGGGGA CTTCCACAGT 000800 000801 GCTGTTCCCG AGGACTACGC GTCTCAACTC TTTGTCGGGT TCCCTCCCTC CCACTGCCAG TCTGTCTTCA CCGCCGCGCA 000880 000881 GACCTGGGGC CGCCCTTCAC AGAGGAAGGG CTCCTTGACC TCAGCCACCG TGACCCCCTC CTTTGTGTCA CATTCTCAGA 000960 000961 GAGTTGGAGG GATTATGCGT CATCGTAAAC AGGGGGACAG AGCGCCTTCC ACCTGCGGCG CATCCATTAA GTTCCAGTTA 001040 001041 CCCTCGAGAG GATTGTTTTT TCCACGAAAC CCAGATGCAA TGAGAGCCTG GCTTGTACCA TCTCTAAGCA TCGAGGCTTC 001120 001121 CCCCTCGTCT GGGTGGTGGC CTTCGGGCAG TGGCTCCGGA AAGGCCATCA AGGCTTCCCC GTCGTCTGGA TGGTGGCCTT 001200 001201 CGGGCAGTGG ACTGTGTCCA TAGCTGAAAA CCAGACTTGA CAGTTCTGGA TTCAGGCTGT TGTGGGAGCG GGAAGGTCAA 001280 001281 ACACCCAGAA GGAACTGATG AATGTGAATT TCCCTCTAAG AACTGCTTTG CCTggccggg cgcggtggct cacgcttgta 001360 001361 attccagcac tttgggaggc tgaggtgggt ggatgccgag gtgagtggat cacgaggtca ggagttcgag accagcctga 001440 001441 ccaacatagt gaaacccccg tctctactaa aaatacaaaa attagccggg cctggtggcg tgcgcctgta atcccagcta 001520 001521 ctcgggaggc tgagacagga gaatcgcttg aatccgggag gcagaggttg caggagctga gatcacgcca ttgcactcca 001600 001601 gcctgggcaa cagagtgaga ctccatctca aaaaaaaaaa caaaaaaaga aCTGTTTTCT GACGTTATTC CCATGCAGGT 001680 001681 GCCTTTGCTA GAAGTGGGTG AGGAAGGCTC ATGCCCATCT GGTTCCAGAA CCACCACTTA AATTTCCCAA ACACTCACTG 001760 001761 AATGCCCGCT GTGTACATGG CAGTGAGCCT TTGACTCATG CTTCATTTTC ATGTACAAGG TGGGTAGGAC AGTTATGGAg 001840 001841 ttgaaccata tgaaactgat gtctatgtag gtgaaaacga actgaaaatc aacacattta caggttcaac ttCTGATATA 001920 001921 ACCCTCCTTT TAACAAATCA AAAAAGCAAA CCTAGAGATT ATAGCAAGGG ACTTGGAGTT ACCCACTGGA TCAATGATGG 002000 002001 AGCCGAGGCT AAGTCCTAAA ACAGAGGAAT CTGCATTTTT AGATGAGCCC TGGGGCAGAA GTTGCCCCCA TGGACCTCCC 002080 002081 TCTCATCCCA GGAGTGTGGT ATCTGACAGC TCATAGTGGG GGAGTTATTT AGGCTATGAA GAACCGT |
Predicted Small Protein
Name | NONHSAT077386_smProtein_974:1222 |
Length | 83 |
Molecular weight | 8713.7993 |
Aromaticity | 0.0975609756098 |
Instability index | 62.3109756098 |
Isoelectric point | 10.9160766602 |
Runs | 10 |
Runs residual | 0.0139504804139 |
Runs probability | 0.0303391626921 |
Amino acid sequence | MRHRKQGDRAPSTCGASIKFQLPSRGLFFPRNPDAMRAWLVPSLSIEASPSSGWWPSGSG SGKAIKASPSSGWWPSGSGLCP |
Secondary structure | LLLLLLLLLLLLLLLLEEEEEELLLLLLLLLLHHHHHHEELLLLEEEELLLLLLLLLLLL LLLEEEELLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |