NONHSAT078240
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078240 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2358 nt |
Genomic location |
chr20-:3648617..3651272 |
Exon number |
2 |
Exons |
3648617..3649647,3649946..3651272 |
Genome context |
|
Sequence |
000001 TTTCGGCCCT TTGCCACTTC CTCTGCACAA ATCACCTCTG TCACCCCCTT GAAGTTCCCA AAtgctgggc ccagcacatc 000080
000081 ttttcactcc ataccactgg tcagctgcgg tgctggctgc ccctgtgcca gggccctgcc ttaacccagt tctctgtgac 000160 000161 ctgggtggtg gcggagtggg gagtcacata atactaagca tggctgtcct aggactcacc ctgcaccagg gccctaggca 000240 000241 gggcagGCAC TCTGTGGCCA TGTCTGACAT AGCCTGGTCT TGGGAGTGCT CCGGGCAAGC CAAGGGAGAT GGCATGATTT 000320 000321 GGGCCAGAGA TGGGGGCAGA GGGCATAACA GACAGGGGCA GGGCACCACC TGGGCCCCGG GTGGCAGCTA AGAGGACCCT 000400 000401 GACAAAGCGA GTTGTGATTG AGGGTCTGTG GGCAGAGGAG CAAGGTGGCC AGAGCCTGGC GTGTCAGCAC GGAGGGGGCG 000480 000481 CTGCAGAGGG TGGCGGCTGC TTCTCATCCC CAGGCGGGAG TCTCAGGGCA GGGGAGAATG TTTTGAAGGA ACATCACAGG 000560 000561 AAATGACAAG GCCTTGGGGG ATGGGATGGG GACAGTCAAA GATGGCTTGG AATCATCAAG GGCAGCAGGG CACCCAGGGG 000640 000641 CAAGGAGAGC AGACATAGCT GCCGAAGGGG CGGACATCCA AGGTTCTTTG GAAGCTGAGC GATGCCAGCA TCTGGAGAGT 000720 000721 GCCAGGCTGC TGTCAGAGCC TGGAGGAAAT GTTAGGACTA GAGAGAGGAG GTGCCAGCCG AGGGCATGAG GCTCACTTGG 000800 000801 AGCCTGGATC CCAAGGCTCC CCTGAAGAGG GAGCAGGAAG GGAGCTGAGA GGGTGACTTG GAGCAGATGG GTGCCCCAAG 000880 000881 AAACTCAGTA AACGCAGAAC TCCCTGGGCT GGACACCATG CTGCGGGGAG GCAATAACCC ACTCAGGATC ACTGTGCCAA 000960 000961 CCTCCTGGAC TCTTATCACG TTGCTCAGCC CCAAAGATGG CCCACACAGG GACCACCCCC TGGGCGGCGT TCACCCCATG 001040 001041 GAGTTGGGCC CCACAGCCAC TGGACAGCCC TGGCCCCTGG GTGAGTGAGG CACCAGGGGG AGGTGGAGAG GGAAGGGAGA 001120 001121 AGGGAAGGGC TCATGCCTCC TGCCTCCTTC CAGATGGGCA GCACCCAGTC ACCTTGAGTC CCCTATGCCC CTCCCCAGCC 001200 001201 CCAGGGGCTC CTGCTGACCA TATTCACAAC ATTTACCCTC CACCATTTCT CCCAGACCCT GAGAACTCTC ATGAGCCCAG 001280 001281 CAGCCACCCT GAGAAGCCTC TGCCAGCAGT CTCGCCTGAC CCCCAAGCAG ATCAAGTCCA GATGCCAAGA TCCTGCCTCT 001360 001361 GGTGAGAGGT AGCTCCTAAA ATGAACAGAT TTAAAGACAG GTGGCCACTG ACAGCCACTC CAGGAACTTG AACTGCAGGG 001440 001441 GCAGAGCCAG TGAATCACCG GACCTCCAGC ACCTGCAGGC AGCTTGGAAG TTTCTTCCCC GAGTGGAGCT TCGACCCACC 001520 001521 CACTCCAGGA ACCCAGAGCC ACATTAGAAG TTCCTGAGGG CTGGAGAACA CTGCTGGGCA CACTCTCCAG CTCAATAAAC 001600 001601 CATCAGTCCC AGAAGCAAAG GTCACACAGC CCCTGACCTC CCTCACCAGT GGAGGCTGGG TAGTGCTGGC CATCCCAAAA 001680 001681 GGGCTCTGTC CTGGGAGTCT GGTGTGTCTC CTACATGCAA TTTCCACGGA CCCAGCTCTG TGGAGGGCAT GACTGCTGGC 001760 001761 CAGAAGCTAG TGGTCCTGGG GCCCTATGGT TCGACTGAGT CCACACTCCC CTGGAGCCTG GCTGGCCTCT GCAAACAAAC 001840 001841 ATAATTTTGG GGACCTTCCT TCCTGTTTCT TCCCACCCTG TCTTCTCCCC TAGGTGGTTC CTGAGCCCCC ACCCCCAATC 001920 001921 CCAGTGCTAC ACCTGAGGTT CTGGAGCTCA GAATCTGACA GCCTCTCCCC CATTCTGTGT GTGTCGGGGG GACAGAGGGA 002000 002001 ACCATTTAAG AAAAGATACC AAAGTAGAAG TCAAAAGAAA GACATGTTGG CTATAggcgt ggtggctcat gcctataatc 002080 002081 ccagcacttt gggaagccgg ggtaggagga tcaccagagg ccagcaggtc cacaccagcc tgggcaacac agcaagacac 002160 002161 cgcatctaca gaaaaatttt aaaattagct gggcgtggtg gtgtgtacct gtaggcctag ctgctcagga ggctgaagca 002240 002241 ggaggatcac ttgagcctga gttcaacact gcagtgagct atggtggcac cactgcactc cagcctgggt gacagagcaa 002320 002321 gaccctgtct ctaaaataaa TTTTAAAAAG ACATATTA |
Predicted Small Protein
Name | NONHSAT078240_smProtein_329:565 |
Length | 79 |
Molecular weight | 8004.8942 |
Aromaticity | 0.025641025641 |
Instability index | 56.2858974359 |
Isoelectric point | 9.29791259766 |
Runs | 14 |
Runs residual | 0.0458098811757 |
Runs probability | 0.0494549171019 |
Amino acid sequence | MGAEGITDRGRAPPGPRVAAKRTLTKRVVIEGLWAEEQGGQSLACQHGGGAAEGGGCFSS PGGSLRAGENVLKEHHRK |
Secondary structure | LLLEEELLLLLLLLLLLHHHHEELLLLEEEEEEEEELLLLEEEEEELLLLLLLLLLEEEL LLLLLLHHHHHHHHHHLL |
PRMN | - |
PiMo | - |