NONHSAT077534

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT077534

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4184 nt

Genomic location

chr2+:235354318..235358501

Exon number

1

Exons

235354318..235358501

Genome context

Sequence
000001 gctgggatta caggcatgag ccaccgcgcc cggtcgatac tttctaaaat ggtaagactt tattcaggac aattgcaatt 000080
000081 ggtgtccaca gtgtcacaac agggcagaga gatcaggctc aactcccaat acaagaacaa ggcaccagac atggtggctg 000160
000161 aaacctgtaa tcccagcact ttgggaggct gaggcgggcg gatcacttga ggtcaggagt tcaagaccag cctggccaac 000240
000241 atggcaaaac accgtctcta ccaaaaatac aaaattagcc aggggtggtg gcaggtgctt gtagtagtcc cagctactag 000320
000321 ggaggctgag gcagaagaat cacttgaacc taagaagtgg aagttgcagt gagccaagat tggaccattg cactccagcc 000400
000401 tagtcacaga gtgagactcc ttaccaaaaa aattataaaa ttaaaattaa gaaaaaaaaa gaacaagggg atatttacag 000480
000481 caggttgagg ggtttcacca gatgaagatg atttcagggt cgggcttctt gctaaactga tccaggtttc aacaaggatt 000560
000561 cttgttgaag gtaggccagg gtgatctgat atcgaggatc aagggttctc aataaactga cagcaggatc cctgttgaaa 000640
000641 ctgagctttg caggcccagc aaggacaggg accaaggttg agggcttgga ggagtctgac taaagtttgg tcaaggagag 000720
000721 agtctttgtc aGGGGTTATG TGGGCTCTTC CTTCATGTTC CTTTAAAGAG CATGCCCATC TTCCGGGACT TCCTCTTTCT 000800
000801 GTTTAAGTTA CCATTTACTG TGGCTTCTCA CGCTCTTTAC GCAGCTGCAA AGGCAGAGCA AGACACACTG CTGGCCCAGA 000880
000881 AGGGCTGATG ATCCGGCAGC CTCAAGCTAC GGGTCAGGAG TGAGGAAGTG AGGCTGGCCT TGTGGGTGTG GAGTGGCTCT 000960
000961 GAAGCTTCCT GTCTCCACCC AGCCCTCTGC CCCTGCACTA AACCAAAGCC CTGCAGAGCA GAGTCTAGTG ACGCTCCTGG 001040
001041 GAAGGTGACG CTCCTGGCGG CACATGGCCT TGAGAGCTTC CACGTAGTTT GCCCTTGGTC TTGTCTCTGA GACGCCTTCT 001120
001121 GGTTGCCTCG GTCTCCTCAC ACCCCCCAGG ATCCAAGTCC AGGCCTACCT GGCTCCCGGG CACTCCCTGT GTGCCTCCCA 001200
001201 CCTCCTCCTT CCACCGAAGG CAGGCGAGGT CAGCTCTCCC TTCCCTCCTG TCTCTGGAGC CCTCGCTCCA TGCCCAGGCC 001280
001281 TGTCCCGTGG ACGTGTCATG CAGCTGCTTG CTTCATGTTC TTCTAGCTTT CTCCCTGAGC CACAGGCAAT GCTTTTCAAA 001360
001361 AGCAGTGAAA AGTTTAGCGG AGTTTTTTTT GTTTTTTTTT TGTCAAGGTA ATAAAATCTG CAGTGATAAA AATAGCTATT 001440
001441 AGAAGTTTAG GAAAATTTCA TCTTGGAGTA GAAGAATGAG GATGGACTAG GCTAAATAGT GTCCTAACAA ATACCTGTCC 001520
001521 Acccagaacc tcagaatgtg aacttatttg gaaataggct ctttgtgtat gccattctca tagatgaagt cctcctggat 001600
001601 ttagggtggg tcctaaatcc agtgactggt gtccttataa gaagaccaca tgaagccgca gggaggcacg gagaggatac 001680
001681 catgtgacca cggagacaga gactggagtg cagcatctag gaaccaaaga cagccaagga atcctggcac tgccagaagc 001760
001761 caggagagag ccggaacatt ctcccagagc ttttggaagg aacctagcct gcccacacct tgattttgga cttctggcct 001840
001841 tcagaactcc aggagaagag cttctgttgt ttgaagacac ccagtttgcg gtcatttgtt aaagcagccc ccggacacta 001920
001921 aGCCACAGTG TAGCCATATG CTTGGGCTGG GTCCCAGGGC AGCACTGACT CCTCACTTTA CCTTGTGTCA CAGCAAAGCC 002000
002001 CACAGCCAGG GAGAGGGGGT CAAACTGCAG CAGCTCTCAC TTCTGAGCAT CATAACGAAA GCCAAAGACA GCGCCATTTA 002080
002081 CCTAAATCGG ACAGCCTACA GAATCTTCCA GTCTGAAATA AGAAATGTCA AGCGTTTTAG CCATGGGAAT TATAGGGTAG 002160
002161 GGGAGATCCT TCCCCTTAAC TAGTCAGTGG TTGAAATTTC TTTTGCAGCA GAAAATTTAA GTGGTAGCTT GACTGTTTAA 002240
002241 TGTTTGCAAC ATTAGAATGC CCTAGTCTCC ACTTACTGAT TTAAAGAGCA ACAGAAATCC TTACAGGAAG AGCAGTAGGA 002320
002321 TGGCTGATTC CTGAAAGCGG CTTCCTGACA CCCTCGCCCC AGCACCCCTG GGTCCAGTCA CCATTCAGAT ACATCTTTTG 002400
002401 ATGGGTTGCA AGGAAAAGAA CAGTGTCAGG GGACAAGGCC TGTTTACCTA CAACTAACTG AAGCCCTTTG ATGAGCTCTC 002480
002481 CTCCCATCTC CAATCTGCCC CCAACCGCTG GCCGTTCCTA ACCCATCTCT TTGCAAATAA AAGTTATCAC CATCAGATCT 002560
002561 GGGTGTGCCA TTCTTCCAGT TGTGTGCACA AGAGGGTGGG AGTTCAGGGG GTTGGAATTC TTCTTTTCAA AAACCTGTTA 002640
002641 AGTTTTTCTG AAACAGCAGC CTTCCCGAAG CTTCTGCTTA GTGCCTGTTC ATCTATTGAG AGCTGATAAT AGGATGTATT 002720
002721 TTGCTTTTTT TTCTTTAAAT GGATAAAAGG ATAATGCttt ttcttttctt tctttttttt tttttctttt cttGGCCTCC 002800
002801 AGTGTCTATG CAAGTTATTT TTCAGTCCAT TAAAATGAAT CATTGTTTAT CATGTTAGTT TTCACATTTC ACAAAATGAT 002880
002881 GAACAATGGA CTTTTCTTTG TTAAAAGATG GGGGCTTCTG TCCTCGGGCA CTCGTGTTCA GAAGATAAGA CTTTCTCCGA 002960
002961 GTTCCACACA CTTCTTTCTT TTCACACATG CGTTACGTTT ATTTTCTGAC TGAAGTCTCC AAAACAAACG CTATGGCTGC 003040
003041 TGCTGAAATA GATCACATGT TACTACGGTA CAAGTGAGAC caatcacagt ggctgctttt gtttttaatt gcgaccacct 003120
003121 cggatgggtc ctgagtgctg AGCCAAAGCT CTGttttcct ttctttcttt tttttttttt ttaatctttt CAAAATTCCT 003200
003201 TTGAGGCAGG TAGGGGTAAA CCCTCAACTC ACTGTGGAAA TTCATGTTGT TGAAGAGGAT TAATAGAGAA GGGGTGGGAA 003280
003281 AAGGAAAGTC TCAGGGGTGT TTTTGTGCCT CATTAAAAGG TCACAAAGCC CTCTGTGTTC TCTCCCTCCA AGGGTCTAAA 003360
003361 CCTGAGTGTC TTTTATCCGC TTCATCAAGC TCTGCACGTC CAATCGAGCT GCGAGGGagc tccatggagc tcctgagcac 003440
003441 ttgaaatggg gctagtggga attgaggagt tctgtaagta gaaataggtt tagtacaaat aaataaactg attaaaaatg 003520
003521 tcatcaataa tattttaaaa ttgatgataa cttgacatgc aacatatttG TGTACTTTCT TGTTGATTGA TTACTTGACT 003600
003601 TGCCCTTCTG GGACCCAGAC TGCTAGAAAA CATgtctccc taagtaccgc caggaatgct aatcccatga cattccacag 003680
003681 gaaacaaaag gcgctgaggt caaactgaga aaaaccgcag cagagttcca ctggggattt gaaaagacct gagcgtagaa 003760
003761 aaggctcccg agctctgcaa taaagacagg catctaactt tgttaatatg ttaatatggc ttttcagaaa tccatgacca 003840
003841 caggactcct GCCCCCTCTG ACTTTTTTAA TGCTGGCCTA CTACCAATTA ACCTCTCAAG AAACTGCCAT TCAGGATTTG 003920
003921 AATAGTAGCA ATGGAAAGAG AAAAATGGGG CAAAGCTTTG GACCCACAGT CCAAAGGGAA GGACTCTTTT TAATCCAATG 004000
004001 GGTTATAGCA AGAGCATGTT GCGGACTCAT ATCTGGGAAC TGCAACATCA TCAttttttt tttttttttt tgagacagag 004080
004081 tcttgctctg tggcccaggc tggagtgtag tggtgcgatc ccggctcact gcaacctccg tctcctggtt caagcgattc 004160
004161 tcctgtctca gcctctcaag tagc
[back to top]

Predicted Small Protein

Name NONHSAT077534_smProtein_3815:4072
Length 86
Molecular weight 9566.1753
Aromaticity 0.141176470588
Instability index 44.5705882353
Isoelectric point 9.01922607422
Runs 9
Runs residual 0.0306595365419
Runs probability 0.0565761840272
Amino acid sequence MAFQKSMTTGLLPPLTFLMLAYYQLTSQETAIQDLNSSNGKRKMGQSFGPTVQREGLFLI
QWVIARACCGLISGNCNIIIFFFFF
Secondary structure LLLLLLLLLLLLLHHHHHHHHHHHHLHHHHHHHHHHLLLLLLLLLLLLLLLHHHHHHHHH
HHHHHHHHHHHHLLLLLEEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
HHHHHHHHHHHHHHHHHHHHHHHLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TTTTTTTTTTTTTTTTTTTTTTToo