NONHSAT079968
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079968 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4017 nt |
Genomic location |
chr20-:44170484..44175996 |
Exon number |
2 |
Exons |
44170484..44174409,44175906..44175996 |
Genome context |
|
Sequence |
000001 ATGGGATCTT CTGGACTTTT GAGCCTCCTG GTGCTATTCG TCCTCTTAGC GAATGTCCAG GGACCTGGTC TGACTGATTG 000080
000081 GTTATTTCCC AGGAGATGTC CCAAAATCAG AGAAGAATGT GAATTCCAAG AAAGGGATGT GTGTACAAAG GACAGACAAT 000160 000161 GCCAGGACAA CAAGAAGTGT TGTGTCTTCA GCTGCGGAAA AAAATGTTTA GATCTCAAAC AAGGTAATAT TCAGAGCTGC 000240 000241 AGAATAACCA ACCCCTCCTC CCCCTGTCCT CACCTTCTGC CTTCCTGGAC TGGCTTTGTG CCCTGATCGC TGAGGGCTGG 000320 000321 TCTCtggcaa aactgctgga cttgggagac ctgcgattta gattcattac tgtgccaaat atggtgtgtg ccattaggaa 000400 000401 tgaccttatc ctatcaggta atgtctgaga ctcagtttcc CAGAACAAAT CATTGGTGAA TCAGTGGCAT TGAATCAGAT 000480 000481 TCTTTTGGCT ATTTGGATAC CTGTCACTCT TATAATTTTT TGAGCTCCCA GGTGGCCATC GTTGCCCTAA CATATGCTGC 000560 000561 AAGTGATAAA TTAAGCAATT TATATTTCCC AACTTTTTTG CTATGGAGTG ACCACCTCTC TGCCTACACA AATCCAACTT 000640 000641 TGCACCAAAA CGCCTCTCCT GACTGCTCCA GAACAGAGGG TTTCTCCTTT CTGCTGCATC TTAGTTTCAT GCCCATCACC 000720 000721 CTGGGATGCA AAAAGACTAT CAAAGATTCT GTTtttattc attcaacaaa tactgattga gtgcctCTGA GACCCACAAT 000800 000801 AGGATTTGGT CTCAGTGTgg tcaggggggt tgggattgcc ttctttgaga aagaaaatct ggggttgagt tgagaaagat 000880 000881 gggtaatgtt ttaggcaaaa agtgggtgga ggggttttcc aggcacaggc agtagcatgc acaaaggctc agtggtgggg 000960 000961 ccttgggagt ccagaacgca gagtgagcac gagcatggta caaggaaaac agattctggg tgggcagaga tcaaacaatt 001040 001041 caggtatggt gggccagatT AAAGAGTCTT GCCTGGATCC CAAGGGCTAT GGCAATCCAC CGAGGCGGGG CATCATATGA 001120 001121 CCAGGTTCAT ACTACATCTA TCGAGTTTAA AATAGGAGGA ACAGAGTATC TTAAAGGACT TCAAGATGAT AGAAATGGTG 001200 001201 GCCGGAACTA GAGGTAGCTG AGGGGATGAA GAAGAGTAGG ACCTGCTTGA AAGAAAGAGT AGGACATAGG AGGCAAAGTG 001280 001281 AACAGGACTT GACAGAGAAG TAGAGTGGGC AGGTTAGGGG GCTAAGTCAC TCATATGCCA GCAGgtaagg attctgaatt 001360 001361 cagccatcct gagttcaact cttacctcca gtttttacga gcctttttgt cttggataaa ttaacaactt tccctcactg 001440 001441 tgagtcagtt tcctcagata ataaaaggat cagtgtaaaa gattattttg aggatccaat tgatctgcat gatgtgatta 001520 001521 gagttatgcc tggcacacag tagccacctg atacctattc gcttatttgt aattcttggc taagggctcc taaatagcag 001600 001601 agatcatgcc ttttctctgt tccttgaagc attgagcaca taataggtgc tcaatgaata atttattCAG TTCAGATCAG 001680 001681 GATACATTTC GTTTATCCTC AACGTTCCAT AAGGTTCTGT ACtgtgccag gctacctgtt aggaattggg atgccaagat 001760 001761 gaaagcagat acactagaaa ctcactccct gctcactaga aactcacagc ctcagggatg agactgaaga tataaacaaa 001840 001841 TGAAAAATGA ATGCACAAGA CTCTGAAGCA AGGTGTGGCA GTGAGGAATG TAGAATGGGG TCAAGAGTGA CATCACAGCA 001920 001921 GTTGATGTCT GAGAAAGGTT TTGAAGTAAG AAGAGTGTCA CTGTGagcag tgcaaaggga tggaggtata gaggtagcac 002000 002001 ggtgtgttga gtactgctgg agcatgtggc tcaaaggggt tctgcggcag gagaggaggc cagcgtcaca gtaggagcca 002080 002081 gacaatgaag ggccttgtgg gtcatgggag gacattgtca tagagtgaag gtaggtcttc tctgtgcaat gacatgataa 002160 002161 gcctggctct cagatccatc agatccttct ctctggtggg aagcatgaag gattgattgg aggggccagg aatggaggca 002240 002241 gggggatcaa tctgaggtca cctcaacagt ccaggcatga gacactgagg cttatattaa agagactggc agagaggtgA 002320 002321 GCTATTAGGA GGTAAAAATC AACAGGATCT AATTGTTTAG CAGTGGAGAT TTACCCAAAT GGAACTGTGT AAGCATTATT 002400 002401 TAGTTGGGAC Ctgcatttgt ttggtagagt tgctataaca aagcaccact gactgggagt cttaaacaac agaaatgtat 002480 002481 tgtctcacag ttcctcaggc tagaagtccg agatcaaggt gtcagcatgg ttggttcctt gtcagggtta tggggaagaa 002560 002561 gcatgttcca ttgctctccc ctggcttctg gtgctttgct ggcaatcttt ggtgttcttt ggcttgtaga cacatcaccc 002640 002641 cgatctctgc cttcacattc atatggtgtt ctcacagtgt gtgtgcctct gtccaaatta acctgtttgt ataaggacac 002720 002721 cagtcatatt ggtatagggg cccaccctat tttggtctga cctcatttta gctaattaca cctgcaacaa ccctatctcc 002800 002801 agggatgcag atgcccactc tggggtCTCC TTGCAAATGT GTGCAATATG TCAGTGGAGC TGTGCTCCTG CCATGTGATA 002880 002881 AGAGAAAAGG AGCCTACTCC AGTTTCTTCT ATAGCAGTTG CCAGGGAGAA TAATAACAAC TGTTTATTTC TGGAGTGGGC 002960 002961 ACACTGAGTT TTCAACTCTG GAGTCTCTCT GCAGATGTAT GCGAAATGCC AAAAGAAACT GGCCCCTGCC TGGCTTATTT 003040 003041 TCTTCATTGG TGGTATGACA AGAAAGATAA TACTTGCTCC ATGTTTGTCT ATGGTGGCTG CCAGGGAAAC AATAACAACT 003120 003121 TCCAATCCAA AGCCAACTGC CTGAACACCT GCAAGAATAA ACGTAAGTCC TAGGGGCCCC GGTCTTTCAT CCTCTCCAGT 003200 003201 CCCATGCCGG GAGGTCTGGG TGTTGGCTGG TCCATTCCAG GACAGCTACA TCTTTGGCAG ACCTGGTGCT GACAGAACCA 003280 003281 GCTCTGATCA GGAGGTAAGA ATGCACCTGG CAAAAGGCAA GACAAAGTTA CTTTCTGAGT ATGAGGAACT GAGGATGAGA 003360 003361 AGGGATGTAG AAGTAATCAA TGCTGGCAAG TATGAGGGGA ATTAGGAGGG GTGGAGGAAG GGTGTAGAAG TGGTGAAATC 003440 003441 TCAGAGATGA ATTGCAGAAG AGGCACAGGA CGCTAAACTT AAGACACGTT GACCAACCAA CCCTTCTAAG CCATCAATGT 003520 003521 CTCAACACAA CTCTTTGGCA GCGATTCACT CCTATTTGTT TTTCCTTGAA GGAGATGGAG AGCTCCCCAA AGCAAACCCA 003600 003601 CTACTTTTTA GTGTCTTTCT GTGCAAAGAT GTATAAACAT AACTTCAAGC TCCAAAGATG AGCTGAACCC AAGATGCTCA 003680 003681 GCTGTTTCTG TCCTACGTTC TCTGCAGGCT TTCCCTGATT GGATAAGGAT GCACTGGAAG AACTGCCAGA ATGTGGCTCA 003760 003761 TGCTCTGAGT ACTGTTCCTG TACCTGACGG ATGCTCCAGA CTGGCTTCCA GTTTCACTCT CAGCATTCCA AGATCTTAGC 003840 003841 CCTTCCCAGA ACAGAACGCT TGCATCTACC TCCTCTTCCT CCATCTTTGG CTCTTTTGAT GCACAATATC CATCCGTTTT 003920 003921 GATTTCATCT TTATGTCCCC TTTATCTCCA ACTTCTAGAA CTCCCAGTTT ATACCTGTGT CACTCTCAAT TTTTTCCAGT 004000 004001 AAAGTACTTG ATGTAGT |
Predicted Small Protein
Name | NONHSAT079968_smProtein_2474:2713 |
Length | 80 |
Molecular weight | 8999.6377 |
Aromaticity | 0.139240506329 |
Instability index | 61.6215189873 |
Isoelectric point | 9.48822021484 |
Runs | 13 |
Runs residual | 0.0242760534073 |
Runs probability | 0.0448208389385 |
Amino acid sequence | MYCLTVPQARSPRSRCQHGWFLVRVMGKKHVPLLSPGFWCFAGNLWCSLACRHITPISAF TFIWCSHSVCASVQINLFV |
Secondary structure | LEEEELLLLLLLLLLLLLLEEEEEELLLLLLLLLLLLHHHHLLLHHHHHHHLLLLLLLLE EEEEELLEEEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHH HHHHHHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTT TTTTTTooooooooooooo |