NONHSAT078327
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078327 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
822 nt |
Genomic location |
chr20-:5414451..5426348 |
Exon number |
4 |
Exons |
5414451..5414608,5414761..5415051,5417746..5417919,5426150..5426348 |
Genome context |
|
Sequence |
000001 cgagcagctc catctacaga ttcacatgga gaagaattaa gggttcctgc caatcaccag caccactttg ccagccttgt 000080
000081 aagtgggcca ccttggaatt ggagcctcca gttcctactg acatctgact gcaacatcat gagagaccct gagtttgaac 000160 000161 cacccagctg agctgcttct gagctaaccc actgaaaccg tgaaagtacc tgaatgaaac aacacccagt agccactagc 000240 000241 acacctagct cccagatctg tttttgatgc cattcttcag taaaaggaag caaggctgct tggagaaatt gctatcaagg 000320 000321 actggggtag aaaatataca agatgaaatt ggagcatctt gtagtgcttg aaaACAGTTG GCATCTGTGT GAAGATGTGA 000400 000401 ATGGAGGAGG CAGAGTAGGC AGTGAGTGCC GCAGCCACAG CTTGTGTTCT CTGCAGCCCT GGCACAGAAG ATAGGAACAC 000480 000481 TCATGGGGGA TGCGGCCACT GTGATGTCTT CCCACACAAG AAGTGCCAAG TGCTTTTCTC ATGCTTTTCT GGATTGTCCC 000560 000561 ATGGTGGACG AGTCAGCAGG AGTGAGATGG AGCAGCACAG TAGAGGGGTA CCTGGCAAGG CCCGGAGGGA GGACCCCCTG 000640 000641 CCCCAAACAT TTCAATGATA TCAGGTGTGC CACCTCTTTG ATCCAGCAAG TGGGAAGAAC AGTCCCGGCC TCTTTGCACA 000720 000721 CAAGACCGTG ATACCAATGC ACCATCACAG GCCCCACAGG GGAGCTGTCC GCTTCCCCAC ACAGCTGCTA GGGGCTCTTT 000800 000801 TGCATGTTCC CAACCTTTCC TG |
Predicted Small Protein
Name | NONHSAT078327_smProtein_482:730 |
Length | 83 |
Molecular weight | 8860.9965 |
Aromaticity | 0.0609756097561 |
Instability index | 42.8073170732 |
Isoelectric point | 8.90728759766 |
Runs | 11 |
Runs residual | 0.00175535846268 |
Runs probability | 0.0492604904371 |
Amino acid sequence | MGDAATVMSSHTRSAKCFSHAFLDCPMVDESAGVRWSSTVEGYLARPGGRTPCPKHFNDI RCATSLIQQVGRTVPASLHTRP |
Secondary structure | LLLEEEEELLLLLLHHHHLLLLLLLLLLLLLLLLEEEELEEEEELLLLLLLLLLLLLLLH HHHHHHHHHHLLLLLLLLLLLL |
PRMN | - |
PiMo | - |