NONHSAT078834

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT078834

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1084 nt

Genomic location

chr20+:18543448..18544531

Exon number

1

Exons

18543448..18544531

Genome context

Sequence
000001 agaggttgca gtgagccgag atcgcaccac tgcactccct gggggacaga gcgagactgt ctcaaaaaaa atttttttaa 000080
000081 agtgttacct cccccacctc ttcctctcgt tcttgccatg tggtacatcg ggctacctct tcaccttctg ccctgattgt 000160
000161 aagcttcctg aggccttcac cagaagcaga tgctggcacc atgcgtcctg tacagcctac agaaccgtaa gccataagca 000240
000241 taaaccgtaa acctcttttt aaaataaatt acccagtctc gggtgttcca ttacagagat ccaaagacag actaacccaC 000320
000321 TGGGTCTAAA AAGTATAGGC CCAAGATAAT CTCAGAACTT TGGAGTCATT CTttcattcg ttcaacaaat aactatccgg 000400
000401 tacttgttgt ctatggagta gtcttctagg cattgggaat actgccaata aaacaaaaat tcctgttttc atagagctta 000480
000481 tgtgttagtt agggaagacc aacaataaca atgttagaag taaatgatat ggccgggcgt ggtggctcat gcctgtaatc 000560
000561 ccagcacttt gggaggccga agtgggcgga tcacctgagg tcaggagttt gagaccagcc tggccaacat ggcgaaaccc 000640
000641 tttctctatt aaaaatacaa aaattagcca ggcatggtgg tgcacacctg taatcccagc tacttgggag gctgaggcag 000720
000721 ggacaaattg tttgaaccca ggagatggag gttgcagtga gattgtgcca ctgcactcca gcctgggcaa cagaacgaga 000800
000801 ctccgtctca aaaaaataaa aaacaaaaaa gaaatgaagt aaatgataca ttagaaggta atgagtgcta tgtaggaaaa 000880
000881 tgaagctggA AGCTCCTATT AATTGGATGT TGGAACAGCT GGATTGATTG CAATACTCTG TTTTGAATTT GTATTCGAAT 000960
000961 ACAAGTTATT GTATTTCTTT TTGTCTCTGC CCTACATTCT AGCAGAATTC TAGCAGAGTT TCCTATCTTA AAATGTTGAA 001040
001041 CATTggccag gtgcggtggc tcacacctgt aatcctagca cttt
[back to top]

Predicted Small Protein

Name NONHSAT078834_smProtein_548:841
Length 98
Molecular weight 10836.456
Aromaticity 0.0721649484536
Instability index 52.2360824742
Isoelectric point 9.66082763672
Runs 11
Runs residual 0.0181366933944
Runs probability 0.0421303656598
Amino acid sequence MPVIPALWEAEVGGSPEVRSLRPAWPTWRNPFSIKNTKISQAWWCTPVIPATWEAEAGTN
CLNPGDGGCSEIVPLHSSLGNRTRLRLKKIKNKKEMK
Secondary structure LLLLLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLHHHHLLLL
LLLLLLLLLEEEEEELLLLLLHHHHHHHHHHLLLLLL
PRMN -
PiMo -