NONHSAT077834
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077834 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2460 nt |
Genomic location |
chr2-:241503433..241505892 |
Exon number |
1 |
Exons |
241503433..241505892 |
Genome context |
|
Sequence |
000001 CTCTAACCCT GGCAGAGGAG CCTGGACGTC GCGACTGTCA GCCCTGGCTT TCTCCCACAG GAGTTTTCAT ACTCCAGCTT 000080
000081 TTTGGTGATC AGCGCAGTGA AGTGGCTGCG CGGCATCTGC ACCCCAGCCT TCCCCTGATG CACCCGAGGG AGGGGTTCCT 000160 000161 GGCTTCACCC ACTAGGAGGT GGGTGTGGGC ATGGAGCGTT TTAGCAGGCT GGGGAGGGCA GCAAAGCTTC CAGGAAGAAG 000240 000241 CAGTGTTCAG ACAGGGCCGC GCCCAACCCC GACAGAGGAC CAGGGAGCTA CCAGTTCTCA GATGGAGCTG GTGGGCTAAA 000320 000321 AAGGTCTGAT GTGACCCACA GGTGTCCTTC AACCTGGCCG GGGCCCTGCT GCCCTTGTCC CCTTGTCACC AGGGCCAGGT 000400 000401 CAGCAGGTAA AGGGTGTGCC CTGCCCTGAG GCAAGGGCAG CCGAGGTTTT CATCAGGGTG TTGTGAGCAG GGCTGAGCCG 000480 000481 CGGGGGAAAC CGCAGACCCA GGTCCTCCCT CCTCTCCAAG CCACTGTTCC TCACCCACTA GTGGCGACCG GCGGCTGCTT 000560 000561 CCTTCCGGGT TGATGAAAAG GTTGCATGAG TCATGAGGAG CTTATCTAGA GAGGCCAGCG GCAGGCAAGC CCTCCACAGA 000640 000641 GATGGGGACT GCCCTGGGCA CCAGCTTGTG ATGGGGGCCG CGGTCCACAG CGATGGGTGG TGCCGGCTGG TGACACGGCA 000720 000721 TAGAGGGGCA GCGACCAACA AGGTGTGGCC TATGCTTGAG GCccaggtac acaaggcgtg gggagggaga aggcccttct 000800 000801 cactaccacc cccacgcttg gctgacaaaa cccgtgcttc ccatcccccc agctttgggc tctgccgcat cagagatgtt 000880 000881 cggtccccag gtgggatgct tttgcttagg aacacaatcg ggtctcactg GGAGGGTGGC TCAGACACGG CCCAGCCACG 000960 000961 GAAGCATGAG ACAACACAGG GCTGGCTCTG GCAGGTGGGC ATGAGGCTTT GTGAGGCTTG GGGGCCAGGA AGAGTGGTGC 001040 001041 CTCCTACTTC TCTCTGGTGG TGCAGTACAG GTAACGGAGG CCACAGCACC TGTGTGGGCA GCCATGCAGG GCCTGGGGcc 001120 001121 ttaaaaatga aggatcgagt catgccacca ggtgaaggcc ataagcagct taggcactgg ctgagggtag aacatggaac 001200 001201 gagtattgga aaaggcagat aagcaccaac cacagtattt tactcattga cgcatacaga atgtaaatac gcgtagttgt 001280 001281 atatattaac caatgactac gttatctgtg attcacatgt attacacaca ttttcctttt ctttccccac tcCTATTTAA 001360 001361 GGAGTGTTGA TTCTAGGATA GTCTTTAGGC CACAGGATGT CCAGGAGAGG TGGTGTCTGA ACTAGAGAAG GAATCAACAT 001440 001441 GCTTGGATGC CTCCAGTGGT GGCTTATGGG GTTCCACCCT CACACGGCGG GAGAGGCAGC ACCTTGTTGG CTTGACAGTA 001520 001521 GCTATGTGAC CTTAAGTTGG GGTGCAATGT TGGTGAAACA GAGATCAAAG TAGGAGAGGG GTGCAGATGC TGGAGGCCTC 001600 001601 CCGGGTTCCC TCACCAGGCC GTCTGTCAGC ACAGCCTCCT TCTCCCCTGC CTGTCACAGG AGGGGCTTCC CATGTTCGGT 001680 001681 GCCCAGATGA GACCAGTGAG AGGTCTGGGA GGTGGGAGGA AGGAGATGTA CTGTGGCTTC AGCAGCTGGT GGGCAGGAGG 001760 001761 CTCTGCTGGC AGCTCCAGGT GCCCTCCACA GCCAGGACAT CAGGCAGTGG GGATCTGGGT GGCAGGTCCC TGTGACTCCC 001840 001841 CTATGTCTCC TCTCCTGTCC TTGGCTCCCC AGCCTTCTTC TCCCTGCATT CAGTTTCTTT CTGCCCAGTT CCTTAAGTGG 001920 001921 TTTAGATTTT CCTGACCAAG GCTTGTTTAA TAAGCTGAGC TGACCAGAGG GAGAGGACGG AGCAGATGGT GGTGCAGGGG 002000 002001 TCCATGTGGT CTGATGCGCA GACCCTTGCC CCACCAGCAA GAGGGGACAG AGACCCTCTG GAGCTGCATT TCCGGAAGAT 002080 002081 GGGGCTTAAC TGGGAAAAAT GAAAACTCAG TGTGGAGGCG AGTGCACTGG GCGGCCGTGG TGCCGTGGGA CCATGGACCT 002160 002161 CAGAGGGCAC TGGTGGCAGG ACCGCAGAGC GGGCCCTTCA GGCCACTTCA GGGCCACTGA GGTGGAGGAT TCTCTTGTGA 002240 002241 AGAAAGCAGT AGGAAGGATG GAAAACCATA CTTCCTAGAC AGGCATCTGG AGCAGTTTCA GTTTTGATTG CTGTTATTAC 002320 002321 TACTGATAAC TGAGCAAAAG TGGTGATGAT GCTTGAGAGA AATTTCTGCA ACCCACAGTC AGCAATTATA TGTACAGCCA 002400 002401 AGTACAGCGT GTGCTCATTT CTCCCTCGAT TTTTGAATCT GCAGTTTACC AAAGCTGCCA |
Predicted Small Protein
Name | NONHSAT077834_smProtein_1586:1834 |
Length | 83 |
Molecular weight | 8808.7897 |
Aromaticity | 0.0365853658537 |
Instability index | 92.0536585366 |
Isoelectric point | 7.86175537109 |
Runs | 14 |
Runs residual | 0.034830007391 |
Runs probability | 0.0433416609888 |
Amino acid sequence | MLEASRVPSPGRLSAQPPSPLPVTGGASHVRCPDETSERSGRWEEGDVLWLQQLVGRRLC WQLQVPSTARTSGSGDLGGRSL |
Secondary structure | LLEEEELLLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLEEELLEEEHHHHHLLEEE EEEELLLLLEEELLLLLLLLLL |
PRMN | - |
PiMo | - |