NONHSAT078893
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078893 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1369 nt |
Genomic location |
chr20-:20235476..20239036 |
Exon number |
2 |
Exons |
20235476..20236805,20238998..20239036 |
Genome context |
|
Sequence |
000001 GTTTTTGTGG CCATCCTCTG ATACAACCAT GTTCGGCAGG AGTCACTTGG CAACTTTCAG CTGGTGGATG GACTGATCTG 000080
000081 GAGGATCTGA GATTGTTTCA CTCACATGCC CAGTGCCTTG CAAGGCTGGC TGAAGGGCTG GGATCAGTGG GGCCTGGGAG 000160 000161 GCAGAGAGCT CACCTACAGC GTCTCCAGCG TGGCAACCCC AGGGCATCAG AACTTCTCAC GTGGCACCTC AGGACTCCAG 000240 000241 GAGCGACTGC TGCCACAATC CAGAAGGCAC TGTATGGCCT CTGTGACTTG GCCTCAGAAG TCACACCATG TCACAACCTT 000320 000321 TGCACTTTGT TGGCCGAGGC AGTCACAAGG CTGCCCAGAT TCAAGGAGAG GAGACATAGA CTCTACCTCT TAGATGGAAG 000400 000401 AGGCATCAAA GAATTTGCAG CCATTTTTAA AACAGCCAGT TTTCTTTGAC TGCATGCTTT TATTTTCCCC TGTAATCATT 000480 000481 CTCAGAGTGA GATCTCTATA TAGTAGGTGC TGTCAAATGA CACGGGGGAG TGTCTTTCTC AGGTCTCTTA CTGGGAGGTA 000560 000561 CAGCACTGGT GTAGATGGGT CTTTCCTCCC TGCTGTGTGT AGAAGGCTGT CACCTGGGCT GCACCATTCT GGATGCCACA 000640 000641 CTATTACTGA CCCAGTCTAA GACATGATTA ACCCCTTTGG AGACAATGTA ACATTGCCGA CCCACATCAA GCTCACTGTA 000720 000721 TACTACAGTC TCAGCTCTTC TTCTTGCTTG CTTGGAAGTA CCTGCCCTAC CTGTCAGCTG CTAGTGACCC CCGACCCATG 000800 000801 AACAGTCCAT ACCACAGTCT TCTCATGCTC AACACCAAGC TCATTTGATT TCAGTTGGTA CATTTTTGTT CTTCCTCTTT 000880 000881 ATGAGGTTCC TCAAATCCAG GCCTGGGGAA GGCATCTCTC TGCTGCTCCA TGACCGTCCA TGAGTCATGG AGAGTGGCCC 000960 000961 TGTGATCTCA GAGGGGTTTT CAAAACCAGA GTGTGTTTGC CAACAAAAAT GATCAACATT GATTGGAGGG CTGGAGAAGG 001040 001041 AGTTATAGAG TCTGGAAAGT GAGCCAGCTA AATCTTCATC TTCGAAAATG GAGAGGTTGT AGATAATGTC TGAAGTTGAC 001120 001121 AGAGCAAGGA AGGACATTCT ATAAACATAT TACTGTATTT GGAGTTATGC AGGTAGCCAC TGAAAAACTA AGAACAGAAA 001200 001201 TGCTTCAAAC TGGTTGCCTC TGGAAAGAGA GCTGGGAGGA AGAGTGGGCT GGGAGAGACC AGCTCTCCTC ATGCTTAGCC 001280 001281 GTGCAGTACA ATGTAGTATT TTACCTTGTG CATGGATTTT GTAATAAGAA ATAGCGATGT GCATTTGGAT ATTAAAAACA 001360 001361 TTACACAAC |
Predicted Small Protein
Name | NONHSAT078893_smProtein_1166:1333 |
Length | 56 |
Molecular weight | 6485.3848 |
Aromaticity | 0.127272727273 |
Instability index | 58.0274545455 |
Isoelectric point | 5.66778564453 |
Runs | 8 |
Runs residual | 0.00606060606061 |
Runs probability | 0.0396021021021 |
Amino acid sequence | MQVATEKLRTEMLQTGCLWKESWEEEWAGRDQLSSCLAVQYNVVFYLVHGFCNKK |
Secondary structure | LLHHHHHHHHHHHHLLLLLLLLHHHHHHLLLLHHHHHEEEEEEEEEEEEEEEELL |
PRMN | - |
PiMo | - |