NONHSAT078545
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078545 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1629 nt |
Genomic location |
chr20+:7328114..7349144 |
Exon number |
3 |
Exons |
7328114..7328323,7341268..7341452,7347927..7349144 |
Genome context |
|
Sequence |
000001 GAATTAGGCC AAGACACAGA AATATACTGC ATGCCAAAAT GTAAAGGTGA CATGAGTGAT CAAAAGAGAG GGAAAGTGAA 000080
000081 AGGTCAAGGG AGAAACTCTC AGCTTGTAGG TACAGAACCA TTTCCATGAG GTCAGCTACA TTCCAAAGTG GCTGCGGCAC 000160 000161 TGGATGGGAG CTGTTGGGAC ATGCTGCACA GCCCAAGACA GTCTTTGAAG ATGGCTGGAT GCATGACCTT GTCATATACG 000240 000241 TAAAACATCC ACAGACTAAC TGGAAAAGGA CTTCACCTCA GCCAAAGTGA GTGCATTGCA GAATAAGTGC AGAGAGCTTA 000320 000321 CCTTGGTTTT TAAAGATATT GCAATCCGTT TTAATTGGGG ATCTCATTGC AATGTGCTCC TATGTCTTGA GACAGGGCCT 000400 000401 TCAAGAGGAT CAATATTTCC AGGATGTTGG TATTAGCATC CATTGTTCGC TGGCTAGATC TTTTCCAACA GAGCATGTGA 000480 000481 CTCTCATCAT TACAGCAGAG GAATGCATTT ATCAAAGTTA AGGAAGTCGT TTGCCATTCG GATGGCCCAA GAAGCATAAA 000560 000561 TATTTATCAT TGAGCCTTGT GAGAACTCTC TATTATAAAA AGATTGGCTA ATTTCTTAAA ACTACTCCTT CAATAAGGAC 000640 000641 CCAGGTTATG TGCCATGGTA TCTGTAGCTT TCTGGCTGGG TCAGGGTGAC CCGCACACAA CCCTGGCAGG ACACCCTTGG 000720 000721 ACACAGTATT TGCATCCCTT TGGTGTGCCA AGGTATCAAG CATTCACAGT TCACATTGAA ACCACTAAAC GAAGAGCTGT 000800 000801 GCAAACAGGT CATCAGTTTC TCCAGAGGGG AATAATCTTA CAACTGTTAC GAAGGGTCAA AGGTAACTTT CATTTTGAGA 000880 000881 TGCTAATTAC TCCAAGAATT TGATGCAGGA GGCAGCTGGT TAAAATGAAT GAGTGCTGAA GCGTTGAAGG GGAAAATCAA 000960 000961 ATAGATGGTT ATAATAAAAG TGCAATATGC AACCTAATAA GTATGCAGAG AATAAGGGAC AATATTGTTA ATAAACATCT 001040 001041 ATTAGTCAAG ATGATCTTTG TAGAGCTGGG CTCTTTAATA TTATACCTGC TAATCACATG CAATTAAATT TAAATTTAAG 001120 001121 GTGGTTGAGA TTAGAAATTC AGGTCCTCAG CCACAGAGGC CACATACAAC ATGTTCAATA GCCACATGTG GCCATTGGCT 001200 001201 ACCATATTGG AGAGCCCAGA TATAGAACAG TTTCATTACT GCAGAAATTT CTATAGGACA GCAATGACCT GGAGTGTTTT 001280 001281 GCTATTGGAG GGGTTTTGGA CTTAGTGCTT TTATATAGGA AACATGATTT TTTTAAAGAA GCCATCCCAT GGAATGCTTC 001360 001361 TCTCATTCCA GTGCTGTAGT AAGGGTTGCC CTGAAATTTG GACCTAGAAA ATTCACTTAT CATAAACGAA AAAACTGTTA 001440 001441 CTACTATCAA TAATATTTTT GTCCTGGTGA ATATTTACAT TGTACCACAC ACTGTGCTAG TTGCTTTATA CATATTGTGT 001520 001521 CATTTAATTC TTACCTTAGA GACTAAGATC TATCTGTGAA TTACTTTGAG ATAAATCAGG TTAAGAGAAA AATAAAAACT 001600 001601 GACTTTAGAC CACAAAAAAA AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT078545_smProtein_125:289 |
Length | 55 |
Molecular weight | 6154.9272 |
Aromaticity | 0.111111111111 |
Instability index | 69.6333333333 |
Isoelectric point | 9.03533935547 |
Runs | 11 |
Runs residual | 0.0410117434508 |
Runs probability | 0.0336031218384 |
Amino acid sequence | MRSATFQSGCGTGWELLGHAAQPKTVFEDGWMHDLVIYVKHPQTNWKRTSPQPK |
Secondary structure | LLEEEELLLLLLHHHHHHLLLLLLEEEELLEEEEEEEEEELLLLLLEELLLLLL |
PRMN | - |
PiMo | - |