NONHSAT078918
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078918 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
6571 nt |
Genomic location |
chr20+:21128344..21134889 |
Exon number |
1 |
Exons |
21128344..21134889 |
Genome context |
|
Sequence |
000001 GTTCTTTCTA AGGCACAGAA TAGTGTGTGA TAAAGTGCCA GTCACGTGGG ACAAACATGA GCAATGAGAA GAAAGAAGAT 000080
000081 TCTGCTTCCT GTGAATTGAG TAATCCCAGC CCTGGTGGAG GAGGTGGTGT GTGAGCTGGC ATAGAAGGAT GTGCAGGATG 000160 000161 CCAGTCAGTG GTAGAAAATG AGCTTGGAAA GCTACCTTGT GGGATTTGGT ACCTGGAACT ATGGTCCCAG GCTAAGAACT 000240 000241 GAGATTTCCT CCTGGAATTT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGG CAGCAGATGA AGGAAGGACT 000320 000321 TGTGAGCAGA GCAGTCACAT CCCATGTGTG CAGCTGCGGG AAGATGAGGC TGGCAGTGCT GTGCAGGATG AGCCTGGGGA 000400 000401 GGAGTACGTG GAACTGAGGA AATCAGGCTC CATTCAGACA GGAGGAATTA ACAGAATGGA GGACCTGTAT TGGGGATGGC 000480 000481 CATTGAGGTG GAAAACACTA ACAAAGGGGA GAGGATCTAT CAAATTGGTG ATCATTCTGA ATTATAAAAA GGTATTTTTT 000560 000561 AAGTGGCTAT ACAGCTTTCA ACCATAGGCA GTAACTTGGA TGCCAAGAAA AGTCATCAAG TGGTGTGTGT CCATTTTTTA 000640 000641 AATATAAAAA CTCTGGCTCA GTTTTGGTGT AGGACATCTA TTATTTGCTT GCATCCAGTA GTTGCTCTTT AGAATCATAC 000720 000721 ATTCGCTTAG AAGGATTAAT AGTTAGTCTG TTCATCTGCC ATGCTTGTTT CCACTATTAA TTTACTTAGT CAGCTTACAA 000800 000801 AAAATGTGTC TTACCAAAAA GGCACATTTC AAGCCCCACT CAGATCCTCA CAAATTTTAC TATAGTAATT CTTCACCTCT 000880 000881 ATTATATATA TTGTTATTTT TTATTTTGGG GGCAAACTCT GTTTCCAGAC ATGTTCTTCT GGTTGAAGAA CGGTGACTAG 000960 000961 AGAATATACA TAAAAACACA TAAAAATGTA TGTCCTCAAG AAAGATTGAG ATGGCGTTTT TGAATGACAG TATACATTTG 001040 001041 GGGATAGGGT TGTAAGGTTT CTTTGAACTA TTATGCTGTG AAATATATTC TACTAGAAAT AGAAGCAAAC TGATCATACT 001120 001121 CTGTCAGGGA TGGATAGGTG TGGAGGACCA GGGAATTTCA TCACAGAGCT GAAGGCTTGT TGAGGAGCTT CACTTCCACT 001200 001201 GTGGTAACCC TCCCTGCAAG GATCAGGTGG GAGAATGGTT ATAAAGGTGT TATTCCCACT TTTAATACTG GTAGTAACAA 001280 001281 TGGGTAATAA TCACTGCACT TTTACTTTGC TAGGTGCTGC GTTAACACTT TATGTGTATC AACTCATTTA ATCTTCTCAA 001360 001361 CAACCCTGGA AGTAGAGGAT ATTGTTGTCC CCATTTTATA GTAAGGCTCA GAAAATTTAG TTAACTTGCC GAAAACTACA 001440 001441 CAACCAGGCA GAACCAATAT TCAAACCCAG ACCACTGGAC TTCAGCATCC ATGCTGTTAA CCACCTTGCA GCAATGCCCT 001520 001521 CTAAGGTAGT ATGGGTAAAA GATAGTATGG GTAGCTCTTC AAAAGTTGGA GAAATTCCTG GTGAAATAAA AACAACTTTA 001600 001601 AATACTGCAT TTTTACCTAG ACTTGAGGGA GGAAATGGTC TTCCTTGGTG CTGTAGTATT TGAGCTGAAT CAGGTGAGCC 001680 001681 ATGGCAAGCT GAGGACCCGC CCCCTAAACT GCCCATGTTT GCAATAAAAG AAGCGTCCGT TTCGGTTGGC TTTGTTGGGC 001760 001761 AGAAGAAATG CCTTACAACT CGACTGAAGA AGAACTTGAA GGGAGAAAGC CTGCACGGCC ACAGGAGGCA GCTGTGTGCC 001840 001841 TGGTATGCAG GGATGAGCTC TGCAGTGGCT TTAGCCACGG ATCTGAGCAT GTGTCCGAGG TGCTCCCAGG AGCAGTGCCA 001920 001921 CTGCAGGAGA GGCACACGAC AGAGAAGACA GCACCCCAGT ATGAGATGAT GGAAAGGGTT CTTCCATTCC AGATGCGTTC 002000 002001 CCAGGATCTG AGCACCATTC ATAAGACCAA GGCAGCCACT GTAGGACCTG GCTCATCTCC AAGGAGTAAA GGGACCAGAT 002080 002081 ACCTTGTGTG GGGGAAACTT GATTGAAATA AATATTGCAG CAAGGGAGAA AGGAATCCTA AAACTATACT GAAAGAGCAA 002160 002161 GTGACTTAGG TTGGAATCCC CTGGGAAGGA CCCTAACACA AGGATTTGAG TGTAAGTAGT TTATATGGGA GGTGGTCCCA 002240 002241 GGAAGCACAG ATAGAAAAGA GAGGAAGATG GCATGGGGAA GGGAAAGCGG GCTGTAAGAG TGTGTGATTG AGTGGGTTAT 002320 002321 CACTCATAGC ACCTGGTGCT CAGTCCCATT GGGGAACCTT GGATGACTGT GTAGGGCATG CCTCAGGGAT ATCCCATTCA 002400 002401 AGGAGTAGGA AAGGGAGGTT TTTCCCCTCC AGGTCTGTCA CTACCAGAGT GCCACGCCTG GCTCCTCTTC TGGTGCTGCA 002480 002481 CAGCAGCTGA GAGAAACGCT TGGGCCAAGA GGCACAGGTG CTTAGAGGAG GACACTGGGC AGGTACTGGA ATGATGAGGG 002560 002561 CCCAGGGATA TGGGCCCGCC CTCTCACACC TGCTAAGGGA AATAACAGTG GGTGGAGGAG GTAGAGGTTA TTCCTTTGAG 002640 002641 TTCTCTGTAT AAGCCCGATT TCTTATCCTT ATTAGCCCAC AGTGCCACCT TCACCAGCAG CCTCCTTGAA TCACTGCTCA 002720 002721 ACTATAAACA ACACAAAAAT CTCCCTAGAC GGGGGCTCTG AGCAGTTGCC TTCACGGGGA ACGTGGCCCT CGGTTCTGCC 002800 002801 ATTCTCAAAG TTATGGCTGT ACTTGATTTA GACAGAGCCA TGACAAGTCA AAAAGTAGCC TCTCTGTGTT CAGCTGGACC 002880 002881 TTTTTATATT AACTGATTTC TTATTTATAT GTGTTTGTAT TCAGAAAACA ATTAGAAATT AACCCGAATT ACACAAATTG 002960 002961 TATTTCAAGC CCTGGCCCTA AAACTACATC TGCAGATCTG CAGACCTTTT TTTCAAGAGA GGGTAGAACA TGCTCTTCTC 003040 003041 TCCCAGCTCA CTTGACAGTA AGCTTCCACA TGGCAGGGCC CAGCCCCTTC TTGCCTGCCA CACCACCCCA CAGCACCCTG 003120 003121 CACCTGGTGA GTGATGATAA CCTGCTGACC TGAAAGGAGG AAGAGGGGTG GGCTGCTCTC TGAGTGAAGG GTACTCCCCA 003200 003201 TTTCATGTGG TGTTCGAGGG CAGATGACAT TTGGACTCTC CACTCCTGCT TTTGGGGGTG CCTTCCAAGG AGCTGGTGGG 003280 003281 GAGTGTGGCT CTGATGGACA GCTCCCCCAT GGGTCTTTCA GGCACTATTC TAAGGATTTT ATATAATATA GGCGTATAGA 003360 003361 AATACACATT GGTTACAGCA ACCTTACAAA ATAAGAACTA TTTTAATACC CATTTTACAG ATTAAGAAAT GGGAGCTCAA 003440 003441 ATAAGTAACT TAATTTCTTA GTCACACAGC TAGTAAGTGG CATACTGGTC TGGAGTCTTA ATAAATACAT CAGTCTGCTT 003520 003521 TTCAGTTACT GGAAGAAAGG ATTTACTTAG GAAAATGGTG GGAGAGGGCC TTTTTTAAAG GTATTAGCTA CTCTCTCATA 003600 003601 GTCAAGAAGG AAAGACAGTA TTTTTATAAC TTACCCATTG TGGGGACATT TGGCTAGCCA GCTGTCTTCC TTTGCTCTTC 003680 003681 TCTGTGGCAG TATTCTGTGG CAAGTGTATT ATGTGACAGA GGCTCTAACA AGTGAGAAAA TCGTATTCAC AGATAGAGGT 003760 003761 GCCTATCGTG TAGTGGAATG AGGGGGAAGA GAAAAAAAGT GGATGAGAAG GGGAAAAGAA ACGTAAGTCA ATTTAACAAG 003840 003841 AAAAAGATAA ATTTTTGTGG GGAAACACTG TTTCTTTTCT CCTTTTTGAT AGTAGAAAAG GATTTATAGA AGCTCCATAG 003920 003921 GAGAACGAGT ATTGAGTTCT TGTTCTTTAG AAGACTTTCC AAATTCATAT AGTCCATGAA ATACTGTATT ATTAGAAAAA 004000 004001 GATATACTTC ATGCAGTCTT AAAAAAAAAG TTAGTGCCTA GAACTTTCTT GGAAAAGAAT CTGGTAGTAA CAGTCACGAT 004080 004081 GAATACACAC ATATGCTTTG TGCCAGCAGT CCCACTTTTG GTAATCTGTG CCCTAGAAAG AAAATCTTTT GTTCAAAACG 004160 004161 GCAAAAATAT AGTCTGCGTG TTGCAACATT ATTTGTAGCA GCAAAAACAC AGAAGCAGCC TGAATGAGCA GCTGCAGAGG 004240 004241 AGAGGCTGAG CTAGGGAGAG AGAGCACCCT CATGATCAAG TATTCTGCAT ATGGCGCCCA GAATCCAGTG CGTTCCTCAT 004320 004321 GATCTGGGCA GCGTCCAAGG AATATTATTA AGAGAGCAAA GCAGGTTGCG GAGAGTTGCT TACAACATGC TCTCACTTTG 004400 004401 TACAAGTGGC CAAACCTTAC CAGCAAGGAA TTAGTTGTCC TGGGTTTGAA GGAAGGTGTG AATAGGCATC CTAACTGGTT 004480 004481 TGCTTCAGTT ACTTCATGGA GGGGAGAGGG AGGCAATGAG CTGGGGAAAA TAAGTAACTT GTTCTTTACA TCCCTTTGCC 004560 004561 TTATGTCTCA TTTCTATAAT TTAATAATTT TTATACGATT TTAAAAATTA AACCTATGAA GAAGGGATGA GCAGGTGGTT 004640 004641 AGTTCATTTT AGGAAGAAGG AGCCTGCTTG TGGTTGAGAC TGTTCTTTTA ATTGTGGGGG AGTGTGAGTT GCTTACGTCC 004720 004721 TTACTCAAAT CCCTCAGAAT TATAGAAAAT TGGAGGTGCC TTTCTATCCC TCTGATGTAG TTCTGCATAT TTCTTTTGTG 004800 004801 AATGGAGATC TCTAAGAGAG TTTTATCCTG AGTTACCCTA TTTGGGGATG GTGGAGCATA TACAGGGGAT ATTGAATTGT 004880 004881 ATTATAAAAA GAAAGGGCTG TTACCTTGAC AGTTTTAGGT ATTTGTTAAG CCTCTTAGGA AGTGTTACTT GAAAACCATA 004960 004961 ACTTAACTTT GTATTACTTT GACCAAGACA ATTGCTTAGG CCTACGGATG TGAAACAGTG GTTTTGGGGT GTTCTGTTTA 005040 005041 TTTTGTGAAA GTTACCTGCT GTCACTATTT TGGAATGCCG AATTTCTCTT GAAGCTCATA CCTGCTTTTC TCTTACTCTT 005120 005121 CCATTTACCC CACATAGACT AGGTTTTATT TATCATATAC AAGTTCTATT CAGGGTCTAT CTTAGTGAGA TCAGATTTTG 005200 005201 AGTTATTTGA AGTTAGAAAT TAGGCACAGG CTTCAGATTC ACTATTAGGG ATTTTTATGT TTGTTTTTAA AAGCTGTGGT 005280 005281 TCAGTAATGC AATTTGAGTT TGACTGACTC AGTTTTGAAT ATTGTAGCAT AAGAGGTTTG CATTGGAGTC CTGGTATCTG 005360 005361 AGTTTAAATC CTGGCTCTGT GAACATGGAC AAGTTGCTCA ACCTGGCTAA GTCTCATAAG AGTAGGGCTA ATAATAATGA 005440 005441 TTGTTTTCAT AATATAAATC TCTTAGCTCC TCCTTGTCAC CTCGTACATG CTTGATAAAT GTTCCCTGCT CTTGATGCCA 005520 005521 CCGTCACCAC CATCATTACC ATTGTTGTTC TCCACTAGGG TAGCCTTACT TTGATCCTGG ATTCTTGCCA CTTATTTAAG 005600 005601 ATAGTGAAGA GGTTGGTGTG GGGGTAGGGA GACTACCTAT GAATTGAAGA AATAGGAGGT AATAGCACTT GATGGTGACA 005680 005681 ATTCGTAAAG ATTGATTTTG TGCAAGATAA TTTACAGAAT ACACCATTAA AGCCTAATTT AACAGATATA TCTTAAATTT 005760 005761 AGATAGTTCC AATAACTGTT GAATTTCATG GCCAGAGATA TCTCTCGATG GTCTAAGTTG TGAGATTTTG GTGATGACTA 005840 005841 CATTTGTCAT GGTGGCTACA TGTAAGAAGA AGACTTAAAA ATCACAATGG CATACTGTAT TAGTTTGCTA GGGCTGCCAT 005920 005921 AACAAAATAC CACAAACTGG GTGGCTTAAA CAACAGAAAT GTGTTTTTTG AAGTTCTGGA GGCTGGAAGT CCAAGATCAA 006000 006001 GGTGCCAACA GGGTCGCTTT CTGGTGAGGC CTTTCTCCTT GAGTCATAGA AGGGGCCTTC TCACTGTGTC CTCATGTGCC 006080 006081 TTTTCTCTCT GTGCATGAAC TGAGAGATCA TTGGTATCTC TTCCTCTTAT AAGGACACCA ATTCTATTGG ATTAAGGTCC 006160 006161 CACCATTATG ACATAATTTA ACCTTCATTA CCTCCTTTAA GGCCCTATCC TTTAAGCCAC AGTGGGGATT GGGACTTCAA 006240 006241 CATATGAATT GGACACAATT CAGTGTGTGA TACGTGTATC ATGTAAAATA TGTATAATAA TTTTATAATA AACATATAAC 006320 006321 TTCAGGATTG TTGGATGTAA ATTATTGTTA ATGGATTTTT AAAAATCTTC TCAATGTGAC TTAAGAACTT GCTTACATAG 006400 006401 AAATTAAAAA CAATAATTGT ACCATGTGAG AAGCTGAAAA TTTGGTCTAA CAGCTTCATT TCTGTTCTGC ATTTAACTTG 006480 006481 CTGCTTCTCA TTCCCTTGTC TGTGAAGATA ATAAGAAGAA GAAAAATAAA GATTTCCTTA GCATTTTGTA AAAAAAAAAA 006560 006561 AAAAAAAAAC A |
Predicted Small Protein
Name | NONHSAT078918_smProtein_803:955 |
Length | 51 |
Molecular weight | 5848.7968 |
Aromaticity | 0.14 |
Instability index | 51.9602 |
Isoelectric point | 9.36016845703 |
Runs | 7 |
Runs residual | 0.0246783625731 |
Runs probability | 0.0713402478108 |
Amino acid sequence | MCLTKKAHFKPHSDPHKFYYSNSSPLLYILLFFILGANSVSRHVLLVEER |
Secondary structure | LLLLLLLLLLLLLLLLLEEEELLLHHHHHHHHHHHLLLLLLLEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiii |