NONHSAT079872
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT079872 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1866 nt |
Genomic location |
chr20-:43001294..43014672 |
Exon number |
2 |
Exons |
43001294..43001649,43013163..43014672 |
Genome context |
|
Sequence |
000001 aaaaaattag ccaggcgtga tggtgcatgc ctgtaatccc agctactcgg gaggctgaag caggagaatc gcttgaacct 000080
000081 gggaggtgga ggttccagtg agtgaagatc gtgccactgc actccagcct gggcgccaga gcgagaccct gccttaaaaa 000160 000161 aaacaacaaa aaaaaTCAGA TGCCTGGGGT CCTACCTCCA GGTGCCAGGA CCAACAGTGG GCCTAGTCAT CAGattaaaa 000240 000241 aaaagaaaat atttaataaa taGAGGTGgg gcatggtggc tcatgcctgt aatcccaaca ctttgggagg ccaaggcagg 000320 000321 tggatcactg gagactaaga attcaagacc agcctggcca acatggtgaa accttgtctc tactaaaagt acaaaaacta 000400 000401 gctgggtgtg gtggtgcatg cctgtaattt cagctacttg ggaggctggg gcaggagaat tgcttgaacc tgggaggcgg 000480 000481 aggttgcagt gagaagagat caggccacta cactccagcc tgggcgacag agtgagagtc cataaattaa taaacaaaca 000560 000561 aaTTAATTAA TTAAAAAAta gagacggggg gaggtgtctt gctatgttgt ccaggcttgt cttgaacccc agcctcaagc 000640 000641 aaatcagcct cccaaagtgc tgggattaaa ggcaggagcc atggagcacc tggccCAAGT GTTTAATGAG CTTCTGGGCA 000720 000721 CTTCTGATAC CAGGTGCCCT CAGACCGCAC TTTGAAAACT CCTCAAGGAG GCCTCTCAAT CACCTGATCA CCAAACCCTG 000800 000801 TGTGAGGCTC CCTACCCACC TGGACCCTCT CCTTGAATTC CTCTCCTTTC CAATTATTAC CCTTCCCTAG ATAGCAAGTG 000880 000881 GTGACAGAAC CAAACCCTAG CTCAGCCAAA GCCCAAATTG CCTCATCTCC CTTCAGGGAA TAGGCaaaaa aaaaaaaaaa 000960 000961 aaaaaaaaaa aaaGATCACA GAGTTCAGCT GAAACCACTT AGGAAATATC AGCATCCCCA CCTCCCCACC CAAAAGGACT 001040 001041 CCTGAGTGGC AGCCTGAGAG GTGTGTCTGC TCATCAGAAT AATGTTGTCA GACTGTGTTC TTTCTGGGGG ATCATCACAC 001120 001121 TCCCTTTTCT GGGAACAAAT GTTGGCCACT TGGTGGGATG GGCCATCATG ATCTACGTCA GACAAATTCA GTGAGTCATG 001200 001201 ACTCAGCCTA TCTCTCTAGA CCCATCTTTT ATGCCCCCTT ACTTATAGTC TCTCTGaggg ctgttctcaa ctattctatt 001280 001281 tctctccttt ccggcacatg atggggatta cattttcttg cttcctttga aatgagatgt gaccatgtta cttgtttcag 001360 001361 gtaacgagat gtgagcagaa acaacctgtg tcacacctgg gcagaagctt taaaggccag tgcTGCCCTT GTTGGGGAAG 001440 001441 CAAGTATAGA TATGAATCGT TCCacaacgc ggagcgcccc ctgccgaccc atgctgggcg tgtactatag atgaggagac 001520 001521 tgaggatcag agagataaag tcacctgtcc aaggtcatac tgtggatgta gctctaaccc aagccctccc gactgcagca 001600 001601 caaattctca gccactaccc tattagcccc tTCATTTGAA GGTGTCTTCA TCATTGCCAA GATTCCTTTT CCTCCCGGCC 001680 001681 CCCTAAGTCT TCAGGATTCC CTCATCTCAT CTCCCCAGAG AAGCCATGAC ACCATCTTCT CCAAAAACAA AGTCAGCGCT 001760 001761 TTCACTGTAG ATGGACCTGT GTTCTTCCCC CAAACTCAGT CCACCTCATC TCCAGAAAAA CTATATGACT TGCCCTGGAG 001840 001841 AAGAGGGGGA AAAAAAAACC TCTTCC |
Predicted Small Protein
Name | NONHSAT079872_smProtein_1157:1300 |
Length | 48 |
Molecular weight | 5214.9084 |
Aromaticity | 0.0851063829787 |
Instability index | 43.6363829787 |
Isoelectric point | 8.31048583984 |
Runs | 4 |
Runs residual | 0.081170212766 |
Runs probability | 0.00103780250839 |
Amino acid sequence | MGHHDLRQTNSVSHDSAYLSRPIFYAPLLIVSLRAVLNYSISLLSGT |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLEEHHHHHHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooo |