NONHSAT080088

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Basic Information

Transcript ID

NONHSAT080088

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3071 nt

Genomic location

chr20+:46427797..46432779

Exon number

3

Exons

46427797..46428157,46428624..46428783,46430230..46432779

Genome context

Sequence
000001 GTCTGACCTT GAGGGTGGGT GGGACAGATG TCACTGATGG TTGATGCCTT AGTTTGGGTT GTCCCAGGTG CAGATTCCGA 000080
000081 GACAAGAATT TGAGAGCAAG TAGTTTATTT GAGAGGTGAC CTCAGGAAGC TCTGGCAGGG CTTTAGGAAG CGCAACAGGA 000160
000161 AAGGGAGGAG GCCAATTCAG GGCGTAGTAT TCAGCCAGCT GGTGCAGAGG ACAGCTGGAG TTCAGTCCCA TGGAGAAATC 000240
000241 ACACACAATA GAGGAATCCC AGGAGCGAGG GACAGGCGGT ATTTATACAC CAACTCCTAT GAGTTATTAC TTGGGGGTTG 000320
000321 TTGGAGGTGA GTGTTAATCC CCTGGCACCT CCCACCTGCC ATAAAGTGTT CAATGCCATC CCAGGCTGCC CTCCATGAGA 000400
000401 CAGGTGGCAG GCAATGCCTA AATCAAGGGG ACATAGTGCA CGCTCTGCCA TGGGCATCTC AGGCCTCTGC CCTCTGGGTT 000480
000481 CCAGCCCCTC TCTAACCTGG TTCTCACTTC TCCCTGTCCA CGAGCAAGGC GACCTCCAAG GAGAAACGGT GTCTGGGCGA 000560
000561 CCCTGAGAGC CTGAGATGTG GCCTGGGGGT TACCATGGAC GGAAGGGAAG TAGGGGGGTC AGGACGACTC ACGCTCTGGT 000640
000641 CCTTGTCACT AAAAGTCAGA GCAGCTGAAA CTCACCAAGC ATCACTCACA TCAGACACTG GTCTAAGCAC CTTACATGCA 000720
000721 TTCTCTATAT TTTTATTTAA CAAATACTTA CATCGAGCTT GCCGTGTGGA GGCACTGCTC TAGTTGATTT ACAAAACGAA 000800
000801 ACAAGAAGCG TCGAAAACAC ATCGAATCAA CAAAACACCA TCGTGAATTC TCGCAACTGC CCTGTGTGGG AGGCACTGCC 000880
000881 GCTACCTCCA TCTGCAGAGG GGTAGGGGAG CCTGGGAGCT GGTGGGCGGA GGGCCGGGTG GGGTGGAACT GGCATCTGCC 000960
000961 TCCAGGGCTG GGCTCCTCCC ATTGCTGATG CCTGGGTTTC ACTGTGCTCG TAAAAGCCAC GGGTCAATTA TGCTTATTAC 001040
001041 CTGTTCTGCA GGTGAGAAAA CGAGGCACAC AGGGGTGAGC AATTCGCTCA GCTTGAAAGT GGTAGAACCA GGACCCAGCC 001120
001121 CAGGCCATGG CTCGGGACCC ACTCTGTAAT CACTCACTGG GGGCCCCGCA GTAATGAGCT CTTTGAAGAA AGGTGAGTCA 001200
001201 CTGACCTTGG CTGTGCCTCA GTTTCTTCAT TTGCCAAGTG GGGCTCTGCT GCCCCTGCCT CTGCCCTGCT GACTTGCAAG 001280
001281 AAGAGTGAAC GAATGGAATT GGATGAAGGC TTCCGGAAAC TTCCATCAGG AAAGCGCCCT GGCCTGGGAG AAAGCCGGTC 001360
001361 CTGGCCGGCT TTGCCTGCAA TGCCCTCAGT GGCCAGTCAC GTCCCCTCCT TGGCCTGCAG GTTCCTCACT GGAGCGGGGG 001440
001441 TGGCCCGAGA TGAACCCTCA GATGCACCAA GCCCCACACC TTGATTGTCC AGCTCTGTCC TGATGGACAG GGGAGCTGCC 001520
001521 TGCGGTGACT GTCCAGGAAC TGGGTGTCTG GAGACGGGCA GACCCAACCA TTTGAGGCTC GTTCTAGGAA GTGTGTTCAG 001600
001601 TGTGGCCAAG CTTGGTGACT CTGGGGCTTC TGGAATGGTT CCCATGCCAG AGAATTACAA AAAGATCCTT TGTACTGAGA 001680
001681 AGAGAAAGTA CAACTTATTC TCTTAGGGAC ACCTTCCTGG AGGGACACCA GACAAGAAGT CCAGGCCCTG GAATCAGATG 001760
001761 CCCTGGGCCA GGCAGCTTCT GTCTCCCCGA GTTCTCTGCG GAGGCAGCAC TCTCAGAAGA TTCCACGGTT TAATCACACT 001840
001841 CCAGCTCTTT TCAGAGCACC TTCTACGTGC CAGGCATGCT CTAGGCACCA GCGATGCAAC TGTGGATGAA AAAGACCAAG 001920
001921 GCCCTGTTCT CGGGGAGCTG GCGGGGTGGG AGGGGCAGTG AAAAACAAGT ACAGCCTGCC CCCGCAAGTA CAGTCACATA 002000
002001 GACATATGTG TGTATGTGTG CACATATACT TGAAATATCA AGTGGCTGGA GGGTTTACTT TAGACTGGGG GATGTGGAAG 002080
002081 TCCTCTCTGA GATGCGCCCC CTTTGATCAG AGGCCTGAAG GAATTAAATG AGTCTTCCAT GTGCACATCC AGGGGAGGAA 002160
002161 GTTTCCAGGC AGATGGACCC GCATGTGCAA AGGCCCTGTG GTGGAGTGTG CTGGGGGTGT TCTAGGAGGG TCAGCATGGA 002240
002241 GGGAACAAGG AGAAGAGCTC GAGCTGAGGT TATGGAGGGC CTCATGGGTC ATGGCAAAGA CATCTGGGTC ATATTCTGAG 002320
002321 ATAGATGGGG TGGGGTTTGG CACAGAGGAC TTTATGTATT TTGCCTTAAT ATTTTAAAAG GATCCCTCTG GCTGCCTGTG 002400
002401 AGCATGGATT GTGCAGGATC AATGCAGGGA GTCGATGTAG GGAGACCAGC AAGGAGGTGA TTGCCACAGT CAAGAAGGGA 002480
002481 TGATGGACGC CCAGGCCTCC GTATTCGGAG CGGTGTGGCC AGGCGATAGC ATGGTAGCCA TCATCACAAG CTAAAGCCAG 002560
002561 CAGGTTTGGT AGATGGTTGG GATATGGAGG AATAAGAGAA AGAGAAGGGT TATGCTGACT CTAAGATTTG GCCTAATCGC 002640
002641 CAGAAGGTTG TAGGTGCCTT TTTTTTTTTT TTTTTAAATG GGAGTGACCG GCTTGGAGGG AAGATAAGGG GCATCAGAAA 002720
002721 CCTGCACAAA CCTGCAGGAG TGTGCACTGT GTGACCCTGA TGCCCAAAGG TGACCCTGGG GCCAAGCAGT GTCTCCACCC 002800
002801 TTAGTCTCTG GGGCCCCTGC CCACCTGCAG AAGGGACCCT AAACACTAAC CTTTGATTTA AATCCAAAAC ATTCTTCCCT 002880
002881 AACGTAAAGT TGCCCAGGGC AGTATTGGTT TCTCTTTTAA AGACGCCACC TGGATTCTAT TCTAATGGTG GGGGTGCATA 002960
002961 TCTAGAAAGG ATGGGCAGCC CCTGCGGGGA AAGAATGAAT GGGGCCAGGT GCAGTGGCTC ACACCTGTAA TCCCAGCACT 003040
003041 TTGGGAGGCC GAGGTGGGTG GATCACTTGA G
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Predicted Small Protein

Name NONHSAT080088_smProtein_1757:1960
Length 68
Molecular weight 7394.3731
Aromaticity 0.0597014925373
Instability index 46.2059701493
Isoelectric point 6.81732177734
Runs 9
Runs residual 0.00898648120653
Runs probability 0.0222281104634
Amino acid sequence MPWARQLLSPRVLCGGSTLRRFHGLITLQLFSEHLLRARHALGTSDATVDEKDQGPVLGE
LAGWEGQ
Secondary structure LLHHHHLLLLLEEELLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLHH
HLLLLLL
PRMN -
PiMo -