NONHSAT080004

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT080004

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1733 nt

Genomic location

chr20+:44746990..44758502

Exon number

10

Exons

44746990..44747033,44750459..44750537,44750872..44750997,44751249..44751395,44751765..44751858,44755279..44755340,44755846..44755928,44756777..44756863,44756969..44756997,44757521..44758502

Genome context

Sequence
000001 GTCTGCCTCT GCAGTGCGTC CTCTGGGGCT GCTTGCTGAC CGCTGTCCAT CCAGAACCAC CCACTGCATG CAGAGAAAAA 000080
000081 CAGTACCTAA TAAACAGTCA GTGCTGTTCT TTGTGCCAGC CAGGACAGAA ACTGGTGAGT GACTGCACAG AGTTCACTGA 000160
000161 AACGGAATGC CTTCCTTGCG GTGAAAGCGA ATTCCTAGAC ACCTGGAACA GAGAGACACA CTGCCACCAG CACAAATACT 000240
000241 GCGACCCCAA CCTAGGGCTT CGGGTCCAGC AGAAGGGCAC CTCAGAAACA GACACCATCT GCACCTGTGA AGAAGGCTGG 000320
000321 CACTGTACGA GTGAGGCCTG TGAGAGCTGT GTCCTGCACC GCTCATGCTC GCCCGGCTTT GGGGTCAAGC AGATTGCTAC 000400
000401 AGGGGTTTCT GATACCATCT GCGAGCCCTG CCCAGTCGGC TTCTTCTCCA ATGTGTCATC TGCTTTCGAA AAATGTCACC 000480
000481 CTTGGACAAG CTGTGAGACC AAAGACCTGG TTGTGCAACA GGCAGGCACA AACAAGACTG ATGTTGTCTG TGggctggga 000560
000561 ctagaatgag gtgagcaagg cacttgccct cgggcgcaat atttaagaag gtgccataaa agtgtagtaa tcaagGTCCC 000640
000641 CAGGATCGGC TGAGAGCCCT GGTGGTGATC CCCATCATCT TCGGGATCCT GTTTGCCATC CTCTTGGTGC TGGTCTTTAT 000720
000721 CAAAAAGGTG GCCAAGAAGC CAACCAATAA GGCCCCCCAC CCCAAGCAGG AACCCCAGGA GATCAATTTT CCCGACGATC 000800
000801 TTCCTGGCTC CAACACTGCT GCTCCAGTGC AGGAGACTTT ACATGGATGC CAACCGGTCA CCCAGGAGGA TGGCAAAGAG 000880
000881 AGTCGCATCT CAGTGCAGGA GAGACAGTGA GGCTGCACCC ACCCAGGAGT GTGGCCACGT GGGCAAACAG GCAGTTGGCC 000960
000961 AGAGAGCCTG GTGCTGCTGC TGCTGTGGCG TGAGGGTGAG GGGCTGGCAC TGACTGGGCA TAGCTCCCCG CTTCTGCCTG 001040
001041 CACCCCTGCA GTTTGAGACA GGAGACCTGG CACTGGATGC AGAAACAGTT CACCTTGAAG AACCTCTCAC TTCACCCTGG 001120
001121 AGCCCATCCA GTCTCCCAAC TTGTATTAAA GACAGAGGCA GAAGTTTGGT GGTGGTGGTG TTGGGGTATG GTTTAGTAAT 001200
001201 ATCCACCAGA CCTTCCGATC CAGCAGTTTG GTGCCCAGAG AGGCATCATG GTGGCTTCCC tgcgcccagg aagccatata 001280
001281 cacagatgcc cattgcagca ttgtttgtga tagtgaacaa ctggaagctg cttaactgtc catcagcagg agactggcta 001360
001361 aataaaatta gaatatattt atacaacaga atctcaaaaa cactgttgag taaggaaaaa aaggcatgct gctgaatgat 001440
001441 gggtatggaa ctttttaaaa aagtacatgc ttttatgtat gtatattgcc tatggatata tgtataaata caatatgcat 001520
001521 catatattga tataacaagg gttctggaag ggtacacaga aaacccacag ctcgaagagt ggtgacgtct ggggtgggga 001600
001601 agaagggtct gggggagggt tggttaaagg gagatttggc tttcccataa tgcttcatca tttttCCCAA AAGGAGAGTG 001680
001681 AATTCACATA ATGCTTATGT AATTAAAAAA TCATCAAACA TGTAAAAAGA AAA
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Predicted Small Protein

Name NONHSAT080004_smProtein_842:1012
Length 57
Molecular weight 6261.1671
Aromaticity 0.0357142857143
Instability index 79.5892857143
Isoelectric point 9.54644775391
Runs 7
Runs residual 0.0282982045277
Runs probability 0.0394680394681
Amino acid sequence MDANRSPRRMAKRVASQCRRDSEAAPTQECGHVGKQAVGQRAWCCCCCGVRVRGWH
Secondary structure LLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLEEEEEEL
PRMN -
PiMo -