NONHSAT077534
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077534 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4184 nt |
Genomic location |
chr2+:235354318..235358501 |
Exon number |
1 |
Exons |
235354318..235358501 |
Genome context |
|
Sequence |
000001 gctgggatta caggcatgag ccaccgcgcc cggtcgatac tttctaaaat ggtaagactt tattcaggac aattgcaatt 000080
000081 ggtgtccaca gtgtcacaac agggcagaga gatcaggctc aactcccaat acaagaacaa ggcaccagac atggtggctg 000160 000161 aaacctgtaa tcccagcact ttgggaggct gaggcgggcg gatcacttga ggtcaggagt tcaagaccag cctggccaac 000240 000241 atggcaaaac accgtctcta ccaaaaatac aaaattagcc aggggtggtg gcaggtgctt gtagtagtcc cagctactag 000320 000321 ggaggctgag gcagaagaat cacttgaacc taagaagtgg aagttgcagt gagccaagat tggaccattg cactccagcc 000400 000401 tagtcacaga gtgagactcc ttaccaaaaa aattataaaa ttaaaattaa gaaaaaaaaa gaacaagggg atatttacag 000480 000481 caggttgagg ggtttcacca gatgaagatg atttcagggt cgggcttctt gctaaactga tccaggtttc aacaaggatt 000560 000561 cttgttgaag gtaggccagg gtgatctgat atcgaggatc aagggttctc aataaactga cagcaggatc cctgttgaaa 000640 000641 ctgagctttg caggcccagc aaggacaggg accaaggttg agggcttgga ggagtctgac taaagtttgg tcaaggagag 000720 000721 agtctttgtc aGGGGTTATG TGGGCTCTTC CTTCATGTTC CTTTAAAGAG CATGCCCATC TTCCGGGACT TCCTCTTTCT 000800 000801 GTTTAAGTTA CCATTTACTG TGGCTTCTCA CGCTCTTTAC GCAGCTGCAA AGGCAGAGCA AGACACACTG CTGGCCCAGA 000880 000881 AGGGCTGATG ATCCGGCAGC CTCAAGCTAC GGGTCAGGAG TGAGGAAGTG AGGCTGGCCT TGTGGGTGTG GAGTGGCTCT 000960 000961 GAAGCTTCCT GTCTCCACCC AGCCCTCTGC CCCTGCACTA AACCAAAGCC CTGCAGAGCA GAGTCTAGTG ACGCTCCTGG 001040 001041 GAAGGTGACG CTCCTGGCGG CACATGGCCT TGAGAGCTTC CACGTAGTTT GCCCTTGGTC TTGTCTCTGA GACGCCTTCT 001120 001121 GGTTGCCTCG GTCTCCTCAC ACCCCCCAGG ATCCAAGTCC AGGCCTACCT GGCTCCCGGG CACTCCCTGT GTGCCTCCCA 001200 001201 CCTCCTCCTT CCACCGAAGG CAGGCGAGGT CAGCTCTCCC TTCCCTCCTG TCTCTGGAGC CCTCGCTCCA TGCCCAGGCC 001280 001281 TGTCCCGTGG ACGTGTCATG CAGCTGCTTG CTTCATGTTC TTCTAGCTTT CTCCCTGAGC CACAGGCAAT GCTTTTCAAA 001360 001361 AGCAGTGAAA AGTTTAGCGG AGTTTTTTTT GTTTTTTTTT TGTCAAGGTA ATAAAATCTG CAGTGATAAA AATAGCTATT 001440 001441 AGAAGTTTAG GAAAATTTCA TCTTGGAGTA GAAGAATGAG GATGGACTAG GCTAAATAGT GTCCTAACAA ATACCTGTCC 001520 001521 Acccagaacc tcagaatgtg aacttatttg gaaataggct ctttgtgtat gccattctca tagatgaagt cctcctggat 001600 001601 ttagggtggg tcctaaatcc agtgactggt gtccttataa gaagaccaca tgaagccgca gggaggcacg gagaggatac 001680 001681 catgtgacca cggagacaga gactggagtg cagcatctag gaaccaaaga cagccaagga atcctggcac tgccagaagc 001760 001761 caggagagag ccggaacatt ctcccagagc ttttggaagg aacctagcct gcccacacct tgattttgga cttctggcct 001840 001841 tcagaactcc aggagaagag cttctgttgt ttgaagacac ccagtttgcg gtcatttgtt aaagcagccc ccggacacta 001920 001921 aGCCACAGTG TAGCCATATG CTTGGGCTGG GTCCCAGGGC AGCACTGACT CCTCACTTTA CCTTGTGTCA CAGCAAAGCC 002000 002001 CACAGCCAGG GAGAGGGGGT CAAACTGCAG CAGCTCTCAC TTCTGAGCAT CATAACGAAA GCCAAAGACA GCGCCATTTA 002080 002081 CCTAAATCGG ACAGCCTACA GAATCTTCCA GTCTGAAATA AGAAATGTCA AGCGTTTTAG CCATGGGAAT TATAGGGTAG 002160 002161 GGGAGATCCT TCCCCTTAAC TAGTCAGTGG TTGAAATTTC TTTTGCAGCA GAAAATTTAA GTGGTAGCTT GACTGTTTAA 002240 002241 TGTTTGCAAC ATTAGAATGC CCTAGTCTCC ACTTACTGAT TTAAAGAGCA ACAGAAATCC TTACAGGAAG AGCAGTAGGA 002320 002321 TGGCTGATTC CTGAAAGCGG CTTCCTGACA CCCTCGCCCC AGCACCCCTG GGTCCAGTCA CCATTCAGAT ACATCTTTTG 002400 002401 ATGGGTTGCA AGGAAAAGAA CAGTGTCAGG GGACAAGGCC TGTTTACCTA CAACTAACTG AAGCCCTTTG ATGAGCTCTC 002480 002481 CTCCCATCTC CAATCTGCCC CCAACCGCTG GCCGTTCCTA ACCCATCTCT TTGCAAATAA AAGTTATCAC CATCAGATCT 002560 002561 GGGTGTGCCA TTCTTCCAGT TGTGTGCACA AGAGGGTGGG AGTTCAGGGG GTTGGAATTC TTCTTTTCAA AAACCTGTTA 002640 002641 AGTTTTTCTG AAACAGCAGC CTTCCCGAAG CTTCTGCTTA GTGCCTGTTC ATCTATTGAG AGCTGATAAT AGGATGTATT 002720 002721 TTGCTTTTTT TTCTTTAAAT GGATAAAAGG ATAATGCttt ttcttttctt tctttttttt tttttctttt cttGGCCTCC 002800 002801 AGTGTCTATG CAAGTTATTT TTCAGTCCAT TAAAATGAAT CATTGTTTAT CATGTTAGTT TTCACATTTC ACAAAATGAT 002880 002881 GAACAATGGA CTTTTCTTTG TTAAAAGATG GGGGCTTCTG TCCTCGGGCA CTCGTGTTCA GAAGATAAGA CTTTCTCCGA 002960 002961 GTTCCACACA CTTCTTTCTT TTCACACATG CGTTACGTTT ATTTTCTGAC TGAAGTCTCC AAAACAAACG CTATGGCTGC 003040 003041 TGCTGAAATA GATCACATGT TACTACGGTA CAAGTGAGAC caatcacagt ggctgctttt gtttttaatt gcgaccacct 003120 003121 cggatgggtc ctgagtgctg AGCCAAAGCT CTGttttcct ttctttcttt tttttttttt ttaatctttt CAAAATTCCT 003200 003201 TTGAGGCAGG TAGGGGTAAA CCCTCAACTC ACTGTGGAAA TTCATGTTGT TGAAGAGGAT TAATAGAGAA GGGGTGGGAA 003280 003281 AAGGAAAGTC TCAGGGGTGT TTTTGTGCCT CATTAAAAGG TCACAAAGCC CTCTGTGTTC TCTCCCTCCA AGGGTCTAAA 003360 003361 CCTGAGTGTC TTTTATCCGC TTCATCAAGC TCTGCACGTC CAATCGAGCT GCGAGGGagc tccatggagc tcctgagcac 003440 003441 ttgaaatggg gctagtggga attgaggagt tctgtaagta gaaataggtt tagtacaaat aaataaactg attaaaaatg 003520 003521 tcatcaataa tattttaaaa ttgatgataa cttgacatgc aacatatttG TGTACTTTCT TGTTGATTGA TTACTTGACT 003600 003601 TGCCCTTCTG GGACCCAGAC TGCTAGAAAA CATgtctccc taagtaccgc caggaatgct aatcccatga cattccacag 003680 003681 gaaacaaaag gcgctgaggt caaactgaga aaaaccgcag cagagttcca ctggggattt gaaaagacct gagcgtagaa 003760 003761 aaggctcccg agctctgcaa taaagacagg catctaactt tgttaatatg ttaatatggc ttttcagaaa tccatgacca 003840 003841 caggactcct GCCCCCTCTG ACTTTTTTAA TGCTGGCCTA CTACCAATTA ACCTCTCAAG AAACTGCCAT TCAGGATTTG 003920 003921 AATAGTAGCA ATGGAAAGAG AAAAATGGGG CAAAGCTTTG GACCCACAGT CCAAAGGGAA GGACTCTTTT TAATCCAATG 004000 004001 GGTTATAGCA AGAGCATGTT GCGGACTCAT ATCTGGGAAC TGCAACATCA TCAttttttt tttttttttt tgagacagag 004080 004081 tcttgctctg tggcccaggc tggagtgtag tggtgcgatc ccggctcact gcaacctccg tctcctggtt caagcgattc 004160 004161 tcctgtctca gcctctcaag tagc |
Predicted Small Protein
Name | NONHSAT077534_smProtein_3815:4072 |
Length | 86 |
Molecular weight | 9566.1753 |
Aromaticity | 0.141176470588 |
Instability index | 44.5705882353 |
Isoelectric point | 9.01922607422 |
Runs | 9 |
Runs residual | 0.0306595365419 |
Runs probability | 0.0565761840272 |
Amino acid sequence | MAFQKSMTTGLLPPLTFLMLAYYQLTSQETAIQDLNSSNGKRKMGQSFGPTVQREGLFLI QWVIARACCGLISGNCNIIIFFFFF |
Secondary structure | LLLLLLLLLLLLLHHHHHHHHHHHHLHHHHHHHHHHLLLLLLLLLLLLLLLHHHHHHHHH HHHHHHHHHHHHLLLLLEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL HHHHHHHHHHHHHHHHHHHHHHHLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii TTTTTTTTTTTTTTTTTTTTTTToo |