NONHSAT079849
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079849 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1530 nt |
Genomic location |
chr20+:42839600..42854667 |
Exon number |
3 |
Exons |
42839600..42839717,42843528..42843643,42853461..42854667 |
Genome context |
|
Sequence |
000001 CTCAGAAGCA CGTGCGCCTT ACGTAATTTC CTGTTATTCT TCGGTTTGCC TCCTCCCAGT GGCGTGGATT TGCTCCCGAC 000080
000081 CCGCTTTTGG GGCGTGCCTG CTTCCTCCTC TCTGTTAGAT CTCGCTCTGT CACCCAGGCT GGAGTGAAAT GGCACAATCT 000160 000161 TGGCTCACTG TAACCTCCGC CCCCAGGTTC GACTGATTCT CGTGCCTCAG CCTCCTCAGT AGCTGGGATT ACAGATGAGC 000240 000241 CCCAGAGAGG CGAAGCCACT TGAGCTCGTG AGTGACAGTC AGATGTCAAG CCCTGCTCTT TCTAAAGCGT GCTGCCTTCA 000320 000321 GAAAAGAAGA GCCAGAAGGA TGGAAATTAC TTCAGAAAGA TGAATACCAG CTTTGAAGGA ATAAAAGCTG ACGAGGAATT 000400 000401 GAAGGAGTTG AGGCACGAGC TTGAACAGGG TTGCATGTTT GGCCCTTGAT TGTAAATGCC CATTGCTGCA CCTGTTCCTG 000480 000481 TTACTTGGGG AGTTGCAGCA GAAGGAACAG CGGCCTGGGA CTCCAGAGAA CTGGGTTCCC TCTCATCCCT CCAGGGCCAC 000560 000561 CACTTCTTGT GGGCCCTTGG GCAAGTCACT GTACTTTCTG AGTCTCAGTT TCCCCATTTG CAGAATGGAA ATAACTACCC 000640 000641 CGGTCTACCA ACTTAGAAGA ATTGCTTTGA GGATCTGATA AGGTGGTGTG GATGATGCTG CCTTGGGGGC TTTACAGTCT 000720 000721 GGAGCTCAAG GGACCCCTTA AGTTGGGCTT ACTTAGTAAC TCCAGGGGTG GGCAGAACAG GACTCCAATG AGGGTTTTTT 000800 000801 TCTTTTTCCC TTTTTTTTCT TTTCCTATCT CTTAACTTTT ATCTTTATTA TTTTACAATG CCCTTGTAAG ATGAAACAAG 000880 000881 TGATGCTGAA ATATCTTTTT CTTTTTTGAC CTTTATTTTA GAATTGGGGT ACATGTGCAG GTTTGTTACA TAGGTACAGT 000960 000961 GTGGGCTGCT GAGGTTTGGG AGTACGAATG AATTAGTCAC CCCAGTGGTG AGCATAGTGC CCGATAAGTG GTTTTTTCAA 001040 001041 CCCTTACTCC CATCCCTCTC CATTCTTGTG TTCCCCAGTG TCTGCTGTTC CCATTTTTAT GACCATGTGT ACTCAATGTT 001120 001121 TAGCTCCCAC TTAGAAGTAA GAACATGCCC AGCACTTTGG GAGGCCGAGG TGGGTGGATC ATGAGGTCAA GAGATCGAGA 001200 001201 CCATCTTGGC TAACAAAGTG AAACCCTGTC TCTACTAAAA ACATAAAAAA TTGGCCGGGT GTGGTGGTGG GCACCTGTAG 001280 001281 TCCTAGCTAC TCGGGAGGCT GAGACAGGAG AATCGCCTGA ACCGGGGAGG TGGAGGTTGC AGTGAGCTGA GATTGTACCA 001360 001361 CTGCACTCCA GCCTGGGTGA CAGAGTGAGA CTCCATCTCA AAAAAATAAA AATAAAAAAA TAAAAAGAAT GTGGTGTATG 001440 001441 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 001520 001521 AAAAAAAAAA |
Predicted Small Protein
Name | NONHSAT079849_smProtein_455:655 |
Length | 67 |
Molecular weight | 7010.7678 |
Aromaticity | 0.0909090909091 |
Instability index | 49.4560606061 |
Isoelectric point | 5.25042724609 |
Runs | 9 |
Runs residual | 0.0142442387951 |
Runs probability | 0.0249367014073 |
Amino acid sequence | MPIAAPVPVTWGVAAEGTAAWDSRELGSLSSLQGHHFLWALGQVTVLSESQFPHLQNGNN YPGLPT |
Secondary structure | LLLLLLLLLLLLLLLLLEEELLHHHHLLHHHHHHHHHHHHHLLEEEEELLLLLLLLLLLL LLLLLL |
PRMN | - |
PiMo | - |