NONHSAT079872

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT079872

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

1866 nt

Genomic location

chr20-:43001294..43014672

Exon number

2

Exons

43001294..43001649,43013163..43014672

Genome context

Sequence
000001 aaaaaattag ccaggcgtga tggtgcatgc ctgtaatccc agctactcgg gaggctgaag caggagaatc gcttgaacct 000080
000081 gggaggtgga ggttccagtg agtgaagatc gtgccactgc actccagcct gggcgccaga gcgagaccct gccttaaaaa 000160
000161 aaacaacaaa aaaaaTCAGA TGCCTGGGGT CCTACCTCCA GGTGCCAGGA CCAACAGTGG GCCTAGTCAT CAGattaaaa 000240
000241 aaaagaaaat atttaataaa taGAGGTGgg gcatggtggc tcatgcctgt aatcccaaca ctttgggagg ccaaggcagg 000320
000321 tggatcactg gagactaaga attcaagacc agcctggcca acatggtgaa accttgtctc tactaaaagt acaaaaacta 000400
000401 gctgggtgtg gtggtgcatg cctgtaattt cagctacttg ggaggctggg gcaggagaat tgcttgaacc tgggaggcgg 000480
000481 aggttgcagt gagaagagat caggccacta cactccagcc tgggcgacag agtgagagtc cataaattaa taaacaaaca 000560
000561 aaTTAATTAA TTAAAAAAta gagacggggg gaggtgtctt gctatgttgt ccaggcttgt cttgaacccc agcctcaagc 000640
000641 aaatcagcct cccaaagtgc tgggattaaa ggcaggagcc atggagcacc tggccCAAGT GTTTAATGAG CTTCTGGGCA 000720
000721 CTTCTGATAC CAGGTGCCCT CAGACCGCAC TTTGAAAACT CCTCAAGGAG GCCTCTCAAT CACCTGATCA CCAAACCCTG 000800
000801 TGTGAGGCTC CCTACCCACC TGGACCCTCT CCTTGAATTC CTCTCCTTTC CAATTATTAC CCTTCCCTAG ATAGCAAGTG 000880
000881 GTGACAGAAC CAAACCCTAG CTCAGCCAAA GCCCAAATTG CCTCATCTCC CTTCAGGGAA TAGGCaaaaa aaaaaaaaaa 000960
000961 aaaaaaaaaa aaaGATCACA GAGTTCAGCT GAAACCACTT AGGAAATATC AGCATCCCCA CCTCCCCACC CAAAAGGACT 001040
001041 CCTGAGTGGC AGCCTGAGAG GTGTGTCTGC TCATCAGAAT AATGTTGTCA GACTGTGTTC TTTCTGGGGG ATCATCACAC 001120
001121 TCCCTTTTCT GGGAACAAAT GTTGGCCACT TGGTGGGATG GGCCATCATG ATCTACGTCA GACAAATTCA GTGAGTCATG 001200
001201 ACTCAGCCTA TCTCTCTAGA CCCATCTTTT ATGCCCCCTT ACTTATAGTC TCTCTGaggg ctgttctcaa ctattctatt 001280
001281 tctctccttt ccggcacatg atggggatta cattttcttg cttcctttga aatgagatgt gaccatgtta cttgtttcag 001360
001361 gtaacgagat gtgagcagaa acaacctgtg tcacacctgg gcagaagctt taaaggccag tgcTGCCCTT GTTGGGGAAG 001440
001441 CAAGTATAGA TATGAATCGT TCCacaacgc ggagcgcccc ctgccgaccc atgctgggcg tgtactatag atgaggagac 001520
001521 tgaggatcag agagataaag tcacctgtcc aaggtcatac tgtggatgta gctctaaccc aagccctccc gactgcagca 001600
001601 caaattctca gccactaccc tattagcccc tTCATTTGAA GGTGTCTTCA TCATTGCCAA GATTCCTTTT CCTCCCGGCC 001680
001681 CCCTAAGTCT TCAGGATTCC CTCATCTCAT CTCCCCAGAG AAGCCATGAC ACCATCTTCT CCAAAAACAA AGTCAGCGCT 001760
001761 TTCACTGTAG ATGGACCTGT GTTCTTCCCC CAAACTCAGT CCACCTCATC TCCAGAAAAA CTATATGACT TGCCCTGGAG 001840
001841 AAGAGGGGGA AAAAAAAACC TCTTCC
[back to top]

Predicted Small Protein

Name NONHSAT079872_smProtein_1157:1300
Length 48
Molecular weight 5214.9084
Aromaticity 0.0851063829787
Instability index 43.6363829787
Isoelectric point 8.31048583984
Runs 4
Runs residual 0.081170212766
Runs probability 0.00103780250839
Amino acid sequence MGHHDLRQTNSVSHDSAYLSRPIFYAPLLIVSLRAVLNYSISLLSGT
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLEEHHHHHHHHHHHHHHHHHHHLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooo