NONHSAT079968

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT079968

Source

NONCODE4.0

Same with

,

Classification

sense

Length

4017 nt

Genomic location

chr20-:44170484..44175996

Exon number

2

Exons

44170484..44174409,44175906..44175996

Genome context

Sequence
000001 ATGGGATCTT CTGGACTTTT GAGCCTCCTG GTGCTATTCG TCCTCTTAGC GAATGTCCAG GGACCTGGTC TGACTGATTG 000080
000081 GTTATTTCCC AGGAGATGTC CCAAAATCAG AGAAGAATGT GAATTCCAAG AAAGGGATGT GTGTACAAAG GACAGACAAT 000160
000161 GCCAGGACAA CAAGAAGTGT TGTGTCTTCA GCTGCGGAAA AAAATGTTTA GATCTCAAAC AAGGTAATAT TCAGAGCTGC 000240
000241 AGAATAACCA ACCCCTCCTC CCCCTGTCCT CACCTTCTGC CTTCCTGGAC TGGCTTTGTG CCCTGATCGC TGAGGGCTGG 000320
000321 TCTCtggcaa aactgctgga cttgggagac ctgcgattta gattcattac tgtgccaaat atggtgtgtg ccattaggaa 000400
000401 tgaccttatc ctatcaggta atgtctgaga ctcagtttcc CAGAACAAAT CATTGGTGAA TCAGTGGCAT TGAATCAGAT 000480
000481 TCTTTTGGCT ATTTGGATAC CTGTCACTCT TATAATTTTT TGAGCTCCCA GGTGGCCATC GTTGCCCTAA CATATGCTGC 000560
000561 AAGTGATAAA TTAAGCAATT TATATTTCCC AACTTTTTTG CTATGGAGTG ACCACCTCTC TGCCTACACA AATCCAACTT 000640
000641 TGCACCAAAA CGCCTCTCCT GACTGCTCCA GAACAGAGGG TTTCTCCTTT CTGCTGCATC TTAGTTTCAT GCCCATCACC 000720
000721 CTGGGATGCA AAAAGACTAT CAAAGATTCT GTTtttattc attcaacaaa tactgattga gtgcctCTGA GACCCACAAT 000800
000801 AGGATTTGGT CTCAGTGTgg tcaggggggt tgggattgcc ttctttgaga aagaaaatct ggggttgagt tgagaaagat 000880
000881 gggtaatgtt ttaggcaaaa agtgggtgga ggggttttcc aggcacaggc agtagcatgc acaaaggctc agtggtgggg 000960
000961 ccttgggagt ccagaacgca gagtgagcac gagcatggta caaggaaaac agattctggg tgggcagaga tcaaacaatt 001040
001041 caggtatggt gggccagatT AAAGAGTCTT GCCTGGATCC CAAGGGCTAT GGCAATCCAC CGAGGCGGGG CATCATATGA 001120
001121 CCAGGTTCAT ACTACATCTA TCGAGTTTAA AATAGGAGGA ACAGAGTATC TTAAAGGACT TCAAGATGAT AGAAATGGTG 001200
001201 GCCGGAACTA GAGGTAGCTG AGGGGATGAA GAAGAGTAGG ACCTGCTTGA AAGAAAGAGT AGGACATAGG AGGCAAAGTG 001280
001281 AACAGGACTT GACAGAGAAG TAGAGTGGGC AGGTTAGGGG GCTAAGTCAC TCATATGCCA GCAGgtaagg attctgaatt 001360
001361 cagccatcct gagttcaact cttacctcca gtttttacga gcctttttgt cttggataaa ttaacaactt tccctcactg 001440
001441 tgagtcagtt tcctcagata ataaaaggat cagtgtaaaa gattattttg aggatccaat tgatctgcat gatgtgatta 001520
001521 gagttatgcc tggcacacag tagccacctg atacctattc gcttatttgt aattcttggc taagggctcc taaatagcag 001600
001601 agatcatgcc ttttctctgt tccttgaagc attgagcaca taataggtgc tcaatgaata atttattCAG TTCAGATCAG 001680
001681 GATACATTTC GTTTATCCTC AACGTTCCAT AAGGTTCTGT ACtgtgccag gctacctgtt aggaattggg atgccaagat 001760
001761 gaaagcagat acactagaaa ctcactccct gctcactaga aactcacagc ctcagggatg agactgaaga tataaacaaa 001840
001841 TGAAAAATGA ATGCACAAGA CTCTGAAGCA AGGTGTGGCA GTGAGGAATG TAGAATGGGG TCAAGAGTGA CATCACAGCA 001920
001921 GTTGATGTCT GAGAAAGGTT TTGAAGTAAG AAGAGTGTCA CTGTGagcag tgcaaaggga tggaggtata gaggtagcac 002000
002001 ggtgtgttga gtactgctgg agcatgtggc tcaaaggggt tctgcggcag gagaggaggc cagcgtcaca gtaggagcca 002080
002081 gacaatgaag ggccttgtgg gtcatgggag gacattgtca tagagtgaag gtaggtcttc tctgtgcaat gacatgataa 002160
002161 gcctggctct cagatccatc agatccttct ctctggtggg aagcatgaag gattgattgg aggggccagg aatggaggca 002240
002241 gggggatcaa tctgaggtca cctcaacagt ccaggcatga gacactgagg cttatattaa agagactggc agagaggtgA 002320
002321 GCTATTAGGA GGTAAAAATC AACAGGATCT AATTGTTTAG CAGTGGAGAT TTACCCAAAT GGAACTGTGT AAGCATTATT 002400
002401 TAGTTGGGAC Ctgcatttgt ttggtagagt tgctataaca aagcaccact gactgggagt cttaaacaac agaaatgtat 002480
002481 tgtctcacag ttcctcaggc tagaagtccg agatcaaggt gtcagcatgg ttggttcctt gtcagggtta tggggaagaa 002560
002561 gcatgttcca ttgctctccc ctggcttctg gtgctttgct ggcaatcttt ggtgttcttt ggcttgtaga cacatcaccc 002640
002641 cgatctctgc cttcacattc atatggtgtt ctcacagtgt gtgtgcctct gtccaaatta acctgtttgt ataaggacac 002720
002721 cagtcatatt ggtatagggg cccaccctat tttggtctga cctcatttta gctaattaca cctgcaacaa ccctatctcc 002800
002801 agggatgcag atgcccactc tggggtCTCC TTGCAAATGT GTGCAATATG TCAGTGGAGC TGTGCTCCTG CCATGTGATA 002880
002881 AGAGAAAAGG AGCCTACTCC AGTTTCTTCT ATAGCAGTTG CCAGGGAGAA TAATAACAAC TGTTTATTTC TGGAGTGGGC 002960
002961 ACACTGAGTT TTCAACTCTG GAGTCTCTCT GCAGATGTAT GCGAAATGCC AAAAGAAACT GGCCCCTGCC TGGCTTATTT 003040
003041 TCTTCATTGG TGGTATGACA AGAAAGATAA TACTTGCTCC ATGTTTGTCT ATGGTGGCTG CCAGGGAAAC AATAACAACT 003120
003121 TCCAATCCAA AGCCAACTGC CTGAACACCT GCAAGAATAA ACGTAAGTCC TAGGGGCCCC GGTCTTTCAT CCTCTCCAGT 003200
003201 CCCATGCCGG GAGGTCTGGG TGTTGGCTGG TCCATTCCAG GACAGCTACA TCTTTGGCAG ACCTGGTGCT GACAGAACCA 003280
003281 GCTCTGATCA GGAGGTAAGA ATGCACCTGG CAAAAGGCAA GACAAAGTTA CTTTCTGAGT ATGAGGAACT GAGGATGAGA 003360
003361 AGGGATGTAG AAGTAATCAA TGCTGGCAAG TATGAGGGGA ATTAGGAGGG GTGGAGGAAG GGTGTAGAAG TGGTGAAATC 003440
003441 TCAGAGATGA ATTGCAGAAG AGGCACAGGA CGCTAAACTT AAGACACGTT GACCAACCAA CCCTTCTAAG CCATCAATGT 003520
003521 CTCAACACAA CTCTTTGGCA GCGATTCACT CCTATTTGTT TTTCCTTGAA GGAGATGGAG AGCTCCCCAA AGCAAACCCA 003600
003601 CTACTTTTTA GTGTCTTTCT GTGCAAAGAT GTATAAACAT AACTTCAAGC TCCAAAGATG AGCTGAACCC AAGATGCTCA 003680
003681 GCTGTTTCTG TCCTACGTTC TCTGCAGGCT TTCCCTGATT GGATAAGGAT GCACTGGAAG AACTGCCAGA ATGTGGCTCA 003760
003761 TGCTCTGAGT ACTGTTCCTG TACCTGACGG ATGCTCCAGA CTGGCTTCCA GTTTCACTCT CAGCATTCCA AGATCTTAGC 003840
003841 CCTTCCCAGA ACAGAACGCT TGCATCTACC TCCTCTTCCT CCATCTTTGG CTCTTTTGAT GCACAATATC CATCCGTTTT 003920
003921 GATTTCATCT TTATGTCCCC TTTATCTCCA ACTTCTAGAA CTCCCAGTTT ATACCTGTGT CACTCTCAAT TTTTTCCAGT 004000
004001 AAAGTACTTG ATGTAGT
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Predicted Small Protein

Name NONHSAT079968_smProtein_2474:2713
Length 80
Molecular weight 8999.6377
Aromaticity 0.139240506329
Instability index 61.6215189873
Isoelectric point 9.48822021484
Runs 13
Runs residual 0.0242760534073
Runs probability 0.0448208389385
Amino acid sequence MYCLTVPQARSPRSRCQHGWFLVRVMGKKHVPLLSPGFWCFAGNLWCSLACRHITPISAF
TFIWCSHSVCASVQINLFV
Secondary structure LEEEELLLLLLLLLLLLLLEEEEEELLLLLLLLLLLLHHHHLLLHHHHHHHLLLLLLLLE
EEEEELLEEEEEEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHH
HHHHHHLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTT
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