NONHSAT080004
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT080004 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1733 nt |
Genomic location |
chr20+:44746990..44758502 |
Exon number |
10 |
Exons |
44746990..44747033,44750459..44750537,44750872..44750997,44751249..44751395,44751765..44751858,44755279..44755340,44755846..44755928,44756777..44756863,44756969..44756997,44757521..44758502 |
Genome context |
|
Sequence |
000001 GTCTGCCTCT GCAGTGCGTC CTCTGGGGCT GCTTGCTGAC CGCTGTCCAT CCAGAACCAC CCACTGCATG CAGAGAAAAA 000080
000081 CAGTACCTAA TAAACAGTCA GTGCTGTTCT TTGTGCCAGC CAGGACAGAA ACTGGTGAGT GACTGCACAG AGTTCACTGA 000160 000161 AACGGAATGC CTTCCTTGCG GTGAAAGCGA ATTCCTAGAC ACCTGGAACA GAGAGACACA CTGCCACCAG CACAAATACT 000240 000241 GCGACCCCAA CCTAGGGCTT CGGGTCCAGC AGAAGGGCAC CTCAGAAACA GACACCATCT GCACCTGTGA AGAAGGCTGG 000320 000321 CACTGTACGA GTGAGGCCTG TGAGAGCTGT GTCCTGCACC GCTCATGCTC GCCCGGCTTT GGGGTCAAGC AGATTGCTAC 000400 000401 AGGGGTTTCT GATACCATCT GCGAGCCCTG CCCAGTCGGC TTCTTCTCCA ATGTGTCATC TGCTTTCGAA AAATGTCACC 000480 000481 CTTGGACAAG CTGTGAGACC AAAGACCTGG TTGTGCAACA GGCAGGCACA AACAAGACTG ATGTTGTCTG TGggctggga 000560 000561 ctagaatgag gtgagcaagg cacttgccct cgggcgcaat atttaagaag gtgccataaa agtgtagtaa tcaagGTCCC 000640 000641 CAGGATCGGC TGAGAGCCCT GGTGGTGATC CCCATCATCT TCGGGATCCT GTTTGCCATC CTCTTGGTGC TGGTCTTTAT 000720 000721 CAAAAAGGTG GCCAAGAAGC CAACCAATAA GGCCCCCCAC CCCAAGCAGG AACCCCAGGA GATCAATTTT CCCGACGATC 000800 000801 TTCCTGGCTC CAACACTGCT GCTCCAGTGC AGGAGACTTT ACATGGATGC CAACCGGTCA CCCAGGAGGA TGGCAAAGAG 000880 000881 AGTCGCATCT CAGTGCAGGA GAGACAGTGA GGCTGCACCC ACCCAGGAGT GTGGCCACGT GGGCAAACAG GCAGTTGGCC 000960 000961 AGAGAGCCTG GTGCTGCTGC TGCTGTGGCG TGAGGGTGAG GGGCTGGCAC TGACTGGGCA TAGCTCCCCG CTTCTGCCTG 001040 001041 CACCCCTGCA GTTTGAGACA GGAGACCTGG CACTGGATGC AGAAACAGTT CACCTTGAAG AACCTCTCAC TTCACCCTGG 001120 001121 AGCCCATCCA GTCTCCCAAC TTGTATTAAA GACAGAGGCA GAAGTTTGGT GGTGGTGGTG TTGGGGTATG GTTTAGTAAT 001200 001201 ATCCACCAGA CCTTCCGATC CAGCAGTTTG GTGCCCAGAG AGGCATCATG GTGGCTTCCC tgcgcccagg aagccatata 001280 001281 cacagatgcc cattgcagca ttgtttgtga tagtgaacaa ctggaagctg cttaactgtc catcagcagg agactggcta 001360 001361 aataaaatta gaatatattt atacaacaga atctcaaaaa cactgttgag taaggaaaaa aaggcatgct gctgaatgat 001440 001441 gggtatggaa ctttttaaaa aagtacatgc ttttatgtat gtatattgcc tatggatata tgtataaata caatatgcat 001520 001521 catatattga tataacaagg gttctggaag ggtacacaga aaacccacag ctcgaagagt ggtgacgtct ggggtgggga 001600 001601 agaagggtct gggggagggt tggttaaagg gagatttggc tttcccataa tgcttcatca tttttCCCAA AAGGAGAGTG 001680 001681 AATTCACATA ATGCTTATGT AATTAAAAAA TCATCAAACA TGTAAAAAGA AAA |
Predicted Small Protein
Name | NONHSAT080004_smProtein_842:1012 |
Length | 57 |
Molecular weight | 6261.1671 |
Aromaticity | 0.0357142857143 |
Instability index | 79.5892857143 |
Isoelectric point | 9.54644775391 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.0394680394681 |
Amino acid sequence | MDANRSPRRMAKRVASQCRRDSEAAPTQECGHVGKQAVGQRAWCCCCCGVRVRGWH |
Secondary structure | LLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLEEEEEEL |
PRMN | - |
PiMo | - |