NONHSAT078331
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078331 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1857 nt |
Genomic location |
chr20-:5428969..5433259 |
Exon number |
2 |
Exons |
5428969..5430509,5432944..5433259 |
Genome context |
|
Sequence |
000001 GGGCAACACT GAGCATTGAG TGAGCGAGAC TCCGTCTGCA ATCCCGGCAC CCCGGGAGGC CGAGGCGGGC AGAACACTCG 000080
000081 AGGTCAGGAG CTGGAGACCA GCCCGGTCAA CAGGGCGAAA CCCCGTCTCC TCCAAAAATA CAAAAACCAG TCAGGCGTGG 000160 000161 CGGCGCGTAC CTGCAATCCC AGGCACTCGT CAGGCCGAGG CAGGAGAACC ACGGGAGCCC GGGACAGGGA GGCTGCAGCG 000240 000241 AGCCGAGACC ACGGCAGTAC AGTCCAGCCT CAGCAACAGA GGGAGACGGA AGGGAGGGGG AGGGGGAGGG GAAGGGATGG 000320 000321 AGTTTCACCA TTTCATCCAG GCTGGTCTCG AGTTCCTGAC CCCAAGTGAT CTGCCCGCCT TGGCCTCCCA AAGTGCTGGG 000400 000401 ATTACAGGCG TGAGCCACCG TGCCCAGCCT AGCTCCTAAA ATTAAAGTTG ATTCCATGCT GATAATGTTG ATCGCAAGCT 000480 000481 TAGATAGAAG TGCAGGTGCA GAATAAAGAC AAGACTCATT CCTATACCTA CCCAGAGACA TCTGCATACT TGACTCTTCC 000560 000561 TTTACTCTCT TTTTATTTTC AAACATCCAA TTTGTCTTAT GTAAAATGTA GATTTACCAG GCAGCAGCTA GAGTCTCACA 000640 000641 GGAATGTAGC CATTCGCCTT ACCACCTGTC TGCCCTTTTT CCTAAAAGCC TTTCCCCCAT TTAAGGAAAT GTGTAAATAC 000720 000721 TAAATCCCCT GAAACTCTCT TGAGAAAAAC AGCCACAGAT GTACCTGTGG CTTGTATTTT TCCCGGAAGC ACCCTCAAGC 000800 000801 TGACTTAATA AACCTCGATG ATTGAGATTT ATGCCTTGGT CATTCTATTC AGATGTCAGA AGGACCCATG GGAAGACTCA 000880 000881 GAGAGAAAGG TCTGTAGGAA GAGGCTAAGG AGCCCAATCT TCTCCCAGAA AATGGACGCT TCGGGTGGTC ATGAATTGTA 000960 000961 GGGCTATTGG TACTGGGGTG AGTAAAGAGG AAGAGAAAGA GAGCAAGGCC CCAAGGAGAA GGGGAAACAG GGAGGGAGGA 001040 001041 AGGGGCCATG CCCTGTCCTC CCCTCCTCCA GTGTCCCTGC CCCTCTCCAA CTTCAGAATT CCCATTGCTC CTTGAGAACT 001120 001121 CAGACACTAG CTTCCCCACC AAGGCCTCCT CCCTCTGCAT TCCCCCAGCC TGTCCATTCT CGGTCACACT GACTCCGAGT 001200 001201 CTGGTCAGCT GCCTGTATGC CTGTCTCACC CAGTTAACTT AAATTCCTTG GGGTCAGGAA CAATGCTTTC TTCTTATTTT 001280 001281 CCATGCCACA GCTCCAGTTA CTGTGACTGA CACACAGAAA TATTGGCTTG GAGTCGATTA TCTCAGGGAT GCAGCTCAAA 001360 001361 GTAAATGTGT CTTGTATAGA GTGGGCATAG GGATGCTTTA ATGAGGAACG AGCAAGTCCC AAGAGGAGCA AGGAAAACTT 001440 001441 GAGCTGCAAC CACTTTGCAT TTCAGATGAT GAATTAGAGC GGTTGTTATC GAATCTGCCA CCAGAGGGCG ATCCAGGTAA 001520 001521 AAAAGATCTT CGGGCTACTC TTCAGCCCGG TGACCTGATC TTCCCCCAAA CTCAGATCCT TGCTGCCTCC CAGAAACAGC 001600 001601 AGACACCTAA GTCCAATGTA GCTTGCCAGG ATCTCAGGGA ATGAAATTTT ATAGTTTGCT GGCATTTTCC TCAGGGGAGC 001680 001681 AGAGGCAAGA AAACAATCAA ATCCAAGTTT GCGCCACTGC ACACCAGCCT GGGCGACAAA GCAAGACTCC CGTCTCAAAA 001760 001761 AAAAAAAAAA AAGAAAAGAA AAGAAAAGAA AAGAAAAGAA AGAAAACAAT CAAATCCATG GTCTGCTGTT TACTGGATGA 001840 001841 AGAATAAGAC TGCCTAA |
Predicted Small Protein
Name | NONHSAT078331_smProtein_1640:1846 |
Length | 69 |
Molecular weight | 7942.256 |
Aromaticity | 0.0441176470588 |
Instability index | 52.3266176471 |
Isoelectric point | 10.0237426758 |
Runs | 10 |
Runs residual | 0.00655802861685 |
Runs probability | 0.0471383147854 |
Amino acid sequence | MKFYSLLAFSSGEQRQENNQIQVCATAHQPGRQSKTPVSKKKKKEKKRKEKKRKKTIKSM VCCLLDEE |
Secondary structure | LEEEEEEELLLLLHHHHLLLEEEEEELLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH EEEELLLL |
PRMN | - |
PiMo | - |