NONHSAT079033
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079033 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1896 nt |
Genomic location |
chr20-:23053705..23061258 |
Exon number |
4 |
Exons |
23053705..23055175,23057266..23057366,23057602..23057802,23061136..23061258 |
Genome context |
|
Sequence |
000001 GTCACTGTCG GCCTTGCAAG GCCACCTGGA GGCCTGTCTG TTAGCCAGTG GTGGAGGAGC AAGGCTTCAG GAAGGGCCAG 000080
000081 CCACATGCCA TCTTCCCTGC GATCAGGCAA AAAAGTGGAA TTATGAAATT TGTGAGGTGG AAGAAAATAA TTGGGACGTC 000160 000161 TACCTTCTTT CTCCAGGGTC TGGCTTTCCC AAAAACGTTA TATCACAAAT GTTTTACTTC ATTGTTGAAA TCGCTGCCTC 000240 000241 CTGTCCCACG TGTGTTTGTC GGGGTGTCAC GCCCTTGTCT GCTTTCCTTC TCATCCGTCC TGCAAGTCCT CATGCCCTGG 000320 000321 CCTCTTTTTT CCCTAAATTC AGCCTTCTGG TGACACTTCA TGTTTGTCTC TTGTAAACAA CAAAGCTGGA TTTCACTTTT 000400 000401 TTTTTCTTTT ATTCAATCAA AAGTCGGTGC AAAACATGCC AGGGTCATCA CATCTGAAAG CCAAGGGAGT GGTGTGTAGA 000480 000481 TACCCATTGG TAATGAGTAG AGGGCTGCCC TGGGTGGAGG TGGCGGGTAA TTCCCAGCAC TTCCAGATGA CCACACATGT 000560 000561 GGGCAAAGTG GCCTTCCACA CTTAGGATGG GGAAACCTTC AGGTACAGAT GCAGGCCCTG GCAGGTGTAC TTCACCTGAG 000640 000641 CACAGTGAAA AGTGCAAGCA CGATTTGTTG AGCACTGGCA GCCTCCAGCA CACAGCTGTC CTCTAAACTC AGTGCAGACA 000720 000721 GTCCTCCCTG CCTCTAGAGG TCATGCCTCC ATTTCCCCAG GAGGAGCTGT ATCCATGGGG ATGGATTTCT CTCTCAGGAG 000800 000801 TTTTCTGCTG GCTTTTATCA CTTTATTCCT TGCATGATAG GTCAGTGGCT ACATGACTTG TGTCTTCCTG AGAGACTGTA 000880 000881 AGGCACTCAA GAGCAACGGG TACATCTGTA TTGTGCCTTG CTCACAGTCA AGCCTCAAAA GATTTTTTAA ATACAAGACC 000960 000961 CCGGATATGT TATTTTATAC CACATATGTT ATTAAAGCAA TGAAGAGGAA AAAAATCACT GACCTTTTAC TATGTACCAA 001040 001041 ATGGGAAAAT AGTATTTGCT ATTGAGAAAT AGGTAGTATT AATATCTCCA TTTTATAGTT AAGGAAATTG AGGCAGAGAG 001120 001121 AAGATGAGTG GTGAATTAGA TGAATGAAAT CTTACACTCT CACTCTTAAT CACTAGGCTT CCCTGCCTCC CATTAGACAT 001200 001201 GAATAGGAAC TGCAATTGAA AAAGTGTCAA CCAGCAAAGA GTGGGGAGAT GAGTGGGCCT CTCAGCCAGT TTCAGATAGG 001280 001281 AAAAGCAGAG TGTTAAGCAA TATGGGTATT TTTAATAATA TGTTCAAACA AACTTACTTG GGCTTGTGTA TGTACCCCCC 001360 001361 AAACACACAC ACACACACAC ACACACACAC ACGCACACAC ACACTGGGGT AGAACTACTC AAAAGCCCTC TGATCAGAAA 001440 001441 GATTGTGCAT CCTGAGACCT GCCTTGCCTG CTCTGAGGGC AGATCCCAGG GAACGCACCC TCACAGTCCC CCCACGTGGC 001520 001521 TATCCCCAGT CTGCCTTGGT GAGAGCAATG TGTTTGAATG CAGTAGGAGA GGAAGGGAAG TGGGAATGTG CAAATCGCCC 001600 001601 CATGGTCCCG ACCTGCTCAG AGGCTACTTC CCAACTGGAA CTCTTGCACA CGGTAATAGA AATGTAAACG GTATAACTTC 001680 001681 TTTAAAAACA GATGGTTTCT TTCTTAGAAA GTTAAACATA CACTTAACGT ACAACCTGAC AATTCTGCTC TTAGATATTT 001760 001761 ATTTAAGGGA ATGAAGCCAT GATCTACATT GTCTTGGCCA TAGATATTCA CAAGGTTTAT TTATACAGCT TCGATCTGGA 001840 001841 AAGAACCCAG ACATTCATCA TTAGGTAGCT GGGTGAAGAC TGTGGGTCAT GCACAC |
Predicted Small Protein
Name | NONHSAT079033_smProtein_122:352 |
Length | 77 |
Molecular weight | 8737.5022 |
Aromaticity | 0.171052631579 |
Instability index | 53.1131578947 |
Isoelectric point | 10.7232055664 |
Runs | 13 |
Runs residual | 0.0296430732002 |
Runs probability | 0.0659030070795 |
Amino acid sequence | MKFVRWKKIIGTSTFFLQGLAFPKTLYHKCFTSLLKSLPPVPRVFVGVSRPCLLSFSSVL QVLMPWPLFSLNSAFW |
Secondary structure | LLEEEEEEEEELLHHHHHLLLLLLLHHHHHHHHHHHHLLLLLEEEEEELLLLEEEELHHH HHLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTT TTTooooooooooooo |