NONHSAT078893

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT078893

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

1369 nt

Genomic location

chr20-:20235476..20239036

Exon number

2

Exons

20235476..20236805,20238998..20239036

Genome context

Sequence
000001 GTTTTTGTGG CCATCCTCTG ATACAACCAT GTTCGGCAGG AGTCACTTGG CAACTTTCAG CTGGTGGATG GACTGATCTG 000080
000081 GAGGATCTGA GATTGTTTCA CTCACATGCC CAGTGCCTTG CAAGGCTGGC TGAAGGGCTG GGATCAGTGG GGCCTGGGAG 000160
000161 GCAGAGAGCT CACCTACAGC GTCTCCAGCG TGGCAACCCC AGGGCATCAG AACTTCTCAC GTGGCACCTC AGGACTCCAG 000240
000241 GAGCGACTGC TGCCACAATC CAGAAGGCAC TGTATGGCCT CTGTGACTTG GCCTCAGAAG TCACACCATG TCACAACCTT 000320
000321 TGCACTTTGT TGGCCGAGGC AGTCACAAGG CTGCCCAGAT TCAAGGAGAG GAGACATAGA CTCTACCTCT TAGATGGAAG 000400
000401 AGGCATCAAA GAATTTGCAG CCATTTTTAA AACAGCCAGT TTTCTTTGAC TGCATGCTTT TATTTTCCCC TGTAATCATT 000480
000481 CTCAGAGTGA GATCTCTATA TAGTAGGTGC TGTCAAATGA CACGGGGGAG TGTCTTTCTC AGGTCTCTTA CTGGGAGGTA 000560
000561 CAGCACTGGT GTAGATGGGT CTTTCCTCCC TGCTGTGTGT AGAAGGCTGT CACCTGGGCT GCACCATTCT GGATGCCACA 000640
000641 CTATTACTGA CCCAGTCTAA GACATGATTA ACCCCTTTGG AGACAATGTA ACATTGCCGA CCCACATCAA GCTCACTGTA 000720
000721 TACTACAGTC TCAGCTCTTC TTCTTGCTTG CTTGGAAGTA CCTGCCCTAC CTGTCAGCTG CTAGTGACCC CCGACCCATG 000800
000801 AACAGTCCAT ACCACAGTCT TCTCATGCTC AACACCAAGC TCATTTGATT TCAGTTGGTA CATTTTTGTT CTTCCTCTTT 000880
000881 ATGAGGTTCC TCAAATCCAG GCCTGGGGAA GGCATCTCTC TGCTGCTCCA TGACCGTCCA TGAGTCATGG AGAGTGGCCC 000960
000961 TGTGATCTCA GAGGGGTTTT CAAAACCAGA GTGTGTTTGC CAACAAAAAT GATCAACATT GATTGGAGGG CTGGAGAAGG 001040
001041 AGTTATAGAG TCTGGAAAGT GAGCCAGCTA AATCTTCATC TTCGAAAATG GAGAGGTTGT AGATAATGTC TGAAGTTGAC 001120
001121 AGAGCAAGGA AGGACATTCT ATAAACATAT TACTGTATTT GGAGTTATGC AGGTAGCCAC TGAAAAACTA AGAACAGAAA 001200
001201 TGCTTCAAAC TGGTTGCCTC TGGAAAGAGA GCTGGGAGGA AGAGTGGGCT GGGAGAGACC AGCTCTCCTC ATGCTTAGCC 001280
001281 GTGCAGTACA ATGTAGTATT TTACCTTGTG CATGGATTTT GTAATAAGAA ATAGCGATGT GCATTTGGAT ATTAAAAACA 001360
001361 TTACACAAC
[back to top]

Predicted Small Protein

Name NONHSAT078893_smProtein_1166:1333
Length 56
Molecular weight 6485.3848
Aromaticity 0.127272727273
Instability index 58.0274545455
Isoelectric point 5.66778564453
Runs 8
Runs residual 0.00606060606061
Runs probability 0.0396021021021
Amino acid sequence MQVATEKLRTEMLQTGCLWKESWEEEWAGRDQLSSCLAVQYNVVFYLVHGFCNKK
Secondary structure LLHHHHHHHHHHHHLLLLLLLLHHHHHHLLLLHHHHHEEEEEEEEEEEEEEEELL
PRMN -
PiMo -