NONHSAT079881
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079881 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2729 nt |
Genomic location |
chr20+:43120516..43123244 |
Exon number |
1 |
Exons |
43120516..43123244 |
Genome context |
|
Sequence |
000001 TACACTGCAT TCCTGGCCAG TCGCATTTGT TTTAATGCAG GCATGGCCAC AGCTCTCCTA GAGAATTATC TCAAAGACCA 000080
000081 GAAGGGACCT GGAGAGGCCT ATTTCTTAGG TTTTTCCAGT TGGACAAGGA AGGAGTGGTT TCACTCAGCT TCTAGAAGGA 000160 000161 GTTGGAGCCT AAGTTTATCT GCCTCCGGGA GCTGCTTGCT TTGTTTTGGC TCCGAAGAGG TATCAGATAG TTTTGACACC 000240 000241 TCAGGAAACT TGAACCAAGC TGTGAAACCA AGACCTCCCT ACGTGAAAAT CAAGGTGGTC TCCTTGTGGC TTCACCAGGA 000320 000321 TGTTTGTGTC AGGCTGTCTC AGCAGGGTGG GGAATGACCA GCCAGGGAGC ACAGTGAGCC TTACTCAGCA CTGGGGAGCG 000400 000401 CACTGGTGAG GCAAACCCAT GAACCTCAAG AACTGGGAGT ATGTTCCTTC AGGGAGAAGT TCTGGCCCAT TGCACAAACA 000480 000481 CTTGGAAATT AACTTTTCCC TAAATTCAAG ATAGTGTGGT GTCGGAAGGA AATGGGACAG TAAATTAGGA GACGCGGGCT 000560 000561 CCACCTTTAC CTTACTACGT GGCCTTTGAT GAGCTGGCTT AACATCCCTG AGTGATTCCA TGATAGAGAT CTATACTCCA 000640 000641 AACTTTATTC CTGGTATCTA GTTGGCTTCA CTGCCACAGA CACTGTACTC TCTCTTTTTA GAAGTTTTTT TCCTTTTTTT 000720 000721 TCCCCCTCAA TTGGCTTATT TAGTAAATTT AGGTCTGAAT GAATTGGTAC CTAAAAGCTT CCAAATCTAT ACATTTCAGA 000800 000801 ATATGGGAAT TTTCTTCCTC TTCTTCCCCC ATATCCCAAC ATGGAGTTCT GGAAAACTGT GCCTCTTCCC CTGTTCTGCC 000880 000881 TTCATGGGGG AGAGACTGGA TGAAATCTAC AAAAACAGCC AAAAGTGCCA CCCTGGCTTC ATGTCTTGAA TTTCTAACTT 000960 000961 GCTCTTGGCA AAGGTCGCTT TATTTTTTAA TTTTTTTCCT TGCATTTTCT TTTTTATTCT ATTGCTGCTG CAAAAATTAA 001040 001041 GGCAAAAGTA GCTTTCGATC TTTCATATTT CATCCTGGTT TCACAAGGAG TCACTTATCT TAGGAGGTCT GTAAGTCAGG 001120 001121 TTACAAGGCC GGGAGCGGTG GCTCACACCT GTAATCCCAA CACTTTGAGC GGCTGAGGTG GGTGTATCAC CTGAAGTCCG 001200 001201 GAGTTTGAGA CCAGCCTGGC CAACATGGTG AAACCCCGTC TCTACTAAAA ATACAAAAAA TTGGCTGGGC ATGGTGGTGG 001280 001281 GTGCCTGTAA TCCCAGCTAC TTGGGAAGCT GAAGCAGGAG AATCACTTAA ACCCAGGTGG CGGAGGTTGC AGTGAGCCGA 001360 001361 CATCGCGCCA TTGCACTCCA GCCTGGGTGA CGAGTGAAAC TCCATCTCAA AAATAAAAAT TGAAAAATCA GGTTACAAAA 001440 001441 CACCATTTTT CCCGAAATAA GACAATAAGA GGCTTTTCTG TGAATTCCTT TATATTGAGC CTTTCAGAAT TCTCCCTGGG 001520 001521 TGGGCAATTT CTTTAAATAG TATTTGACCC TCAGATCAAT CCTGGGAATT TTTTCCATTT GGGTAGCAAA AGCTAGAGTA 001600 001601 TTGCTGTGGC GATTATAATA CTTTTAAAAA GTTTTACCAT TTTAAAGTTG CCAACATTTA ATTAAGGTTT TCCTTTGAAG 001680 001681 CCTCCTTTAA TTTAGGGAGT AAAATGTTAG CTAAACCAAT TATATACTAT ATACTATACA CTGTATCTCC TGTGGCCATG 001760 001761 AGAGGTGTGG CTATACCGAA CAGAAACATG CCTACTGTTC AGGAAAGATG TCAGTTCTGG TAACACCTCT CTGTATTGGG 001840 001841 ATCTGTTAAT TTTGTAAATC TAAATTCTTC TGCTCTTGGC CAGGTGCAGT AGTTCATGCC CTGTAATCCT AGAACTTTGG 001920 001921 GAGGCTGAAG GGGGGGCGGA TCATTTGAGG TCAGGAGTTT GAGACCAGCC TGGCCAACAT GGTGAAACCC CATCTCTACT 002000 002001 AAAAAGTACA AAAATTAGCT GGGTGTGGTG GTGCGTGCCT GTAATCCCAA CTACTTGGGA GGCTGAGGCA GGAGAATCGC 002080 002081 TTGAACCTGG GAGGCAGCGG TTGCAGTAAG CCAAGACTAT GCCACTGCAC TCCCGCCTGG GTGACAAAGC AATATTCTGT 002160 002161 GTCAAATAAA TAAATTCATT CTTCTGCTCT CCTGACTTAG AGAAATGGTT TGCTTAAAAT GCTAGTAACA AACATCACAG 002240 002241 TCAACAGGAG CTTGCTTCAT GCGAAGGATC AATGTGATTT GTGGATGGAG ATGATGGTGA TGAAATTCCT GTTTCATGGG 002320 002321 GCTGTTTTTC TTTTCATCTC ACTGGGCAGC AGGTTTAGTG AGGCAGTGAG ATGCTGCTGC TGTGGATTCT TGTAGCTATG 002400 002401 CCTCGGCTTC TTGGCATATC AGGTAGGAAC CTGTTACAAG TGAAATACTT GAAACCTCTC TGACCAAGAG CCTCTGATGG 002480 002481 AGTGGGAGGT GAGCTAATTC TCTGACCAGC TTGGGGCACT GTTTCAGCCA CTGGTCACAT TCCTTGCTTC AAACTGAAAT 002560 002561 TCAGTTTGGC TTTGAGTATA GGGATACATG GTGGATTCAT GTACTTCAGT GTTTGTTTTG ACCAAAGTTT ATTTTTCTAG 002640 002641 TGCATTTTCT AAGTCAAAGT GGTGAAAATA TGTAATAATT TTAGTATGCA TGACTCAGTC TGAAACAATA AAAATCTCTG 002720 002721 AAAAATGTG |
Predicted Small Protein
Name | NONHSAT079881_smProtein_758:1039 |
Length | 94 |
Molecular weight | 10756.3768 |
Aromaticity | 0.182795698925 |
Instability index | 49.9775268817 |
Isoelectric point | 9.03631591797 |
Runs | 12 |
Runs residual | 0.00189167662286 |
Runs probability | 0.0278366601896 |
Amino acid sequence | MNWYLKASKSIHFRIWEFSSSSSPISQHGVLENCASSPVLPSWGRDWMKSTKTAKSATLA SCLEFLTCSWQRSLYFLIFFLAFSFLFYCCCKN |
Secondary structure | LLEEELLLLEEEEEEEEEELLLLLLLLLLEELLLLLLLLLLLLLHHHHHHHHHHHHHHHH HHHHHHLLHHHHHHHHHHHHHHHHHHEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiTTTTTTTTTTTTTTTTTTTooooooo |