NONHSAT078528
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078528 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1484 nt |
Genomic location |
chr20+:6375370..6457106 |
Exon number |
3 |
Exons |
6375370..6375470,6402186..6402302,6455841..6457106 |
Genome context |
|
Sequence |
000001 GAGGCAGCAA CGGTGTGAGA TGGCCAGCAT CCTGGCAGTT TGACCTGATT GGATGAGGTT CCCTAACTCT GGAAAGTGAT 000080
000081 TTCCAGAGGA TGGAAGACCA CAAAGAGGGC ATTGTTCATA GCATTTGAGT ATTCCAAGCA GTTCAGGGTT TAATACCTTC 000160 000161 AGGCATAAAC ACCTCTTTAA AAAATTTACC CATTATATAT GGAAATCATT CTAAAATAGT CTATCTGATT CAAGGACTGC 000240 000241 GCTTGATCAT GTACCTAATA CTTCTCCTCA CTCGGAAGTT GATAGAGTAC ATGATTGTTC TTTGATGTTG TGATTTAACA 000320 000321 TTTTCTTCCT CTGTCATCTG ACTGTCCAAA GTCTCCATTT TAGATTGTAA CTCTTGGATG GCTGGCAGAG TGTCTAGCCG 000400 000401 TCTAGCAGTT TCTCTTTGTC TCATATACAT TTTGGAGTCA GGGTGCTTTT TGAGCATGAT GGTAATGATT CTAACCTGAC 000480 000481 ATGCCATGCA CTGGGTCTGA CTCATGAAGA CACAGGAGCT GGGCTGTAAC ATTTCACCAG GTTTTGTGAT GTGGGGTAAA 000560 000561 GGAAAGAAGG GATGGGAGGA TGACTACTGG AATGCAACTT TTACTCCTCT CCTACCTCAT CTTGTTGATG TCACAGCCTG 000640 000641 GAAAATGCTG TGCCTTGCAT TATTTTTGAA CATATAATTT GTATGCCTTT CATGTGTATA TTGATGAAAA AAAGTTTGCG 000720 000721 CTCCATCCTT GCACTGGAGG TTTTTTGCTA TGGCCCACTG GTGTTTAGCT GGGAAATGAA GTATACAAAG AACCTAATGG 000800 000801 ATTTGGGCAA TTCCTTTTAT AGGAGACATA AAAACAAGGT GAGTATATCT GGGCAGTAAA TCCTAAAGTT TCATTTAGCC 000880 000881 CCCTGCCACC CACTTAAATC AATTCCTCTA TCCAAACAGG CATAATTTCC TATTATTTTA GCCTTTATCT TCTCATAGTC 000960 000961 TTTTTCATAC CCATTGCCAA TATCCTGATT CTTACTCAAC GCAGTAAGTC TCATAACTGG TTTCCCCATG TTTAATATTT 001040 001041 TGAATCTAAT CTATTTTTCA ATTTGTTATT TGAATATTGT TATAAATACA AATTGAATTC CAAGTATGAA TAAACAGAGA 001120 001121 ATATAATAAA GAATGATCTC TAATTAGAGA TTCTGAATTA TTATAATCTA AGCCCCTAAA GTAAACCATA GATTTAAAAT 001200 001201 GATTTTTATA GTACTGATAT TTTCTCTATT TTGTTATGTG TAAATGTAAT AAAAATTTGT ATTGAAAATA ATAACCCAGG 001280 001281 TTCTTATGAA GAACACATGA TGGTGAAGAA AGGACCCAAC AATGATGTCA TTTTTTTTTT AACATTATCA ACACTTTGTG 001360 001361 GCCGTTTTAA AGCCATGTTT GCAAGTAAGT AAGTGTATGC CCCATGGACT CCATTCTTTT CCCTAAAGAG CCTGTGGACT 001440 001441 GGGTGAGAAC CTCTCATGCC ATGGGGAAGA AGCCTTCTTT CATT |
Predicted Small Protein
Name | NONHSAT078528_smProtein_503:676 |
Length | 58 |
Molecular weight | 6529.649 |
Aromaticity | 0.140350877193 |
Instability index | 43.6350877193 |
Isoelectric point | 6.51409912109 |
Runs | 7 |
Runs residual | 0.0311403508772 |
Runs probability | 0.0315441491912 |
Amino acid sequence | MKTQELGCNISPGFVMWGKGKKGWEDDYWNATFTPLLPHLVDVTAWKMLCLALFLNI |
Secondary structure | LLLLEELLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTo |