NONHSAT077792

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT077792

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

1531 nt

Genomic location

chr2-:240176886..240178428

Exon number

2

Exons

240176886..240176992,240177005..240178428

Genome context

Sequence
000001 AGCTTGATTT ATTCATCCAG TCATCTGCCC ATCCAGTCCC TTCTGCTGCT GAACTAGTCA TTGCTTCAGG GTCATGGACA 000080
000081 CAAAAACAGA CAAGGGTATG CCCCTCTTAG GGGCAGACAC AGAACAGTAT CAGTGGAGCG ATCTGAGGAA GCCAGTGTTG 000160
000161 GCAGGGAGCC TTCTAGATGG CCAACACCTT CTATGAAAGA GGAGGATGCT GCTGGGGTGA AGTCCTGGCC TTCTGGGAGG 000240
000241 GGCTGGAACC CGCCTCGGCG CTGGGTCAGT GCTCTGGATG GCAGCCTGGC CCCGACCAGC CTGTCCTTTC CCCCATGTGT 000320
000321 TGTTCTGAAT CTCTTTCCCC TGCGACAGAA TTCACAGAAA AAGCAAACCT AATTTTTTCC TTAGTCAAAA CTATTAAAAA 000400
000401 AGAAAAATCC CACACTTAAA GCCAGACCTC TGCAGAAGTA AATTTGGGAA TTCATTCTTG GATTTGTTTC TCTCCTGCCT 000480
000481 TAAAAGAGAA AGAAGCCTCC TAGAAGGAGC CCCACTGAAC TTGTTTGCTG TTTTCTTCAG TGAACCGCTT TCTGTGGCTC 000560
000561 TGCCTCTCTG AGAATGTTTC AAACTCTGAA ACGCAGCTGG AACACACTTG AGATGCTCCA CACAGACTAC AAAGTGATGG 000640
000641 CATGGACTGT GCAGAACAGA TGCTGTTTGC ATTAAAATAA AAGACAAACA TAATATTTGC ATTAATCGAG AACCTTTGCA 000720
000721 GGAGTATTTG CATAGAGTGG TTTATCCTTT TCCAAGAGCT GGTTACTCTT AACTAATTTC TGAGTGTAGA AAGGATAAGC 000800
000801 AATCTTTTGC TGATTATTTC TCACAAAGAA TTGCTTTCGC CCAAGTGTGT AGCTGTTTCC AAAGACGGGC TCTCCGACAT 000880
000881 GCACGTGTGA TGTTGAGTGC AGCACAGGAA GAATGGCCCA TGTGCCTGGC AGTGATTGCT GTCAGTCATG CTCTTGGGAG 000960
000961 CTTTTTGTGT TTCAGAGTAG GATTGCTGAG CTCGTACCCT GCTTTTAGTG GTACTGAACT TTGTTTCAGC AGAGTTGTGC 001040
001041 AGAGTTACTC ACACTAGACC ATATTTCAGT GGCCTCCTCT TCCTCCTTAT AATGAGAAGA AGCCAAGGCT GTGGCATGTT 001120
001121 GGCGTGTCAA GTGTTTTGGT GCCTGTGCGT ACAATTTCAG GGACAGCTGT ACTTAATTCT TATTTCATTA GTGAAGGCTG 001200
001201 TGTAAGAATA AAGACAAAGG ACTCAGAGCA AAGAAAAAAT GACGGTCTCT CAAAGAGAAG TAGAGCCCGG AGATGCAGGT 001280
001281 CATAAACCCT GCATAATTGG CTCTGAGTTT CTTAGCTGTC AAAGGAAAAA GGGAAGCCCT TTAATTTTAA GGTCTATGTT 001360
001361 GTTCTTAAGA GGAAACCAAC CAGGTGTTTT AAACAGTGAC TTTGAAACAC ACACACACAC ACACAGTGAG AAAACAAGAT 001440
001441 TACACATAGT CTCGGTATCT GTATGAACCT TTGTATTAAT TGAATATTCA GTAGTTATTA ATGTGTACTT ACATGATTTA 001520
001521 CTAGTGTTTT T
[back to top]

Predicted Small Protein

Name NONHSAT077792_smProtein_176:418
Length 81
Molecular weight 8727.8656
Aromaticity 0.1
Instability index 47.645125
Isoelectric point 4.94415283203
Runs 9
Runs residual 0.0263157894737
Runs probability 0.0419733458948
Amino acid sequence MANTFYERGGCCWGEVLAFWEGLEPASALGQCSGWQPGPDQPVLSPMCCSESLSPATEFT
EKANLIFSLVKTIKKEKSHT
Secondary structure LLLEELLLLLLLHHHHHHHHHLLLHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHH
HHHHHHHHHHHHHHHHLLLL
PRMN -
PiMo -