NONHSAT079031
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079031 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1604 nt |
Genomic location |
chr20+:23052184..23053787 |
Exon number |
1 |
Exons |
23052184..23053787 |
Genome context |
|
Sequence |
000001 CATATTTAGA TATAAGCAGG ACCAGAATAA CATACCTAGA ACAGATACTG ATTTTCTTGC ATTCATGTAA TAATCATTTA 000080
000081 AAATTCATAT CTGCTTTACG CGAATAGATA TAAACATAGA GCTAAGTGCT CCTACAAGAT GAATTTTTAG TAGGCTAAAC 000160 000161 AGCACAGCTA AAGTCTCTTA TGAACCTCAT TTCCCCAACA TATCTTTCAT CTCTCTCTCT TTTTGGTTTG TTTCTTGTTT 000240 000241 GTTAAGCTAA TGGGTGTATT AATTCCATCC CAATGTGACT CCAAATTTTG AAATTATAAG GCCCAAATGA ATTATTTTTT 000320 000321 CTTTGCTCAA ATAGGATACA TACCTCATCT GAAGACAATT CAACATATAA CAAAAGTTAA TGAACGGCAT TTCACTGCAG 000400 000401 TCACAAACCC ATTAAGCATC AAATCCAGGC GCTGTGAACA TCAAAGAAGT CAAACTGGGC AACTGGTCTC TCCTGTGCAA 000480 000481 TGGGAAAACC TCCTAATGAA GGGCCATGAC TTTATTGTTG ACACCGATTC CACTTCAAAC TTGGCGTCTG CAATCTCTGC 000560 000561 CAGAAGATTT TCCGAGGTTG TTTTTAAGTC ATAAAGTTAA ATAACATGAA ATGTTGTCTC CATAGTAAAA GATGCTTTCC 000640 000641 TAAAACTGAA GGGCCTCTAG CCAAAAGACC TACAGCCAAA AAGCAGGGTT TGGCTGTGGC CATCTCTAAG AAAGAAATGT 000720 000721 AGTCAGATGA TTCAAAGGAA AATGGGTAAA CAAAAAAAAA CAAAGCTGCA AGTTTAAAAA GTCAATACTC AGGATTGATG 000800 000801 AAAGGAAAGT GGCCTTGGAA CACACAGAGG TGACCGCTCC TTCATGATGT GTGTGTGTTT TGATGGAGGC CAGTATAATT 000880 000881 AGGGATATTC ATGATCCCTG TGGTGCTTTG GTGGGAGGTG GAGGAGGACA GTCAGAGACA GATGTCTTCC CAGTCTCCAG 000960 000961 TGCTGAGCAG AGGATTTGGT AAAGCAACCG GCAGTGGATA AAGTGTAGAA AGTACAAAAC TAACTCCAGC CCACAATAGT 001040 001041 CATTCACTTT TTGATACCAC TGAAATGACG AAGTCAAAAG CAATCATGTT TCCCACTTCT AGAAAAATAT TCAGGTCACA 001120 001121 ATTTGTAAAT CTTTTGTTTA ATTTATAACA ATGATTAGCA GCAtttaaaa atcaacttta ttgaggttta atttgcatac 001200 001201 aataaaatgt acccattttc tgtgtggtct aaggagtttt gacaaatgca aacgcccatg taaccaacac ccaatcaaga 001280 001281 cacaagtatt tccttcattc cacgaaggtc cctcaaggtc ttttgctccc aaccctcacc cccactctca cataaccatt 001360 001361 gaactaccat ccatcactgc ggattagttt tacctcttct agaatgtcat agaaatggaa tcaggcagtg tccagctaat 001440 001441 tttgttcctt tgtgtctggc tttcttgctc attgtgtatt tcagacgcct gctccttttc cttgataagg gatatcccat 001520 001521 tgtgtgcatg acccacagtc ttcacccagc tacctaatga tgaatgtctg ggttctttcc agatcgaagc tgtataaata 001600 001601 aacc |
Predicted Small Protein
Name | NONHSAT079031_smProtein_605:721 |
Length | 39 |
Molecular weight | 4216.1397 |
Aromaticity | 0.0263157894737 |
Instability index | 53.3894736842 |
Isoelectric point | 10.0488891602 |
Runs | 7 |
Runs residual | 0.0115997229917 |
Runs probability | 0.0289953819365 |
Amino acid sequence | MKCCLHSKRCFPKTEGPLAKRPTAKKQGLAVAISKKEM |
Secondary structure | LEEEELLLLLLLLLLLLLLLLLHHHLLLEEEEEEELLL |
PRMN | - |
PiMo | - |