NONHSAT080009
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080009 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1263 nt |
Genomic location |
chr20+:44834053..44835850 |
Exon number |
2 |
Exons |
44834053..44834878,44835414..44835850 |
Genome context |
|
Sequence |
000001 cagagggggt gcattgactt gcccaagact ccacaactga gctgggattt gaacccaggt ctcctctgat ttcaaagccc 000080
000081 ttgcagtttc tgctgcacca cactgtGGAG TGCTGGGTGG AGAAAGGAAG TGTTCGCTTC CTCTGCTGCA GTGTGGACTA 000160 000161 GCTGTTTTTG ATGATCAAAG GAGACTCACA ATGGGGCTAG GTAGGAACGT GGCTGGGCTG ATAAATGGCC AGTCTATCTG 000240 000241 CAAACCTGCC TAACTGAGAG GTGGGCCCAT CTGAGCACTT TCCTGCCTCC TTCTCAAGCC TTCTAAGGCT TCCCACTGCC 000320 000321 TAGAGGATAA AGTCCCACTT CTTCATGTGG CATTCAATGT CCTTCGCAGC CTGTCTCCAA GTGCTCCCTT GTCCCTTGTC 000400 000401 GTGAGCTTGT CCAGCTGGTC TCGCTGCTCC TGAACTTAAC CTCCTGGCTC CATGATTCTG TCCCTGCCAT CTCTCCTCCC 000480 000481 CATCACTCCA ACCTGGGGCA CACTCTCCCC ATTCCAAGCC TTGTCCTCTT CGTCCCCTTG CAGGGGCCTT TTGGGGCAAA 000560 000561 CCTCTGTCAC TCCCCTTCCT GGTGCATAAA CTACTCACCC CTCCCTGGAG CTCCTCAAGC CCCTGCCTCA GCCCAAGCCC 000640 000641 ACTTGGACCT GGACCTGTCA CTGGATTCGT TCACACGGGC CAAGCTTTCC CACTGGCCCA TGTCTGAGGC CATCATCTCT 000720 000721 GTGGCCAGTG CACAGGGGAG GACGCTGCAC CAGTTTAGGA ACTGCACTAA CCACAAGGAG AGTAAGAAGC AGGagtgaaa 000800 000801 tggccaaagg ctggattcag gaagtggaga aggcaaactc cacgtgggca gggatcctgt tttatcatct ctgcttcctc 000880 000881 actgcacaga acagtgccgg gcacaACTCA ATGCGGAGTT GCTGCCTAAG CCTGTGACCC TGAGAACGCA GGTGCTGCCA 000960 000961 GAATGGAACC CTTAGAGCGA GCTGGACTCT GGCAGCACAC ATGGCCTGTG AGGACCCCTT CTCTGTCTCC CACAGACCCT 001040 001041 CAATGGCCTC CCATttccat ttttgtaccc cacagtctgg gagctccacc ccagttctgt ccttggctga gtcatcttgg 001120 001121 tgtccccagg cctggctcag ggcctggcat ggaggaggag ctgggtaaat gtttgtGGTG TTAAATTGGA CCAGTCTCCA 001200 001201 GCTCCTCACT GCCTCCACAT CTGAGGAGCC CCAGGGAAGG GGCCGGCAAA GAGAGATGAA AGA |
Predicted Small Protein
Name | NONHSAT080009_smProtein_962:1183 |
Length | 74 |
Molecular weight | 8124.2976 |
Aromaticity | 0.0958904109589 |
Instability index | 59.4123287671 |
Isoelectric point | 5.79217529297 |
Runs | 7 |
Runs residual | 0.0482545293858 |
Runs probability | 0.0434552199259 |
Amino acid sequence | MEPLERAGLWQHTWPVRTPSLSPTDPQWPPISIFVPHSLGAPPQFCPWLSHLGVPRPGSG PGMEEELGKCLWC |
Secondary structure | LLHHHHLLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLL LLHHHHHLLLLLL |
PRMN | - |
PiMo | - |