NONHSAT078312
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078312 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2666 nt |
Genomic location |
chr20+:5175867..5178532 |
Exon number |
1 |
Exons |
5175867..5178532 |
Genome context |
|
Sequence |
000001 GCTCAGCTGG TAGTTTGACC TCCGTTGGTG CAATGCCAGA GATGGGATTG TCAGCCACCA CACTGCCACC ACCCTGCACA 000080
000081 CAGTCTGGGT CCCTCCGAGA GAAGCACGCC AACCTTAACA TCCCCTACAG CATCTTGGTG CTTCACACAC CATTTAGGAG 000160 000161 GCCACCCTAA CGAGGCAAGA GGACATGGGG GTGTGCAGAA GTTCTGTTCT TAGTGAGAAT GGCTGGCCTG AGAATCCAGC 000240 000241 TCACCTCCTC TGCCCACAGT CTGGACTGCT TGTGGGAAGG CCATCTCCTC CTGTCTGGTG GTACCTCCAC TCTGGGCAGG 000320 000321 GAGGGCCTGT CTGTGACTCG CTCTGGACCC CACTTCCCGC TCTGGCCAAG GGCTGTCTTC TGTGCACATA GCTCAGGAGC 000400 000401 CTGCAGCAGT TCCCTGTATG GGTGGATGTC CTCAGGGGCC AAGAAGAGAA GAATGGGGAC AACAGAAACC TGCTTTGTAG 000480 000481 GGGATTATGT AGACTAAAAG CCTAGAAGTT CTGCCCACAT CCTTATGACG CAGCCAATCT GGAGCTTCAT GTTTCCTTCT 000560 000561 AAAAGTAGTA ACCGGGTAGA AGTGGGTGAC CCATTGAGGA CACATGATGT GAGGTATTTC TGCCGGATTC TAGGTTAGCA 000640 000641 AAGACTCAAA TGGGTGACTC ATGAATGAAG GGAGAACAGG CACAGGACTT AATGAAAAGA GTTTCTTGAA CTTAGTTTTC 000720 000721 TGAATGGGGG TGGGGAGTTG GGGCACGTGT GTGTAAGGGG AGGCTGCCTC ACTTTGAAGG AATGGTGTTG GCTAACAGGA 000800 000801 TCCATGAAAT TCCTAGGTCA GTTGAATAAT AACTGAACTA CTGGTTTGAC TGTGGATTAT TTCCTGGGTA TTAGTGGGAC 000880 000881 CCAACAGCAC ATTGCTATTA ATAGTATGGA AATAATGGTC CCTCTGTTTC ATTGAATTGC TGAAGTAATG ATAATGCCAT 000960 000961 GAACCAGGAG AAGATGGTTG TGGGGGTTTC TAGGAAGCAG CTGCTGTGAC AGGCCAATCC CAGGCTTGCC CCCGAGCCCT 001040 001041 CCTGTCCTTC TGGGTTTGTG TTTGCCTTGC CTGGTGCTTC CTCCCTCATT GTGTTGTTGA ATAGACCTAG GCAGCCTTGT 001120 001121 ATCCATAGAA AGCCTCCACT GCTGGGCCGG GGAGGGGGTT GTGGTAAGGG CCCTCTGGAA ATCAAGCAGA GAATGCCTTT 001200 001201 GCAGTGGTCT CCCGGGCATT GGGCAGGGCC TAGCCTTTTG CAGCCCCCAG AGGACCTTGC CTGCATAAAG CACTCAGAAG 001280 001281 GGTTAGCCAC CTGGTGATTT TGTCTCTAGT GAAACTGTGT TTGCCGATAA TCATCCACAT AGCCACCTCT GTCCTCGCAG 001360 001361 TTTGGATGCC TTTTTTTGAC ACCTGCGCTA GGTTCTTGTA TGCTGGCTTT TCTTAAAGGA ACAGCAGAGT AGAAAAGAGG 001440 001441 TTGAGAATGT TTTCTAGCAG GCAGAATGTG CATACATGTT TTCATGAGTG TCCTTTGGGT GCTGTTTCTT TTAAATCCTC 001520 001521 TGTGCACAGG GCTCTGGCCT TTAGTAAACT GTTTTTCTGT CTTACGTCAT GCTGACTGGG TGCTAGGGGC TGATTACAAA 001600 001601 GGGGAAGAGT TGAACAGACA TCAGGGGCCG ATGAAACCAA AGGACTAGGA GTCAGGAGAA CAAGTCAGGG ATTAGGAGAC 001680 001681 AGCGGTTTGG TTTATTGTTA TCCAGCTGGA GGACTCCTAG GGGCAGCAGC AGGAGGAATA CCAGGGCCAC GGAGGGGCCA 001760 001761 GGAGTCTCAC AGTGGAGGGC AGACTCTAAC AGATGCCAGC TGAACGCTCG CTGGCCCTGG ATGTCATACG AGTTGGGGAC 001840 001841 CAGAAATCTG GGCTCAGAGA ACCCGTCCAG GGAGATTTGA AGCCATGGGT TATCTTCTAG AGTTGATACT GATAATATAT 001920 001921 TTTAATTTTT ATTGATGTTT AATACCTTCT GAAACAGGAG GGTAAGATCA GATGGGAAGC CCCTCTGTTG AAGGATCTTG 002000 002001 GGAACCTTGG TGGTTTTTTT TTTTTTTTTG GTTTTTTTTT TTTGATCGAG CTGTGGACAT CCTTCTTAAT TCGATTCTGA 002080 002081 GGATTTGTTT AACTAAAAAG TTCCCAAACA CAGAAAGGGC CTCCCCACCT GCTTTGGGGA GCTGTCTGTG CTGGGAGTGC 002160 002161 CAGGCATCCC ATGGGACCCA TCACTGCCAG TGTCTGTGCC TCCCAGAGGT CAGCCGTGTC TGCCCTGGCT CTGTCTCCTC 002240 002241 TGTGACAGGG CAGAGCATTT CTGGTCAGTT TCTCCATGGT GCCTCCCACC CCTTTGTAAA GTGGATGGAC ATGATGGAAT 002320 002321 TCAGTTGTCT CACCCTGATA GCCTGGGTGT TGATATTCAC TTTACCCGCA CTCAGACACA GGCGACCTTG AAGCAGTTCT 002400 002401 CGGTGTGTAG AGTCCACGTG ACAGTCCCCA CAGCCTCCCC AGATAGCTGT GTGCCTGTGC GCTACTGCTG TGCCATTTTC 002480 002481 CCAACTTGGC GTTTCACTAA ATGCAGCTGA TCTCTCTCTC TGTGCACTCG TGATCCATGT TGAACAATAC ATGTAGGTTC 002560 002561 TTTTTCCACG CAATGTAAGA ACATGATATA CTGTACGTTG GAAAGCATTT ACCTTATTTA TATACCTGAA TGTTCCTACT 002640 002641 ACACAAATAA ACATATATTA AATTCT |
Predicted Small Protein
Name | NONHSAT078312_smProtein_218:496 |
Length | 93 |
Molecular weight | 9837.0751 |
Aromaticity | 0.0869565217391 |
Instability index | 52.6902173913 |
Isoelectric point | 8.47918701172 |
Runs | 17 |
Runs residual | 0.0495777291211 |
Runs probability | 0.0467179982752 |
Amino acid sequence | MAGLRIQLTSSAHSLDCLWEGHLLLSGGTSTLGREGLSVTRSGPHFPLWPRAVFCAHSSG ACSSSLYGWMSSGAKKRRMGTTETCFVGDYVD |
Secondary structure | LLLEEEEELLLLLLHHHHHHLEEEELLLLLLLLLLLEEEELLLLLLLLLLLEEEEELLLL LLLLLLEEEELLLLEEELLLLEEEEEEEEEEL |
PRMN | - |
PiMo | - |