NONHSAT078834
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078834 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1084 nt |
Genomic location |
chr20+:18543448..18544531 |
Exon number |
1 |
Exons |
18543448..18544531 |
Genome context |
|
Sequence |
000001 agaggttgca gtgagccgag atcgcaccac tgcactccct gggggacaga gcgagactgt ctcaaaaaaa atttttttaa 000080
000081 agtgttacct cccccacctc ttcctctcgt tcttgccatg tggtacatcg ggctacctct tcaccttctg ccctgattgt 000160 000161 aagcttcctg aggccttcac cagaagcaga tgctggcacc atgcgtcctg tacagcctac agaaccgtaa gccataagca 000240 000241 taaaccgtaa acctcttttt aaaataaatt acccagtctc gggtgttcca ttacagagat ccaaagacag actaacccaC 000320 000321 TGGGTCTAAA AAGTATAGGC CCAAGATAAT CTCAGAACTT TGGAGTCATT CTttcattcg ttcaacaaat aactatccgg 000400 000401 tacttgttgt ctatggagta gtcttctagg cattgggaat actgccaata aaacaaaaat tcctgttttc atagagctta 000480 000481 tgtgttagtt agggaagacc aacaataaca atgttagaag taaatgatat ggccgggcgt ggtggctcat gcctgtaatc 000560 000561 ccagcacttt gggaggccga agtgggcgga tcacctgagg tcaggagttt gagaccagcc tggccaacat ggcgaaaccc 000640 000641 tttctctatt aaaaatacaa aaattagcca ggcatggtgg tgcacacctg taatcccagc tacttgggag gctgaggcag 000720 000721 ggacaaattg tttgaaccca ggagatggag gttgcagtga gattgtgcca ctgcactcca gcctgggcaa cagaacgaga 000800 000801 ctccgtctca aaaaaataaa aaacaaaaaa gaaatgaagt aaatgataca ttagaaggta atgagtgcta tgtaggaaaa 000880 000881 tgaagctggA AGCTCCTATT AATTGGATGT TGGAACAGCT GGATTGATTG CAATACTCTG TTTTGAATTT GTATTCGAAT 000960 000961 ACAAGTTATT GTATTTCTTT TTGTCTCTGC CCTACATTCT AGCAGAATTC TAGCAGAGTT TCCTATCTTA AAATGTTGAA 001040 001041 CATTggccag gtgcggtggc tcacacctgt aatcctagca cttt |
Predicted Small Protein
Name | NONHSAT078834_smProtein_548:841 |
Length | 98 |
Molecular weight | 10836.456 |
Aromaticity | 0.0721649484536 |
Instability index | 52.2360824742 |
Isoelectric point | 9.66082763672 |
Runs | 11 |
Runs residual | 0.0181366933944 |
Runs probability | 0.0421303656598 |
Amino acid sequence | MPVIPALWEAEVGGSPEVRSLRPAWPTWRNPFSIKNTKISQAWWCTPVIPATWEAEAGTN CLNPGDGGCSEIVPLHSSLGNRTRLRLKKIKNKKEMK |
Secondary structure | LLLLLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLHHHHLLLL LLLLLLLLLEEEEEELLLLLLHHHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |