NONHSAT080291
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080291 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3292 nt |
Genomic location |
chr20+:48909297..48931304 |
Exon number |
3 |
Exons |
48909297..48909367,48914693..48914950,48928342..48931304 |
Genome context |
|
Sequence |
000001 CTTTTGGGCA CAAGGCAGGG CCCAGAGGGG TGCGTGGGGG CCGCAGCCCA GCCCCCAAGC CCCGCCAGCG Gctttactgg 000080
000081 ggtgtaacaa acacacgata aactgcgcat attccagtgt tcatgtggat gagtttggac atatgcacac acttccgaaa 000160 000161 ccaccagcac aatcaagaca gcagacatat ccatcgcccc caagggtgtc cttgtgtctt tttgtcattc atccctcccg 000240 000241 gccgccccat ccacactccc atcgcctgcc gactgtggct gatctgcttt ctgcggctgt ggattagttt gcgttctcta 000320 000321 caattttctG AAGCACCAGT TAGCCCAGAT GCTTCTCATC TTTGGAGTTG AGCTGCAGGC TGGAGACCTG GAAGGCCCTC 000400 000401 GCAGCGCCTG CTCCCATCCT CTCACCTCAC GAAAGCGCag gaatgtgggt ttggagccaa tgaaaagtac tggaatctgg 000480 000481 ctctgctctg tgaccctgga caagtcactg cccctctctg ggcttcagtt tcctccttgg taacacagaa tgattatacc 000560 000561 taccccttgg gtttgttgAC CTGAATCTAC CCCTCAGTCA TTGCCTTTCC TTCTTgctgc agccacactg gccccttgac 000640 000641 agttccttga acacaacaag ccctttccca cctcagggcc tttgcatgtg cagtgccaga tgcctggaat gtccttcctt 000720 000721 ccaatctccc catggccggc tcattctcat ctttcttggc tcaaatgtta cctccccaac ctagacagca ccgctgccac 000800 000801 ctcttcaccc cgtcttactc ttcttcaagc acttctggag gtatcttgct atttatcttg tttatatctt tttcagctcc 000880 000881 atgagggcag gggattttgt ctgtttcatt cacaatgtgt tcccagagct cagcacagtg tcaggcacac actaggtgag 000960 000961 taagaaacaa ttgctTCCTC TACCTCTTCC CCTGctagcc ccaagttcag ctaactggct gtgtgaccct ggggattgct 001040 001041 tttcacctct ctggtccctt attctccctt gtggacaaag gatggcctgg gcatgagttt cttcaaggac tcGGGTAGCA 001120 001121 GTGAAATCCC TGGGACCCTA GCCTCAGTAC CTCCCCAGGC AATGGGGTAG AGAGCAAGAA GGCAGGTGAG CAAGGACCAG 001200 001201 CCTCCGCCAC GCAGACACCC TCTTTCCGGC TTCTCTGTCC TCCTACTTTG CCCTGGGTTT GTGGACTTAC TCTGGGCAGA 001280 001281 TCTCCACGAC CAACCACCCC CTCCCTTGGC ATGTCTGTCA GCACCCTTGG GGGAAAGAAT TTGGAAAGGG GAGGGAGAAA 001360 001361 AAGAAAGCAG GGTGCGAGGG GCTGGTTCCC ACACCTGTGT AAATAATTTG TCATCTTAAA ATGCTCAAGT ATGCTCACCT 001440 001441 TTAATGCCTG GTTCTTGGGC TTATTTTCCT TGGCAAGGCC CCCACGGGAG TGGAATTTCG GCCAAAGGGA GCCCAGTTGT 001520 001521 CATCTTCTAA ACATGTTCCC AGGCCGGGGG CCGGGGAGGG CTCTGGCTGA TGCTCCACTT CCGTCCCCAG AAGTGCTGGA 001600 001601 ACGTTCCTGG GATCTAGGGA GCTGACTCCA GTCCTGGAAG CTGTCCCAGA ATTCTGGAAT GTTGGAATTC AAACGGCCTc 001680 001681 ctgcccattt tccggaggag gaacataaga cccagagagg ggaaggggtt ggcctgaggt catacaatgt gcagagacga 001760 001761 gctagagttt gCTGGGAGAA GGTGCGGGTG TGTGGACAAG Tcagcatcta tctcccattt tcaggtaaca gcacctcgac 001840 001841 ttcctactga agaaccccct cttccctttt ctcagtccat gaggctgggg gtgcccagag gcctctgtct ccaggggtgg 001920 001921 acatgtgacc gggtcttgct ctagtgattg gtccagggat gggcacatga ctgagcctgc ccaatgaaac ttgatcttgg 002000 002001 gacttcaggg ttggccatga tttgtgaagg agatgccatt ttccattgga tggacagtga gcaagtgaac gcttagagaa 002080 002081 gaagaggaca aaacaaggga aaagcctgcc tgacaggaag cagcacagag ctggacaggc tttgaactcc tggatcccac 002160 002161 tgtacctgaa attaggcacc ttcaactttc tagttatgtg agccactgtc tttcccattt ttggctgaaa acagttggga 002240 002241 ctggctttct gtcccttgca tacagaaggt gctgactgaC CCCTGCCCCA TGGAAGAAGA TACTCCAGGC AGAGGAAATA 002320 002321 GTGTGTATAG ACACCCCTAA GCGAATGCCA AGCGGGGCAC TCATGTACCA AGAAGAAgga ggaggaggca cctgggagct 002400 002401 gagcttaaga gttagtcggg tggtcaaggt gggagaaggg ggtatcttta gcagagggaa caaccattgc aaaagcttgg 002480 002481 aggGGTGACT AGttagtgaa gatcaactgt gtgctgagct cgtgttgggt ggcaagggac acagACGAAA AGGGCACGGT 002560 002561 GGAACCCAGC TACTTCTCAC CTGCTCCAGC GCAGTGCAGG CTTGTCTGCT TTTGGAGCCG AGCCTGGACA CCTCCGTGTC 002640 002641 CTTCCCCCGG CAGAGTGCTG CCAGCACGCT GTCTCAGACT CTCCAGCATC TCCTGGTTga tgtgcatcat ggggaccaca 002720 002721 caagattatt ttataggctg cacaggcaaa gcataaaatc acctcgggtc acatagcgag agttattctc tctgcaaatt 002800 002801 ctttacagtc tttcctttat atccagaaga gtctctgtgt ggtgctaact tgcctcgaag accaaataat tgctagtctc 002880 002881 cctttgtgaa aaggagagca ggtgtcaggc tcattcatgt ctcaggcaca caattgtatc tagctagact ttTCAAAATG 002960 002961 TCCTATAGAG CTGCAGCACA TATGAATGAG GTGTCCAGCT GGTCCCAAAC Ctgtaatcgg caccccagtg agcagactgg 003040 003041 acatccccac ccccacagct gccctttctc ccctccactc atgttccctc tagggccacc acgatcccga cttgtatcac 003120 003121 cacagatgag tttcacatgt ttttgaattt tacatcttat ctgttttctg ttcctataca agtttgcctt ttttgaattc 003200 003201 catataagtg ggattctaca atgtgttatc tcaatttgag tctgtttttt ttttcctgct cagcatgatg tttttgagat 003280 003281 gcatatatgc gg |
Predicted Small Protein
Name | NONHSAT080291_smProtein_122:370 |
Length | 83 |
Molecular weight | 9644.1486 |
Aromaticity | 0.109756097561 |
Instability index | 90.8304878049 |
Isoelectric point | 8.83099365234 |
Runs | 11 |
Runs residual | 0.00175535846268 |
Runs probability | 0.0326155032037 |
Amino acid sequence | MWMSLDICTHFRNHQHNQDSRHIHRPQGCPCVFLSFIPPGRPIHTPIACRLWLICFLRLW ISLRSLQFSEAPVSPDASHLWS |
Secondary structure | LEEELLHHHHLLLLLLLLLLLLEELLLLLLEEEEEELLLLLLLLLHHHHHHHHHHHHHHH HHHHHLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTT TTTooooooooooooooooooo |