NONHSAT079853

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT079853

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1728 nt

Genomic location

chr20+:42839726..42854667

Exon number

3

Exons

42839726..42840131,42843528..42843643,42853461..42854667

Genome context

Sequence
000001 GTAGGCGTCA TTCTTCACAG TAGTCCTCTG CCTCCACCGC CCCGGGATCT CCTTGCGCTC GGTCCTCTAC GTGGAGTCAC 000080
000081 CTATGCAGAG GAATTCCACG GGGCGGGGGC GAGGACAGGG TGCGGGGGTC TTTATGGCAG ACAATCCCCG GCTGAGCGCT 000160
000161 TGGCCAGAGT TTCTGTGATG CTAGAATCTG GACTGCCTGC GACCTCTCCG GGACTCGGAC ACCAGCCCTC GCCTCCTGGT 000240
000241 GATCTTTTAG GTCCTGCAGA GAAGTGAAGA GGTATTGGAC GTGGCCAGGG TCAATAGTGT GAAGCCAGAA TTAGAATTGA 000320
000321 ATTGAAATGC CTTCGGTTTT GATATCTCTG CTGTTTGTCT TGAGGCAACT GCTTTTCCTC CTTTGGGCCT CTCAGTTTTC 000400
000401 CATCTAATCT CGCTCTGTCA CCCAGGCTGG AGTGAAATGG CACAATCTTG GCTCACTGTA ACCTCCGCCC CCAGGTTCGA 000480
000481 CTGATTCTCG TGCCTCAGCC TCCTCAGTAG CTGGGATTAC AGATGAGCCC CAGAGAGGCG AAGCCACTTG AGCTCGTGAG 000560
000561 TGACAGTCAG ATGTCAAGCC CTGCTCTTTC TAAAGCGTGC TGCCTTCAGA AAAGAAGAGC CAGAAGGATG GAAATTACTT 000640
000641 CAGAAAGATG AATACCAGCT TTGAAGGAAT AAAAGCTGAC GAGGAATTGA AGGAGTTGAG GCACGAGCTT GAACAGGGTT 000720
000721 GCATGTTTGG CCCTTGATTG TAAATGCCCA TTGCTGCACC TGTTCCTGTT ACTTGGGGAG TTGCAGCAGA AGGAACAGCG 000800
000801 GCCTGGGACT CCAGAGAACT GGGTTCCCTC TCATCCCTCC AGGGCCACCA CTTCTTGTGG GCCCTTGGGC AAGTCACTGT 000880
000881 ACTTTCTGAG TCTCAGTTTC CCCATTTGCA GAATGGAAAT AACTACCCCG GTCTACCAAC TTAGAAGAAT TGCTTTGAGG 000960
000961 ATCTGATAAG GTGGTGTGGA TGATGCTGCC TTGGGGGCTT TACAGTATGG AGCTCAAGGG ACCCCTTAAG TTGGGCTTAC 001040
001041 TTAGTAACTC CAGGGGTGGG CAGAACAGGA CTCCAATGAG GGTTTTTTTC TTTTTCCCTT TTTTTTCTTT TCCTATCTCT 001120
001121 TAACTTTTAT CTTTATTATT TTACAATGCC CTTGTAAGAT GAAACAAGTG ATGCTGAAAT ATCTTTTTCT TTTTTAACCT 001200
001201 TTATTTTAGA ATTGGGGTAC ATGTGCAGGT TTGTTACATA GGTACAGTGT GGGCTGCTGA GGTTTGGGAG TACGAATGAA 001280
001281 TTAGTCACCC CAGTGGTGAG CATAGTGCCC GATAAGTGGT TTTTTCAACC CTTACTCCCA TCCCTCTCCA TTCTTGTGTT 001360
001361 CCCCAGTGTC TGCTGTTCCC ATTTTTATGA CCATGTGTAC TCAATGTTTA GCTCCCACTT AGAAGTAAGA ACATGCCCAG 001440
001441 CACTTTGGGA GGCCGAGGTG GGTGGATCAT GAGGTCAAGA GATCGAGACC ATCTTGGCTA ACAAAGTGAA ACCCTGTCTC 001520
001521 TACTAAAAAC ATAAAAAATT GGCCGGGTGT GGTGGTGGGC ACCTGTAGTC CTAGCTACTC GGGAGGCTGA GACAGGAGAA 001600
001601 TCGCCTGAAC CGGGGAGGTG GAGGTTGCAG TGAGCTGAGA TTGTACCACT GCACTCCAGC CTGGGTGACA GAGTGAGACT 001680
001681 CCATCTCAAA AAAATAAAAA TAAAAAAATA AAAAGAATGT GGTGTATG
[back to top]

Predicted Small Protein

Name NONHSAT079853_smProtein_743:943
Length 67
Molecular weight 7010.7678
Aromaticity 0.0909090909091
Instability index 49.4560606061
Isoelectric point 5.25042724609
Runs 9
Runs residual 0.0142442387951
Runs probability 0.0249367014073
Amino acid sequence MPIAAPVPVTWGVAAEGTAAWDSRELGSLSSLQGHHFLWALGQVTVLSESQFPHLQNGNN
YPGLPT
Secondary structure LLLLLLLLLLLLLLLLLEEELLHHHHLLHHHHHHHHHHHHHLLEEEEELLLLLLLLLLLL
LLLLLL
PRMN -
PiMo -