NONHSAT079037

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT079037

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1856 nt

Genomic location

chr20+:23128723..23130576

Exon number

1

Exons

23128723..23130576

Genome context

Sequence
000001 AAGTTGCCAC AGCCCTCACT CAGGGCTTCA TGCACGCCAG GGCAGTCCTG GGTCAATGGT CTCTTTCCCC TCCTCCTGTT 000080
000081 GGATAGATGA AGAGGCCTGA GCAGGAAGGT GGTGGTTCCG TGGGGAATCT TCAGTGACTG GAGTATGTTG TAAGGATGGT 000160
000161 GAATCGTCAC TTGGCCAGCC AGGGTTTGGC AGTCAAGACA GAGAGCAGTG TCTGGGCCCA CAGCATGAGA GACTGCTGGA 000240
000241 CTTCAGTCTT CGGAGCAGGC AAGAACGGGG AGCTTCTGTG GATTTCTATT CCTGTCGCCT GTCACTGTGA ACAGTTCCCA 000320
000321 GTACTGCTGG TCAGTAAATG TTTGCTAAAA TACTGAGCAA CCAAGGAAGT GACTTCAGTT GAACTCTGTA CCTGTTGTGT 000400
000401 TCACTTCCTT TGCAACATGC GTGACTAATG GTTACTCCTT CTCTTGAATG CTTCCAGAAG AGTAGCACTC ACCACCTCAT 000480
000481 GAGGAAAGGC ACTGCAACTT TGGTCAATGA TATCTGTTAG AAAGATCTTT TCCTATATTT AGAAGAGTGA TTCTCATACC 000560
000561 TGAGCATGTA TGAGAATCAG TGGGTTTGAG GTGGGCCCAA GAATTTCCCT TTCTAACAAG TTCCCGGAAG ATGCTGATGT 000640
000641 GGCAGCTTCT AGCACAGTGC TTGGAAATCC ATGAGTTTTC AAGAGGACAA TCTAAAGTGT TCCTTTGTTT TCCTTTACTT 000720
000721 CCCCTCATTC TCAAATCCTA TGGGGATGAC ACAGAGAACC ACAAACAAAA CAACACACAC ACACACACAC ACACACACAC 000800
000801 ACATACACAC ACAGAGCACC CTTGTCCCTA GCTTTATCCT CTGGGATACA CAGGACAAGC TCCTCCCTGT TCTATGTGCA 000880
000881 ACTTTTAAAA TATGTGCAAC TTTTAAAATA CGTGGATGTG GCTTTCACAT CTTCTTAGTC CCTCTTTAGC AGATTTTTTA 000960
000961 CAAAACAAAT AAGCCAGGAA ACCATGGTCT GAAAGGATTC CTGCTCTGGT GAGATCCAAG ACCCACAGCG AGGGCGAAGA 001040
001041 CAGAGGTCTT GCTGCAGCCC CGGCTTCCTC CACATGGAGG TCCCAGGAAG ACGGCATAAG CCATTGCCTC GATAATAACC 001120
001121 TGCTTGCTAA CTTCCAGCCA GTGCTTCCAC ATTTTCATGA CTTCCAAAGG TTCAGATGAG GATGGTAGTT GTGAGTTTGG 001200
001201 GATGAAGTCT TCTGAGCGAC TCCTATGGCC CAGCCACAGG GACCTGGGGC TGGAGAGAGA GGACCATCCC AGGCTGCAGC 001280
001281 AGCCAACACC TGTGTGGAGG TGCAGGCCCG TGGCCCCCAG CTGTGGTGGA CACAGCTGTG CTTCCTGATA GCACCCTTCC 001360
001361 CTGCACCTAC ACCGTGACAT CCTCCTCCTC AGCCTGAGTG CAGGCACCAC CTGAAAGGTA TTTGGGGGAG GGCACCAGTG 001440
001441 TCCCCAAGGT AGGAGCTAGT GCATATGGCC TCGTCCTTCA GAGGGACAAT TCTGAGAGGC AATCTGCATG CTTTCAAAGG 001520
001521 CCCAGAAACA CACCCTGTGT TGCCTCCTCC CTGTCTGACT CTTCCTCTTC CTCCTGCTCC CTGGGACCAG CTCCCAAACA 001600
001601 AACTCAATTT CTTCTCTCAG TCGAAGTTTG CTAAGTGAGT GAAGAGTCAA ATAAATGATG TTGCTTAACT CTCCCTCTGA 001680
001681 TGTGTGAATG TCCTCTAGGA ACAAGCCTTT TGTAGGAGAA CTGTAGGCCA GGGCTGAGTG CACCTGGGAT GCAGGATCTC 001760
001761 CAGGGGGGAC CTATCACTTG TGCGAATTTA AACCTGCTCA GAGCTTAGGG CCCGGCTCTG CTCAAGATGG GCAGAAATAA 001840
001841 AGAAGACTAA ACATTT
[back to top]

Predicted Small Protein

Name NONHSAT079037_smProtein_155:355
Length 67
Molecular weight 7347.5679
Aromaticity 0.0909090909091
Instability index 41.5257575758
Isoelectric point 8.46380615234
Runs 12
Runs residual 0.0312103066594
Runs probability 0.0580948595654
Amino acid sequence MVNRHLASQGLAVKTESSVWAHSMRDCWTSVFGAGKNGELLWISIPVACHCEQFPVLLVS
KCLLKY
Secondary structure LLLHHHHLLLLEEELLLLHHHHHHHHHHHHHLLLLLLLEEEEEEELLLLLLLLLEEEEEE
HHHLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHL
LLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTi
iiiiii