NONHSAT079595
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079595 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
5393 nt |
Genomic location |
chr20+:35405846..35415173 |
Exon number |
2 |
Exons |
35405846..35408377,35412313..35415173 |
Genome context |
|
Sequence |
000001 GCTGTTCATA TGACATACTT TATTTCCAAT CTACAACCAT TAAAAACGCT TTATAAGTTT ACACTGTACA GTTATTCTCA 000080
000081 TGTCTGAAAT AAGACACAGG GGCAGGGAGA GCTGGTGGAT TGGACTGCAG TTGTCCTAGC ACCCGATCCA TCCTAGGAAG 000160 000161 GAGCCTTTTG AAGACAGAAG TGGAAAGGAG AGAATAGTGG ACAAGAGAGG TGGACAGTTG GCCCAAGGAT GCCCTTGGTC 000240 000241 CCTTCCCTCC CATGGGCCTT GCCCTGGGGG TCCCCCAGGG CCCATGACTG CAGGACCCTC ACCAGGAAAC CAGGCTGAGT 000320 000321 GGGAAGGGGG TTCACAGTAT TGGCGGGGGC TGGGGAGGGG CCAGGATGAG GAGGAAGGGC AGCTTCTGGC TCTCTTCCCA 000400 000401 GCTGCTGGGG GTTGGAGCTG TTTTTTGGCA CTGTCTACAA GGTATCCCTG GGGTTGGGAG GAGGAGGAAC TGGGGATTTA 000480 000481 GGATGCTTTC TTTGTGGAGT TAAGATTTCT TTCAGTTTGA AGAGGCGCTA TCTGGCCTAT GGTGAGGTTC CCAAGGGAGA 000560 000561 AACAGTCAGG GTCTTCTGCC TCCTGCCTCC CCAGGACTCC CACCCCCTCC CTGGCTGGCA CCATCCACAC AGCCTTTTGT 000640 000641 AAAACCAAGA CAAGTGAGAG AGGTGAGCAG GAGCAGGGAA ACAAACAATG TGTGCTTTCT CCAGGCCCTT CAACTTCTCT 000720 000721 TCCTCTTCCA AGAGGAGCGA CTATAGGGTT GGTTTTTGTT GGTGGTGGTT CCCAATCTCA GGAGTCCAGA TAAGGCTGGT 000800 000801 GTTTTCCACC TGTTCTTGGC CTAGCCAGTC CCAGTCCCTC CCCAGGCTCT ACTAATGGCT AGCCCAGATC AGCAGTTGGC 000880 000881 ATATTCTTAt gcgtcagaat catttggagg gctccttaaa accccagctt gtagggcccc actccacaag ctctaattca 000960 000961 gtgggtcttg ggtggggctg ctaatctgca cttctatcaa gttcccaggt gatattcctg ctgctggaat gcaatacaag 001040 001041 aaccactgGC TGAGAATGGT GCCCGCAGTC ACCTCATTCT GAGCAGCCTG GTGTCTCCTG GGCAGCACTA AGGAGCTGGG 001120 001121 CCACAGCTGG CAAAGCCCAG CCTTGGGGCA CCACATCACC TGGGAAGCTG CTGGAAATGG TCTTGGGGTG AGTCCCCCGT 001200 001201 GCAGAGAAGT AAACTAAGGC ACAGAGATCA GTGGCAGAGC TGAGAGAGGA GCCAGGATAC CAGGGCCCAG TAGAGAAAGG 001280 001281 ATGGGGCTGC AGGACCCTAC AGCATGAGGG GTGCTCTAGG GACCACAGGG CCATCCTGGT GCTCATCACA GGATCACAAG 001360 001361 ACTGGGAAGG TAGGAGAAGT GAAGACATCT GCCCAGACCT GGGCCAGGTT TCCAGATTGC CAGCTGAGGT CCCTCTTCTT 001440 001441 GGGAATGGTT TGAGTGGCTT CCAAATAAAG AGTGACAAGG CAGCCAGCCC TGACTGCCTC AGCCCTTCAA AGATGTTTAG 001520 001521 AGAAAACCAA AGGTCCCTTC CTCAGGGCAT GGTGTCCAGA AAGCTGGTGA AGGGCAGGAA GGGAGGGGAG CAGGGCCGTT 001600 001601 GGGATAGACA AGCAGCAGAG GAGGCTCCAA GGAGGGTGAG GAAGGAGTGG CAGGGCTGGC ATTGGAGAGA AGCCCTGAGC 001680 001681 AGGAGACTTG GGCCCAGCAT CATGTCCTCA GTCCCCTCAG GACTTGGGTC TGTATATTTT GCAAACTGCA AATGCTGTTG 001760 001761 GGTTGGGAGG GGTAAGGCAT AGAGTTGGGG TGAACTGTAG ATTCTGCCAG GACAAGCAGC TCTGAGAGTG GTGAGGTCCA 001840 001841 GAGGAGAATG GAGAGGATGG TTGGATACTG AATGGACAAA GAGATGGATC AATGACCAGA GACAGGGAGA GAAGAACCTG 001920 001921 TCAGGCAGCA CCTGCTTTAC AGTCAAGGCC ATCTGGGCCT GGGCAGGGCA GGGGAGGAAA AAGGAGGGAT CCAAGCCCCC 002000 002001 CCCACCCACC ACCACACACA CGCCCATTGC AAAGTGCTGG GGCTGCTGCT GGCAGGCTGC TTACAGAGAA GACAGTGTGG 002080 002081 CTTAAGGGTG GCACCGGGGG GTTGCTGGGG CAGGGTGAGC CCAGTGAGAA GGGCTGGCAG GGCTGGTGCC TCCTGATGCA 002160 002161 TTGGAGGAAG AGGCTTTTTT TTGTGTGTGT GAGAAAACAC AAAATAAATA AACACAGAAC CAGGACACCA CCACATTTGA 002240 002241 GAGCAAATAT CAGAGTTGGG AAACCACAGA CGCGGACAGG AAGGCTTCCC TGGTAGGAAG CAGGGGGACA AGAAGCCAGT 002320 002321 TACTGAGGTT ACGGGAAAAT CCGCACGAGG CAGCAGTGCT GGGAAGAACA TCCTGGGAGG ACTGAGGGCT GAATACTATA 002400 002401 GTGAGCTCCG GACCCAGAAG AGGAAAACCT GGCATGGACC AGGGCCACTC CATTTGCTGG CAGGAACCAG CCAAGGAGAA 002480 002481 GAGGAGGCAG GAGGACAAGA GGCTTTGGAG GGAGATGATA AAGAAAGAAT GGCCCCACGT CCAGAGGCTT CTGCAGGAAC 002560 002561 AGTGATGAGT GGCCTTGCAC AGTGGCATGC AGGAAGTAGA AACTGGGGCT TTACTGAAAA CCAAGGTCTG GCTGAGACAA 002640 002641 CAAAGATGGC AAGGACAATC CTGGACGGTA CGATGGTAAG GCTGAGTGGT CCGTAGGTCT TGGGGCTCAG GTCCCACGGG 002720 002721 GATTTCTCCC CGAGGCTGAG TACGCAGCCT CCCTGGCTGT CGCTCTGGGA GGTGGCAGAA GGCCTCTGGT GGCTTGTGGC 002800 002801 CTGATGTGAA TCCCCTCACC TGGAGATAAC CTTGGAGGGC CCCCCTGACC TCATGGGTGA GAGCAGCAGC ATCCAAGAGC 002880 002881 GGAACTGGCC CACAGCTCCA CTGGCTGCCT GCTCTGCCCA CACCAGTCAC TGGGGCATGG AGGAGGCGGC TGGCGGGACT 002960 002961 GGCATGACCC TGGTGTTCAG CCTGCAGGGA AGGGAGATGC AGGACTTGGG GTAACTGGTC CAGGTGATCC CGAATGGGTG 003040 003041 GGTCTGGGAA CTGGCAGGTG GGAGGTGGGA GTGCAGGGGC GCCTCCAGAG TCCTGGGGGC AGATCAGCAA AGCTACTGGC 003120 003121 TTTTGGTCTT CCTGATGGGC AATTCTGCAG ACAAGCTGAT CCATCCTGGT GTTTCCACTC TGGGTCCCCA GTCAGTTACA 003200 003201 GGAAGGCTGA TGTCTATGTG TGTGTGGGGA GCATGTGTGC AACCAAAAGG GGTTCACCGG CACCAAGGCG AGGCCATGGG 003280 003281 AGGCGCTGCC CCACATGCTG CAATGAGCCA CATCGAAATC CAACCAATGG CTCAGGCAGC TCACAGGGGA CGTGAGGAAG 003360 003361 GGCGGGCAGC AGAGCTGGGG CAGGGAGAAG AGCCGTGAAA GGCCATAAGG CTAAGGAGAG AGGCTGGTGA AAAGGCTGGC 003440 003441 AGGCTGGTGA GAACCGAGGC AGGCTGGGAG ACACTCAGGT TTATGTGCAA AGCTGCGATA AACAACATTC TCAAAGTTCA 003520 003521 GTCCTGTTTT CCTGTGAGTT CTCATTTGGG AAACTTGGAG GGATCTCCAC ACTCTTAATA GAGCTTTAGT AATCCACGTT 003600 003601 CGACTCATGA AGAAAGGTGT CAGAGGGAGG GAGGGAAATG AGACAGGCAA TGGAGAACGT CTGGGGAGTG GTGATGGCCG 003680 003681 TCCAGCCCTC CACCTTGTCA GTGAGTATTT ATAGACTGAC CGCTGGGGCT GGCCAAGTAC CAGGCATTGA GTAATAAGTA 003760 003761 GTGTTCTGAG GCCACATGGC CAGCCGTGTT GGGGTGCAGG GCTCCAGCTC TGTTGAGGGG CCCTCCAAAG CTGACCAGGA 003840 003841 GGCCAGGTCT CCAAACCTGG CTGCCAAGCG GCCTCGTCCA CCCAGGGGAC CCCATGCCTG CCCGTGCTGT TAGAGGCCTC 003920 003921 ATGTTGTCCC AGTGGCAAGA ATGCATGTTT CAACCTCCAA TAAATTACCT TAGGGACTTT GGGGtaaatt aaattattaa 004000 004001 aataaaGTAA ACCACCTTAA ATATTTATAG TAGGAAAAAT TCAAATAAAC AATCTAGGCA AGATACGTGT TTCCAGGCCC 004080 004081 CAGTCTACTG CTGTGTCCTG GGCTCTGGCC TCTTGGTGTT CTCCTGGGCC TGACCTGGCC AACCAAGAAT CTCTTACTGG 004160 004161 GAATATCTTT GCCCCCCGAC CAGCTGCAGG ATGTAAACAC AGTGGAGATG TAGTGCCTGC TGCCTCTCAG GGTGCCAGGG 004240 004241 AAAGAGGCCT CTGAGATCAC TTGAGATCAA GGCAGTGTAT TTAGGCATTT ATCTATGCAC CAGGTCTTGA GACTGACTCT 004320 004321 ACCTATTTCT GTCCTCAAGG GGTCTGCTGG GAACGTTGGG GCCCCAAGTC ACTTTGGCAA GGAAGGCAAT TGCAATCACT 004400 004401 CCCCAACCCT GAGCCCTGCA TGTTTCCACT TCGCCTCCCA GCTCTTGCTG CATCCAGGCT ATGGGCAGGG AGATCCAGGG 004480 004481 CTCCAGGACA CTAAGCAATG GCCCTGGCTA CTGCCCTATC ATACTCCCTA GTGTCCCAGC AATCTAGAGC AGTGGGGCTG 004560 004561 GGAGGAGGAG GTGGTGGAGA GAAGGAGGTG ATGGTGATGA TGCCCAACAG GGCTCCACCA GGAACCAAAC ATGGAGCCCT 004640 004641 AGAGCAAAGC CTGTTCTTCT CAGCAGTGTC TCCTCCCAAA TGAAGGGGTG GATGGTCAGC AGGAAACATC TCTCCGACTC 004720 004721 CTTTTCCCCA AAGGCATGGC CAGACATGTA TCCTTCTTGG GCTCTTCCAA GAGGGTGGCA TGGGCAGAAC CAGGCAAGGC 004800 004801 TCTCTCTTAG GACCCAGGGA TCGGCTCTTG ACAGATCTCT CAGTGGATGC TTGGGAAGCC CAGGTTTGGT CTCTCTCCCA 004880 004881 CTCACTGCCT TCCCCTGGGA AGTCGAAGCT CACCACCCAG GGGCCAGCAG GAGACCCGGC TTTACCTTGA TGTGAAAGCT 004960 004961 GCATTCTGGC AGTGGCATCA CTGCTGTCCC TCCAGGGCCA GGCAATGCTG AGGACACAGC CCCTCGCCTC ACCTCGTCTC 005040 005041 GTCTCTGCTG GTTCCCTTCT GCTATCCAGG GGCTGGGCTG GTTGAGGCGG GGAGCTTGGC TGCTCTGTCA CTCGCTGGGG 005120 005121 GGGAGTGCCC TCTCCTCCCC ACCCCAGCTG GACTCTGAAG GGTGCAGCCT GCACTTGGAA GGAGAGTGGC GGATGGCAGA 005200 005201 GCGGGACGAT CGGGCGAAGC AGGAGGTGAG AGACTGGGTA CTACAGTCAC AAACAGCGTC CTAGGAAGAG GGAGGCAGGG 005280 005281 AGGCAGGAAG TCAAGAGGAG CCAGGAGACA TGGACCACCA TGAGCTGTGT GGTATGCCAG GCAAGGAACT GAGACTCGGC 005360 005361 CATAAACCAG TTCCCAGGGG CTGAAGCTCC TCA |
Predicted Small Protein
Name | NONHSAT079595_smProtein_4679:4954 |
Length | 92 |
Molecular weight | 10085.4504 |
Aromaticity | 0.0989010989011 |
Instability index | 52.410989011 |
Isoelectric point | 10.4026489258 |
Runs | 12 |
Runs residual | 0.00160256410256 |
Runs probability | 0.0372578460814 |
Amino acid sequence | MKGWMVSRKHLSDSFSPKAWPDMYPSWALPRGWHGQNQARLSLRTQGSALDRSLSGCLGS PGLVSLPLTAFPWEVEAHHPGASRRPGFTLM |
Secondary structure | LLEEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHEELLLLLHHHLLLLLLLLL LLEEELLLLLLLLEEELLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |