NONHSAT078571
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078571 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1399 nt |
Genomic location |
chr20+:10002623..10004019 |
Exon number |
1 |
Exons |
10002623..10004019 |
Genome context |
|
Sequence |
000001 TATGCATTAA GGACAAATTT TATTTTATGA TTTTCATTTC GGTGAGTCAC AAGATATTCA ACACAAAATG AAACTTCACA 000080
000081 AAATTTCACA AAATGAAAAA TTCATTTCAG ATTCAATATC CACCTCCATC ATCCATATTC ATTCTTCCAA TGTCTCAGGC 000160 000161 CAGAAATTTG GAGTATGTGG CTTCTCCACC TCACACAATT TGCCCTAACT TTAATATATA CTCAGAAATT ACTGGCTTTT 000240 000241 CACTGTTTCT ATGATTCCCA TGTGTAATAT ACAATACTCA CCATGCATAC AATAATACAA TAATTCTGTG TCACACCACA 000320 000321 CCTAAATTGG TAAGTTTATA AGGTTATAAG CTGAGAGGTT TTGCTGATCT TGGCTGAGCT CAGCTGGGCA GGTCTTCTGG 000400 000401 TCTTGCTGGG GGTTCACTGA CACACAAGCA GCTGACAGTT GGCTGATCTA GGATGGCCTC AGCTGGGATG ACAGGCTGTT 000480 000481 TCCTCACCTT CCAGCAGGCA AGCCAGTCCC AAGAAAGAGA AGGGTGAAAC ATGGAGGCCA TTAATTGAGC CCATCGCATG 000560 000561 AAACGCATCT GTGACACCAT CACCGTCTGA TATCAACTCT CACCTGGATG TTTGCAATCG CCTAACTTTT CTCCTTTCAT 000640 000641 TCACTATGCT GCCTTACAAA CCTATTCTCC ACAAATCAGC TAGAGCAAAC CTTTTAAATC CTAAGTAGAA TGCTACCATT 000720 000721 CCTCTGCTCA AACTCCTGGA GAGGAGATGC CACAGTCTTT ACTATGGTCT TCAAGACCCT ATGGGAGGTA GCCCTGTCTT 000800 000801 ACAACCATAG CCTCCTACCA CTGCCCCAAC ATGCACACTG AGTTCCGGCC ACAGCATCTG CTTCCTCTTT ATTGATCTGC 000880 000881 CAAGGACATG AATGACTCAG AATCTCAAAC TTATTCTTCC CTCAGAATCC ACTGAGCCTA CTCCCTCTTT TTCTCAAATG 000960 000961 GCAACTTCTC AGAGATGCCT TCTCTGGCTA ACGTATATGT ACTAAAACCT CCATCCAGCA CTCTATGCCA TCCTTACTAT 001040 001041 GGTTTATTTT TCTTCATAGC ACCTATCAGT GGTGAAGTAT TAAATATGCA TTTTTGTTTG TATGCATCTC TCTCCCCGCA 001120 001121 CCAGTATGTG AACTCCCACC AGACTGGAGA GCGTGTTTAT TTTGTTCACT GCTGTAACTC CAGTGTCTAG AACAGTGCCT 001200 001201 GGCACACAAT AGGTGTTTAA TAATGATTTG TTAAGCTAAG CCAATGAATA AATATTCTTT TGCCCATGAG ATGATGTTAA 001280 001281 AAATTTTTCA ATTATTCATA ACTGCCTGTA AGGAATGAAT GTTAGTGAAT TACTGTGATA CCAATGAAGT TAAATGATGC 001360 001361 AATGAAGATT GGGTGGATCA CAAGGTCAGG AGTTTTTTT |
Predicted Small Protein
Name | NONHSAT078571_smProtein_974:1189 |
Length | 72 |
Molecular weight | 8014.1561 |
Aromaticity | 0.154929577465 |
Instability index | 47.1323943662 |
Isoelectric point | 6.93695068359 |
Runs | 13 |
Runs residual | 0.0345441067457 |
Runs probability | 0.0759379288792 |
Amino acid sequence | MPSLANVYVLKPPSSTLCHPYYGLFFFIAPISGEVLNMHFCLYASLSPHQYVNSHQTGER VYFVHCCNSSV |
Secondary structure | LLLLLEEEEELLLLLLLLLLLLLEEEEEELLLLHHHLEEEEEEELLLLLEEEELLLLLEE EEEEEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL LLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooooooooooooooooo ooooooooooo |