NONHSAT080088
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080088 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3071 nt |
Genomic location |
chr20+:46427797..46432779 |
Exon number |
3 |
Exons |
46427797..46428157,46428624..46428783,46430230..46432779 |
Genome context |
|
Sequence |
000001 GTCTGACCTT GAGGGTGGGT GGGACAGATG TCACTGATGG TTGATGCCTT AGTTTGGGTT GTCCCAGGTG CAGATTCCGA 000080
000081 GACAAGAATT TGAGAGCAAG TAGTTTATTT GAGAGGTGAC CTCAGGAAGC TCTGGCAGGG CTTTAGGAAG CGCAACAGGA 000160 000161 AAGGGAGGAG GCCAATTCAG GGCGTAGTAT TCAGCCAGCT GGTGCAGAGG ACAGCTGGAG TTCAGTCCCA TGGAGAAATC 000240 000241 ACACACAATA GAGGAATCCC AGGAGCGAGG GACAGGCGGT ATTTATACAC CAACTCCTAT GAGTTATTAC TTGGGGGTTG 000320 000321 TTGGAGGTGA GTGTTAATCC CCTGGCACCT CCCACCTGCC ATAAAGTGTT CAATGCCATC CCAGGCTGCC CTCCATGAGA 000400 000401 CAGGTGGCAG GCAATGCCTA AATCAAGGGG ACATAGTGCA CGCTCTGCCA TGGGCATCTC AGGCCTCTGC CCTCTGGGTT 000480 000481 CCAGCCCCTC TCTAACCTGG TTCTCACTTC TCCCTGTCCA CGAGCAAGGC GACCTCCAAG GAGAAACGGT GTCTGGGCGA 000560 000561 CCCTGAGAGC CTGAGATGTG GCCTGGGGGT TACCATGGAC GGAAGGGAAG TAGGGGGGTC AGGACGACTC ACGCTCTGGT 000640 000641 CCTTGTCACT AAAAGTCAGA GCAGCTGAAA CTCACCAAGC ATCACTCACA TCAGACACTG GTCTAAGCAC CTTACATGCA 000720 000721 TTCTCTATAT TTTTATTTAA CAAATACTTA CATCGAGCTT GCCGTGTGGA GGCACTGCTC TAGTTGATTT ACAAAACGAA 000800 000801 ACAAGAAGCG TCGAAAACAC ATCGAATCAA CAAAACACCA TCGTGAATTC TCGCAACTGC CCTGTGTGGG AGGCACTGCC 000880 000881 GCTACCTCCA TCTGCAGAGG GGTAGGGGAG CCTGGGAGCT GGTGGGCGGA GGGCCGGGTG GGGTGGAACT GGCATCTGCC 000960 000961 TCCAGGGCTG GGCTCCTCCC ATTGCTGATG CCTGGGTTTC ACTGTGCTCG TAAAAGCCAC GGGTCAATTA TGCTTATTAC 001040 001041 CTGTTCTGCA GGTGAGAAAA CGAGGCACAC AGGGGTGAGC AATTCGCTCA GCTTGAAAGT GGTAGAACCA GGACCCAGCC 001120 001121 CAGGCCATGG CTCGGGACCC ACTCTGTAAT CACTCACTGG GGGCCCCGCA GTAATGAGCT CTTTGAAGAA AGGTGAGTCA 001200 001201 CTGACCTTGG CTGTGCCTCA GTTTCTTCAT TTGCCAAGTG GGGCTCTGCT GCCCCTGCCT CTGCCCTGCT GACTTGCAAG 001280 001281 AAGAGTGAAC GAATGGAATT GGATGAAGGC TTCCGGAAAC TTCCATCAGG AAAGCGCCCT GGCCTGGGAG AAAGCCGGTC 001360 001361 CTGGCCGGCT TTGCCTGCAA TGCCCTCAGT GGCCAGTCAC GTCCCCTCCT TGGCCTGCAG GTTCCTCACT GGAGCGGGGG 001440 001441 TGGCCCGAGA TGAACCCTCA GATGCACCAA GCCCCACACC TTGATTGTCC AGCTCTGTCC TGATGGACAG GGGAGCTGCC 001520 001521 TGCGGTGACT GTCCAGGAAC TGGGTGTCTG GAGACGGGCA GACCCAACCA TTTGAGGCTC GTTCTAGGAA GTGTGTTCAG 001600 001601 TGTGGCCAAG CTTGGTGACT CTGGGGCTTC TGGAATGGTT CCCATGCCAG AGAATTACAA AAAGATCCTT TGTACTGAGA 001680 001681 AGAGAAAGTA CAACTTATTC TCTTAGGGAC ACCTTCCTGG AGGGACACCA GACAAGAAGT CCAGGCCCTG GAATCAGATG 001760 001761 CCCTGGGCCA GGCAGCTTCT GTCTCCCCGA GTTCTCTGCG GAGGCAGCAC TCTCAGAAGA TTCCACGGTT TAATCACACT 001840 001841 CCAGCTCTTT TCAGAGCACC TTCTACGTGC CAGGCATGCT CTAGGCACCA GCGATGCAAC TGTGGATGAA AAAGACCAAG 001920 001921 GCCCTGTTCT CGGGGAGCTG GCGGGGTGGG AGGGGCAGTG AAAAACAAGT ACAGCCTGCC CCCGCAAGTA CAGTCACATA 002000 002001 GACATATGTG TGTATGTGTG CACATATACT TGAAATATCA AGTGGCTGGA GGGTTTACTT TAGACTGGGG GATGTGGAAG 002080 002081 TCCTCTCTGA GATGCGCCCC CTTTGATCAG AGGCCTGAAG GAATTAAATG AGTCTTCCAT GTGCACATCC AGGGGAGGAA 002160 002161 GTTTCCAGGC AGATGGACCC GCATGTGCAA AGGCCCTGTG GTGGAGTGTG CTGGGGGTGT TCTAGGAGGG TCAGCATGGA 002240 002241 GGGAACAAGG AGAAGAGCTC GAGCTGAGGT TATGGAGGGC CTCATGGGTC ATGGCAAAGA CATCTGGGTC ATATTCTGAG 002320 002321 ATAGATGGGG TGGGGTTTGG CACAGAGGAC TTTATGTATT TTGCCTTAAT ATTTTAAAAG GATCCCTCTG GCTGCCTGTG 002400 002401 AGCATGGATT GTGCAGGATC AATGCAGGGA GTCGATGTAG GGAGACCAGC AAGGAGGTGA TTGCCACAGT CAAGAAGGGA 002480 002481 TGATGGACGC CCAGGCCTCC GTATTCGGAG CGGTGTGGCC AGGCGATAGC ATGGTAGCCA TCATCACAAG CTAAAGCCAG 002560 002561 CAGGTTTGGT AGATGGTTGG GATATGGAGG AATAAGAGAA AGAGAAGGGT TATGCTGACT CTAAGATTTG GCCTAATCGC 002640 002641 CAGAAGGTTG TAGGTGCCTT TTTTTTTTTT TTTTTAAATG GGAGTGACCG GCTTGGAGGG AAGATAAGGG GCATCAGAAA 002720 002721 CCTGCACAAA CCTGCAGGAG TGTGCACTGT GTGACCCTGA TGCCCAAAGG TGACCCTGGG GCCAAGCAGT GTCTCCACCC 002800 002801 TTAGTCTCTG GGGCCCCTGC CCACCTGCAG AAGGGACCCT AAACACTAAC CTTTGATTTA AATCCAAAAC ATTCTTCCCT 002880 002881 AACGTAAAGT TGCCCAGGGC AGTATTGGTT TCTCTTTTAA AGACGCCACC TGGATTCTAT TCTAATGGTG GGGGTGCATA 002960 002961 TCTAGAAAGG ATGGGCAGCC CCTGCGGGGA AAGAATGAAT GGGGCCAGGT GCAGTGGCTC ACACCTGTAA TCCCAGCACT 003040 003041 TTGGGAGGCC GAGGTGGGTG GATCACTTGA G |
Predicted Small Protein
Name | NONHSAT080088_smProtein_1757:1960 |
Length | 68 |
Molecular weight | 7394.3731 |
Aromaticity | 0.0597014925373 |
Instability index | 46.2059701493 |
Isoelectric point | 6.81732177734 |
Runs | 9 |
Runs residual | 0.00898648120653 |
Runs probability | 0.0222281104634 |
Amino acid sequence | MPWARQLLSPRVLCGGSTLRRFHGLITLQLFSEHLLRARHALGTSDATVDEKDQGPVLGE LAGWEGQ |
Secondary structure | LLHHHHLLLLLEEELLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLHH HLLLLLL |
PRMN | - |
PiMo | - |