NONHSAT079853
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079853 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1728 nt |
Genomic location |
chr20+:42839726..42854667 |
Exon number |
3 |
Exons |
42839726..42840131,42843528..42843643,42853461..42854667 |
Genome context |
|
Sequence |
000001 GTAGGCGTCA TTCTTCACAG TAGTCCTCTG CCTCCACCGC CCCGGGATCT CCTTGCGCTC GGTCCTCTAC GTGGAGTCAC 000080
000081 CTATGCAGAG GAATTCCACG GGGCGGGGGC GAGGACAGGG TGCGGGGGTC TTTATGGCAG ACAATCCCCG GCTGAGCGCT 000160 000161 TGGCCAGAGT TTCTGTGATG CTAGAATCTG GACTGCCTGC GACCTCTCCG GGACTCGGAC ACCAGCCCTC GCCTCCTGGT 000240 000241 GATCTTTTAG GTCCTGCAGA GAAGTGAAGA GGTATTGGAC GTGGCCAGGG TCAATAGTGT GAAGCCAGAA TTAGAATTGA 000320 000321 ATTGAAATGC CTTCGGTTTT GATATCTCTG CTGTTTGTCT TGAGGCAACT GCTTTTCCTC CTTTGGGCCT CTCAGTTTTC 000400 000401 CATCTAATCT CGCTCTGTCA CCCAGGCTGG AGTGAAATGG CACAATCTTG GCTCACTGTA ACCTCCGCCC CCAGGTTCGA 000480 000481 CTGATTCTCG TGCCTCAGCC TCCTCAGTAG CTGGGATTAC AGATGAGCCC CAGAGAGGCG AAGCCACTTG AGCTCGTGAG 000560 000561 TGACAGTCAG ATGTCAAGCC CTGCTCTTTC TAAAGCGTGC TGCCTTCAGA AAAGAAGAGC CAGAAGGATG GAAATTACTT 000640 000641 CAGAAAGATG AATACCAGCT TTGAAGGAAT AAAAGCTGAC GAGGAATTGA AGGAGTTGAG GCACGAGCTT GAACAGGGTT 000720 000721 GCATGTTTGG CCCTTGATTG TAAATGCCCA TTGCTGCACC TGTTCCTGTT ACTTGGGGAG TTGCAGCAGA AGGAACAGCG 000800 000801 GCCTGGGACT CCAGAGAACT GGGTTCCCTC TCATCCCTCC AGGGCCACCA CTTCTTGTGG GCCCTTGGGC AAGTCACTGT 000880 000881 ACTTTCTGAG TCTCAGTTTC CCCATTTGCA GAATGGAAAT AACTACCCCG GTCTACCAAC TTAGAAGAAT TGCTTTGAGG 000960 000961 ATCTGATAAG GTGGTGTGGA TGATGCTGCC TTGGGGGCTT TACAGTATGG AGCTCAAGGG ACCCCTTAAG TTGGGCTTAC 001040 001041 TTAGTAACTC CAGGGGTGGG CAGAACAGGA CTCCAATGAG GGTTTTTTTC TTTTTCCCTT TTTTTTCTTT TCCTATCTCT 001120 001121 TAACTTTTAT CTTTATTATT TTACAATGCC CTTGTAAGAT GAAACAAGTG ATGCTGAAAT ATCTTTTTCT TTTTTAACCT 001200 001201 TTATTTTAGA ATTGGGGTAC ATGTGCAGGT TTGTTACATA GGTACAGTGT GGGCTGCTGA GGTTTGGGAG TACGAATGAA 001280 001281 TTAGTCACCC CAGTGGTGAG CATAGTGCCC GATAAGTGGT TTTTTCAACC CTTACTCCCA TCCCTCTCCA TTCTTGTGTT 001360 001361 CCCCAGTGTC TGCTGTTCCC ATTTTTATGA CCATGTGTAC TCAATGTTTA GCTCCCACTT AGAAGTAAGA ACATGCCCAG 001440 001441 CACTTTGGGA GGCCGAGGTG GGTGGATCAT GAGGTCAAGA GATCGAGACC ATCTTGGCTA ACAAAGTGAA ACCCTGTCTC 001520 001521 TACTAAAAAC ATAAAAAATT GGCCGGGTGT GGTGGTGGGC ACCTGTAGTC CTAGCTACTC GGGAGGCTGA GACAGGAGAA 001600 001601 TCGCCTGAAC CGGGGAGGTG GAGGTTGCAG TGAGCTGAGA TTGTACCACT GCACTCCAGC CTGGGTGACA GAGTGAGACT 001680 001681 CCATCTCAAA AAAATAAAAA TAAAAAAATA AAAAGAATGT GGTGTATG |
Predicted Small Protein
Name | NONHSAT079853_smProtein_743:943 |
Length | 67 |
Molecular weight | 7010.7678 |
Aromaticity | 0.0909090909091 |
Instability index | 49.4560606061 |
Isoelectric point | 5.25042724609 |
Runs | 9 |
Runs residual | 0.0142442387951 |
Runs probability | 0.0249367014073 |
Amino acid sequence | MPIAAPVPVTWGVAAEGTAAWDSRELGSLSSLQGHHFLWALGQVTVLSESQFPHLQNGNN YPGLPT |
Secondary structure | LLLLLLLLLLLLLLLLLEEELLHHHHLLHHHHHHHHHHHHHLLEEEEELLLLLLLLLLLL LLLLLL |
PRMN | - |
PiMo | - |