NONHSAT080291

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT080291

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3292 nt

Genomic location

chr20+:48909297..48931304

Exon number

3

Exons

48909297..48909367,48914693..48914950,48928342..48931304

Genome context

Sequence
000001 CTTTTGGGCA CAAGGCAGGG CCCAGAGGGG TGCGTGGGGG CCGCAGCCCA GCCCCCAAGC CCCGCCAGCG Gctttactgg 000080
000081 ggtgtaacaa acacacgata aactgcgcat attccagtgt tcatgtggat gagtttggac atatgcacac acttccgaaa 000160
000161 ccaccagcac aatcaagaca gcagacatat ccatcgcccc caagggtgtc cttgtgtctt tttgtcattc atccctcccg 000240
000241 gccgccccat ccacactccc atcgcctgcc gactgtggct gatctgcttt ctgcggctgt ggattagttt gcgttctcta 000320
000321 caattttctG AAGCACCAGT TAGCCCAGAT GCTTCTCATC TTTGGAGTTG AGCTGCAGGC TGGAGACCTG GAAGGCCCTC 000400
000401 GCAGCGCCTG CTCCCATCCT CTCACCTCAC GAAAGCGCag gaatgtgggt ttggagccaa tgaaaagtac tggaatctgg 000480
000481 ctctgctctg tgaccctgga caagtcactg cccctctctg ggcttcagtt tcctccttgg taacacagaa tgattatacc 000560
000561 taccccttgg gtttgttgAC CTGAATCTAC CCCTCAGTCA TTGCCTTTCC TTCTTgctgc agccacactg gccccttgac 000640
000641 agttccttga acacaacaag ccctttccca cctcagggcc tttgcatgtg cagtgccaga tgcctggaat gtccttcctt 000720
000721 ccaatctccc catggccggc tcattctcat ctttcttggc tcaaatgtta cctccccaac ctagacagca ccgctgccac 000800
000801 ctcttcaccc cgtcttactc ttcttcaagc acttctggag gtatcttgct atttatcttg tttatatctt tttcagctcc 000880
000881 atgagggcag gggattttgt ctgtttcatt cacaatgtgt tcccagagct cagcacagtg tcaggcacac actaggtgag 000960
000961 taagaaacaa ttgctTCCTC TACCTCTTCC CCTGctagcc ccaagttcag ctaactggct gtgtgaccct ggggattgct 001040
001041 tttcacctct ctggtccctt attctccctt gtggacaaag gatggcctgg gcatgagttt cttcaaggac tcGGGTAGCA 001120
001121 GTGAAATCCC TGGGACCCTA GCCTCAGTAC CTCCCCAGGC AATGGGGTAG AGAGCAAGAA GGCAGGTGAG CAAGGACCAG 001200
001201 CCTCCGCCAC GCAGACACCC TCTTTCCGGC TTCTCTGTCC TCCTACTTTG CCCTGGGTTT GTGGACTTAC TCTGGGCAGA 001280
001281 TCTCCACGAC CAACCACCCC CTCCCTTGGC ATGTCTGTCA GCACCCTTGG GGGAAAGAAT TTGGAAAGGG GAGGGAGAAA 001360
001361 AAGAAAGCAG GGTGCGAGGG GCTGGTTCCC ACACCTGTGT AAATAATTTG TCATCTTAAA ATGCTCAAGT ATGCTCACCT 001440
001441 TTAATGCCTG GTTCTTGGGC TTATTTTCCT TGGCAAGGCC CCCACGGGAG TGGAATTTCG GCCAAAGGGA GCCCAGTTGT 001520
001521 CATCTTCTAA ACATGTTCCC AGGCCGGGGG CCGGGGAGGG CTCTGGCTGA TGCTCCACTT CCGTCCCCAG AAGTGCTGGA 001600
001601 ACGTTCCTGG GATCTAGGGA GCTGACTCCA GTCCTGGAAG CTGTCCCAGA ATTCTGGAAT GTTGGAATTC AAACGGCCTc 001680
001681 ctgcccattt tccggaggag gaacataaga cccagagagg ggaaggggtt ggcctgaggt catacaatgt gcagagacga 001760
001761 gctagagttt gCTGGGAGAA GGTGCGGGTG TGTGGACAAG Tcagcatcta tctcccattt tcaggtaaca gcacctcgac 001840
001841 ttcctactga agaaccccct cttccctttt ctcagtccat gaggctgggg gtgcccagag gcctctgtct ccaggggtgg 001920
001921 acatgtgacc gggtcttgct ctagtgattg gtccagggat gggcacatga ctgagcctgc ccaatgaaac ttgatcttgg 002000
002001 gacttcaggg ttggccatga tttgtgaagg agatgccatt ttccattgga tggacagtga gcaagtgaac gcttagagaa 002080
002081 gaagaggaca aaacaaggga aaagcctgcc tgacaggaag cagcacagag ctggacaggc tttgaactcc tggatcccac 002160
002161 tgtacctgaa attaggcacc ttcaactttc tagttatgtg agccactgtc tttcccattt ttggctgaaa acagttggga 002240
002241 ctggctttct gtcccttgca tacagaaggt gctgactgaC CCCTGCCCCA TGGAAGAAGA TACTCCAGGC AGAGGAAATA 002320
002321 GTGTGTATAG ACACCCCTAA GCGAATGCCA AGCGGGGCAC TCATGTACCA AGAAGAAgga ggaggaggca cctgggagct 002400
002401 gagcttaaga gttagtcggg tggtcaaggt gggagaaggg ggtatcttta gcagagggaa caaccattgc aaaagcttgg 002480
002481 aggGGTGACT AGttagtgaa gatcaactgt gtgctgagct cgtgttgggt ggcaagggac acagACGAAA AGGGCACGGT 002560
002561 GGAACCCAGC TACTTCTCAC CTGCTCCAGC GCAGTGCAGG CTTGTCTGCT TTTGGAGCCG AGCCTGGACA CCTCCGTGTC 002640
002641 CTTCCCCCGG CAGAGTGCTG CCAGCACGCT GTCTCAGACT CTCCAGCATC TCCTGGTTga tgtgcatcat ggggaccaca 002720
002721 caagattatt ttataggctg cacaggcaaa gcataaaatc acctcgggtc acatagcgag agttattctc tctgcaaatt 002800
002801 ctttacagtc tttcctttat atccagaaga gtctctgtgt ggtgctaact tgcctcgaag accaaataat tgctagtctc 002880
002881 cctttgtgaa aaggagagca ggtgtcaggc tcattcatgt ctcaggcaca caattgtatc tagctagact ttTCAAAATG 002960
002961 TCCTATAGAG CTGCAGCACA TATGAATGAG GTGTCCAGCT GGTCCCAAAC Ctgtaatcgg caccccagtg agcagactgg 003040
003041 acatccccac ccccacagct gccctttctc ccctccactc atgttccctc tagggccacc acgatcccga cttgtatcac 003120
003121 cacagatgag tttcacatgt ttttgaattt tacatcttat ctgttttctg ttcctataca agtttgcctt ttttgaattc 003200
003201 catataagtg ggattctaca atgtgttatc tcaatttgag tctgtttttt ttttcctgct cagcatgatg tttttgagat 003280
003281 gcatatatgc gg
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Predicted Small Protein

Name NONHSAT080291_smProtein_122:370
Length 83
Molecular weight 9644.1486
Aromaticity 0.109756097561
Instability index 90.8304878049
Isoelectric point 8.83099365234
Runs 11
Runs residual 0.00175535846268
Runs probability 0.0326155032037
Amino acid sequence MWMSLDICTHFRNHQHNQDSRHIHRPQGCPCVFLSFIPPGRPIHTPIACRLWLICFLRLW
ISLRSLQFSEAPVSPDASHLWS
Secondary structure LEEELLHHHHLLLLLLLLLLLLEELLLLLLEEEEEELLLLLLLLLHHHHHHHHHHHHHHH
HHHHHLLLLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHH
HHHLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTT
TTTooooooooooooooooooo