NONHSAT079037
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079037 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1856 nt |
Genomic location |
chr20+:23128723..23130576 |
Exon number |
1 |
Exons |
23128723..23130576 |
Genome context |
|
Sequence |
000001 AAGTTGCCAC AGCCCTCACT CAGGGCTTCA TGCACGCCAG GGCAGTCCTG GGTCAATGGT CTCTTTCCCC TCCTCCTGTT 000080
000081 GGATAGATGA AGAGGCCTGA GCAGGAAGGT GGTGGTTCCG TGGGGAATCT TCAGTGACTG GAGTATGTTG TAAGGATGGT 000160 000161 GAATCGTCAC TTGGCCAGCC AGGGTTTGGC AGTCAAGACA GAGAGCAGTG TCTGGGCCCA CAGCATGAGA GACTGCTGGA 000240 000241 CTTCAGTCTT CGGAGCAGGC AAGAACGGGG AGCTTCTGTG GATTTCTATT CCTGTCGCCT GTCACTGTGA ACAGTTCCCA 000320 000321 GTACTGCTGG TCAGTAAATG TTTGCTAAAA TACTGAGCAA CCAAGGAAGT GACTTCAGTT GAACTCTGTA CCTGTTGTGT 000400 000401 TCACTTCCTT TGCAACATGC GTGACTAATG GTTACTCCTT CTCTTGAATG CTTCCAGAAG AGTAGCACTC ACCACCTCAT 000480 000481 GAGGAAAGGC ACTGCAACTT TGGTCAATGA TATCTGTTAG AAAGATCTTT TCCTATATTT AGAAGAGTGA TTCTCATACC 000560 000561 TGAGCATGTA TGAGAATCAG TGGGTTTGAG GTGGGCCCAA GAATTTCCCT TTCTAACAAG TTCCCGGAAG ATGCTGATGT 000640 000641 GGCAGCTTCT AGCACAGTGC TTGGAAATCC ATGAGTTTTC AAGAGGACAA TCTAAAGTGT TCCTTTGTTT TCCTTTACTT 000720 000721 CCCCTCATTC TCAAATCCTA TGGGGATGAC ACAGAGAACC ACAAACAAAA CAACACACAC ACACACACAC ACACACACAC 000800 000801 ACATACACAC ACAGAGCACC CTTGTCCCTA GCTTTATCCT CTGGGATACA CAGGACAAGC TCCTCCCTGT TCTATGTGCA 000880 000881 ACTTTTAAAA TATGTGCAAC TTTTAAAATA CGTGGATGTG GCTTTCACAT CTTCTTAGTC CCTCTTTAGC AGATTTTTTA 000960 000961 CAAAACAAAT AAGCCAGGAA ACCATGGTCT GAAAGGATTC CTGCTCTGGT GAGATCCAAG ACCCACAGCG AGGGCGAAGA 001040 001041 CAGAGGTCTT GCTGCAGCCC CGGCTTCCTC CACATGGAGG TCCCAGGAAG ACGGCATAAG CCATTGCCTC GATAATAACC 001120 001121 TGCTTGCTAA CTTCCAGCCA GTGCTTCCAC ATTTTCATGA CTTCCAAAGG TTCAGATGAG GATGGTAGTT GTGAGTTTGG 001200 001201 GATGAAGTCT TCTGAGCGAC TCCTATGGCC CAGCCACAGG GACCTGGGGC TGGAGAGAGA GGACCATCCC AGGCTGCAGC 001280 001281 AGCCAACACC TGTGTGGAGG TGCAGGCCCG TGGCCCCCAG CTGTGGTGGA CACAGCTGTG CTTCCTGATA GCACCCTTCC 001360 001361 CTGCACCTAC ACCGTGACAT CCTCCTCCTC AGCCTGAGTG CAGGCACCAC CTGAAAGGTA TTTGGGGGAG GGCACCAGTG 001440 001441 TCCCCAAGGT AGGAGCTAGT GCATATGGCC TCGTCCTTCA GAGGGACAAT TCTGAGAGGC AATCTGCATG CTTTCAAAGG 001520 001521 CCCAGAAACA CACCCTGTGT TGCCTCCTCC CTGTCTGACT CTTCCTCTTC CTCCTGCTCC CTGGGACCAG CTCCCAAACA 001600 001601 AACTCAATTT CTTCTCTCAG TCGAAGTTTG CTAAGTGAGT GAAGAGTCAA ATAAATGATG TTGCTTAACT CTCCCTCTGA 001680 001681 TGTGTGAATG TCCTCTAGGA ACAAGCCTTT TGTAGGAGAA CTGTAGGCCA GGGCTGAGTG CACCTGGGAT GCAGGATCTC 001760 001761 CAGGGGGGAC CTATCACTTG TGCGAATTTA AACCTGCTCA GAGCTTAGGG CCCGGCTCTG CTCAAGATGG GCAGAAATAA 001840 001841 AGAAGACTAA ACATTT |
Predicted Small Protein
Name | NONHSAT079037_smProtein_155:355 |
Length | 67 |
Molecular weight | 7347.5679 |
Aromaticity | 0.0909090909091 |
Instability index | 41.5257575758 |
Isoelectric point | 8.46380615234 |
Runs | 12 |
Runs residual | 0.0312103066594 |
Runs probability | 0.0580948595654 |
Amino acid sequence | MVNRHLASQGLAVKTESSVWAHSMRDCWTSVFGAGKNGELLWISIPVACHCEQFPVLLVS KCLLKY |
Secondary structure | LLLHHHHLLLLEEELLLLHHHHHHHHHHHHHLLLLLLLEEEEEEELLLLLLLLLEEEEEE HHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHL LLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTi iiiiii |