NONHSAT079374
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079374 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3016 nt |
Genomic location |
chr20+:31442380..31446532 |
Exon number |
3 |
Exons |
31442380..31443387,31443441..31443682,31444767..31446532 |
Genome context |
|
Sequence |
000001 TGCCTGTAAT CCCAGCACTT TGGGAGGCCA GTGCAGAAGG ATTGCTTGAG CCCAGGAGTT TGAAACTAGC CTGGGCAACA 000080
000081 TAGCAAGAGA CCCTGTCTCT ATTTAAAAGA TTTTATATAT ATATATGATC ATATATAATA TATATAAGAT ATATATGATC 000160 000161 ATATATATAA TATATATATA TATGATCATA TATATCTTAT ATATATATAT GCAGTTTGGA ATTCTATTTG TCTTGCCTTA 000240 000241 TTTGCTTTTT AAAAATTTCT ACCTTAGTTT TTTCCTGGTT TACTTTGAGT GTTTTTTTGT AGTCGGAGGA GATTGTTGGT 000320 000321 GCGGCTGGGT GTAGGTATGA GGCAGAGGAG GAAGAGTAAT TTATTCCATC TACTGAGCCT TTCATTTACT TTCTGTTTTA 000400 000401 GCAGTAGAGT GGGATGTCGG AAGCTTTTGT TGGGTGAGAG TCAATCTGTC AGGGTAAATC TTAAAAAGCT GGATTTGTGG 000480 000481 TTTAGTTACT AGTTACTGTG TCTCCAGTGG AGACAAAGAT TAGTTTTTAA GATTTAGCCT TAATGGATGA TTCACAAATT 000560 000561 GCAATGCAGA GTATTGAAGT TAAGTCCAAG GTCAAGCACA CAAGTGGGTA AAACTGAACA TATGAAATGG GTGTGTGGCT 000640 000641 GGCACCCACC TCTGACCTTT ACTGAAATAA ATGAGGAAGA CGGTGCTGTA AGTGGAATGC CACGGACCAG GAGTTAAGAC 000720 000721 CAGAGTCCTC TGCTAGGCCC TGCATCTGAA GTCTGCAGAG CATGGCTTTT CATTGGCTCA GTGAGGAGTT GAGTCCTGGT 000800 000801 TCAGAAAAAG TTACCGAGGT CTGTAAAAGT CAGTAGGATA CCGGAACAAG AAAGAGTGGG AGAGTGTACA GTTCCCAGCG 000880 000881 AACATTGCCA GTGGAGGCTA ATTTTCACCA GTGAAGGGCG ATTTTGATAG AAAAGCACAG TGTCTCAACT ACTTGTGGTT 000960 000961 TTTGATTCTG AAAGAGGAGG CTTTGGCAGG AGCAATAATA CACGTGGCGC TAATTCTAGT ACCTCCATCC CCGAATCGTC 001040 001041 TAAATGTATT TTACCCAGGA CCTGTCATGG TTTATCTGAG TGACCAGTTT CCTTTCCTCT CTTGCTTATT TATCATGTTC 001120 001121 ATATTTATAT TTTTCATAAT GGGGCCTATT TATATATTTT GAAGTAGTTC TAGTGATTTT AAGATCCAGC AAAACTTCAA 001200 001201 GGTCATCTGG ATTTTGGTGT TCTATTTAAG TTTTCTAACT TGATACAGTC CGTGAACCAC TGCACCCGGC CTGAATCATG 001280 001281 GTTTTTTGAA ACCATTGGCA TCTGAACCTG TAGCTCTCTC TGGTAGTGTT GTGTGGTTTT AAATGTCATG TGAGCTGAGT 001360 001361 TACTGACCTC AACCTACTGC CAGATGAAGG TGTGATCCTG TGATACCAAT CTTGAGGGTC CCTTCTAGTT TTAGCAGTCA 001440 001441 GTGACTTCTC TTGTTTATTT TTGTTTGAAA AAGTAAAAGG CTCTCTTTTT GGCTATAGAG TTGCATCTTG AAATTTTTGA 001520 001521 CAAATTACAT AGAGCTGAAG AAGGATACAA GTTTTGATAT CTTAAAATCA CAGGGTTGAA GCTTGAAAGG ACAGTATTGG 001600 001601 CATTGCAGCT AAGTGGGAGT GTGAGGAAGC GCCTTCTCTA GGGCAGGTAA TTGCATCTGT TAATGTGGTC CTTGGGCCCC 001680 001681 TGAGTTGCTG CCTTCCAATC AGAATTCCCT TAGCATTAGC CAGTGACGCC TGAATTAATC TCAGGTAGGA CTTCTAACTT 001760 001761 TTTTCCAAAA TTATTTTTGT GCAGAGGTTT ATCTAGATTT TTCTTCTAAA TGTCCTCCTC CCCACTTGTT TTATTATTAC 001840 001841 TGTTTTTTTC TCTCTTTAAT TTTTTTTTTT TTTTAATAGA GACATGGTCT CACTATGTTG CCTGGGCTGA TCTCAGACTC 001920 001921 CTGGGCTCAA GTGATCCTCC TGCCTCAGCT TCCCAAAGTG CTGGGATTAT AGGCGTGAGC CATTGCGCCT GGCTCTGTTA 002000 002001 CTGTTTTTCT AACCTGAGTT ACTTAGGATC ATATTTTCAT TCTTTTTTAA AAAGATGGGA GTTTTCTGAA CTTTTCCTTA 002080 002081 ACTAAAAAGT GGAATGCATC TTAATATTTT CCTTTTTTTA CTTGTGTTTC TCCCCAGGGA GGGAAAAACA TATTTATTGT 002160 002161 GACAGAATTT AGCATATTTT AGGCCACATT AAAATACTGA TAAATGTATT AATCAGTGAA AATAGGTTAT AGTGAAAAAT 002240 002241 ATATACCATT TGATTAATAA AAATGTTATT GGAAAAATGC AAGAACTGCT GTAAGAATTG CTAACATTGT GTTGGAAAAT 002320 002321 AAATATACTA AGCTAAGAAA CAATGGGAAA CTGTCATATG TAGGGCCAAC AGCCTTTTTT TTTTTAAACC CTTCCAATTT 002400 002401 ATTAATATCT AGTCTAATAA ACCCTGATTT ATAGGACCTC TGCACCTTTT TTGACTTTTT ATTCATCCAT TCTTAATATT 002480 002481 CTACACTATG ACAAAATCCT TAAAACTCCA TTATTGATGA AATGGGAACA GACTTTTGTT TTTGTATGTT GGTGTTCTCT 002560 002561 GAGTGGTGAA GGCCCAGGGA GAATGTTTTG TTTGGTGGTC ACTTAGCATT TGAAAACATC CACTTCCTTG TGACTTAGCT 002640 002641 GGGTATCTTT TAACATCTGG AAGCCACGTC CCTGATTGAA ATCTCTGGAG ACAACTTACC TTTCACCAAC TTGTCTGCCA 002720 002721 AATTGCACCA TGGACCAAGA TTGCAGTGGC TGCATCAAGT CTAGGCCTGC CCTGAAGTCT GGATTTGTAA GTCCCCCATT 002800 002801 TCAAATGGGG CAGAAGGCAG AGGAGCAGAG GAGCCACTGT GCCTTTCGCT GTCCTGGAGC CAGTTGGCCT TCTGGTTTTG 002880 002881 GTGAACCCTG CTTTTATAAG AGGACTCCCT GGCATCTTCC AGTTTCCCGC TACTTGTTTT ATGTATTATT TTATGTCTGT 002960 002961 GTTTGTCCTG GAGTGCTGTA ACTCCTTTCA CTGTCTGCTG TAAGTTCAAC TTCTTC |
Predicted Small Protein
Name | NONHSAT079374_smProtein_2729:2980 |
Length | 84 |
Molecular weight | 9384.8281 |
Aromaticity | 0.156626506024 |
Instability index | 68.396746988 |
Isoelectric point | 8.76544189453 |
Runs | 7 |
Runs residual | 0.0556894243641 |
Runs probability | 0.0538143185203 |
Amino acid sequence | MDQDCSGCIKSRPALKSGFVSPPFQMGQKAEEQRSHCAFRCPGASWPSGFGEPCFYKRTP WHLPVSRYLFYVLFYVCVCPGVL |
Secondary structure | LLLLLLLLLLLLHHHHLLLLLLLLLLLLHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLEEEEEEEEEEEEEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLHHHHHHHHHHHHHHHHHHLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiTTTTTTTTTTTTTTTTTTooo |