NONHSAT079643
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079643 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2349 nt |
Genomic location |
chr20-:36840874..36846585 |
Exon number |
3 |
Exons |
36840874..36842145,36845262..36845407,36845655..36846585 |
Genome context |
|
Sequence |
000001 GGCACTGCCA GGGCAAAGCT GTGGAGGTGG GAAAGAGCAA GAAAAGTTCC AGAGACAGTG AGGGAACCAG CTTGGATTGc 000080
000081 agagttcagc tgagatgtta tctcccccag agattcttac cagaTGGCCA AGCCCAAAGA ATATtctgaa tcccccagag 000160 000161 ggtttcttaa aatgcagttt ccagggcccc atccTAGACC TAATAACTCA GCCTCACAGA GCCGGGGGTT GGAGGGCAGG 000240 000241 GAAGCTGCAT CAACGTGATG CGAtgtgaca aggctctgga ccacagggtg attcagcccc gtatcagcgc tcaggaattc 000320 000321 tcaggccagt ggggagcggg ggcgggggcg gggacaaaca gggaagcgca cagtaaggga gaatgtgggg actcagagca 000400 000401 ggagcctttg gagtcagaga agttttccag aaggaacatc taagcagagc ccggctaggc aaagtgaact gccatggcga 000480 000481 gggcctggag aCTTCCAGAA GCGTGATAAC TGCTCTTAAt tgttcaaccc tcaccaggag ctaagccctg tgaggtgggt 000560 000561 gctattaggg tccccattct acagatgagg aaactgaagc tcaggaagtc tcctggctcg ccagcaaggc agctggaggt 000640 000641 tgctgaCCTC CGAGGGAGGC CCCAGCCAAG GTGGGTGCTG AGTGGGCGCC CCCTCCTCTC CCCTCTCAGG CCCAGTACCG 000720 000721 CCGAGGCCTG GAGCTGTCCA AGCAGGCCGC TCAGCTGGGA GCTACAGCCA GAGGGGCTGG GGAGGCAGAA CGTGCAGAGT 000800 000801 TCCCAGAGCT GGCAGCCTTT GCCTCTACCC AGCGGGCCTT CCAGGCTGAG CTGACCCACT TTTACATGGC GGCCGAGCGG 000880 000881 CAACGCACGG ACCTCGAGAC GCTGCTCCAC CTGCACCGCT TCTGCAAGAG GTCTTGTAAC AGGAAAAAAA CAGAGGAAGG 000960 000961 GGAAGAGCTG AGATTTGAAC ATAGATGTGT CTGTGGTACC CCGTGACATG CCTTATATGC TTCCCCAAAG AGAAGAGAAA 001040 001041 TGACGACAGA TCCCTTCACC AAGCAGGCTT GACCATGATG ACCTGGTTCC ACATGGACTG TCAGGACCTG ATGGCCCAGC 001120 001121 TCAGGCTGGA CAAGACCTCA AGGGTCAGTC CTGGGGACCA GCGCCGCCTC CACCGCTACC TGCAGCGACT GGCATCTGAG 001200 001201 TTCCCTGCTG AGAAGCTCGC AGCCGTGGGG CTGCAGGTGG CCTCCCTGAG CCGGGCAGGC CTGGGCCAGG AGCTATGGGA 001280 001281 GGAGGCCCGG ATCAGGCATG AGGAGATCCG GATGCTCCTG GAGAAGGCAC TGACCCACAG CTCTTGCCCA GAGGCTCCAG 001360 001361 CTGCTCACTC AGCGCGCCCA GAACGAAGAG GGGTGGCAGC CAAGGGCCAG GGTGTGAGTG TAGAGGTCAC TTCCAAGGGG 001440 001441 AGGTGGGATC AGCCTCCACT AGACTCACTG GGCATGGACC ATTTGCCAAA GTCCTATTGG CCTCCTGGGC CCCCCAGAGG 001520 001521 GGAACAGAAC AGAACTTTCC AGGCAGGCTC TCCACCCCAG GAAGCTGGCC AGGCTGCAGA GGCTGAAGAC GGCAAAGGCT 001600 001601 CCCACAAGCT GCCTGACCCT GCCCGCGAGC ATTTGCTTGC CACCACCTTC TTCCGGCAGC AGCCCCCCAG GCAGAGCCAG 001680 001681 GTCCCTCGCC TCACTGGGGG CAGCTTCTCC TCAGAGGGGA CAGACTCACA GACATCCCTT GAGGACTCAC CCCAGACAAG 001760 001761 TCCCCTTGCC TCCCTCTAGC TGAGAGGCCC CTTCAGTCGC ACCAGCCTCC AGGAGCACTG GGCCAGGGCC CAGCTGGAGG 001840 001841 GGTAGCTGGG AGCTCTGGTC AGTCCCAGTG AGACGTCACC ATGGAGCACT GGTTTTACAT TCTGCCTCTG CTGGGAGGAT 001920 001921 GAGAACTGTC GACCTGCCCC TGGCTCCAGA AAACTCCTGG AAGACCCGAT CTTCACCCAT GCAGAATAGC AAGAGTGGGC 002000 002001 GTCAGAACCA GGGCACAATA AATGGTGTGA TTGGCTCCAT CCCTCCAGGC TCTCATTGTG GAAAGACCTG TCGGCACAGA 002080 002081 CCCCTCCAGA GGTCTCGCTC GCAGGCAGGC AGACACCCAC CTGCAGCTCA GGAACATACA CAGCTCTCCC CTCGGGTACG 002160 002161 AGGGCCAGTG TTGCCCTTAG GCAGAATCCT CGGGGAGATT CGGGAGTGCT TCcttgtctt ggattccagg aaaatggacc 002240 002241 ctgagatgag gatttaagga tcagtgtgtt tggtgctgat ccaggaacct ctgctggggg agtaggaggc gaatctgcaa 002320 002321 agggaataaa gagtatgttg tcaagcaaa |
Predicted Small Protein
Name | NONHSAT079643_smProtein_584:853 |
Length | 90 |
Molecular weight | 9930.3215 |
Aromaticity | 0.0449438202247 |
Instability index | 96.9707865169 |
Isoelectric point | 11.7658081055 |
Runs | 11 |
Runs residual | 0.0196078431373 |
Runs probability | 0.0400828636123 |
Amino acid sequence | MRKLKLRKSPGSPARQLEVADLRGRPQPRWVLSGRPLLSPLRPSTAEAWSCPSRPLSWEL QPEGLGRQNVQSSQSWQPLPLPSGPSRLS |
Secondary structure | LLEEEELLLLLLHHHHHHHHHHLLLLLLLEEELLLLLLLLLLLLLHHHLLLLLLLLLLEE LLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |