NONHSAT080408
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080408 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
932 nt |
Genomic location |
chr20+:52469245..52470254 |
Exon number |
2 |
Exons |
52469245..52470170,52470249..52470254 |
Genome context |
|
Sequence |
000001 cggcctccca aagtactggg attacagatg taagccacca cgcccggcAA TTTTTACAAT Ttctaattca accctgtcat 000080
000081 ttgtcagaag gagacagcaa gacagagaaa ggaagtgctt ttcctaagat catctgaata gaaggtgcaa agtgtggctg 000160 000161 gaatccagag atgccacctc ctgatccagc tctttccttt cttcctctct ATTCATTATT GATTGACTAT CTGGGTTTGT 000240 000241 ATttgctgtg tcacaagtta tctaaacatt tagcatctta taataagaca tatttattgt ctcatagttt ctgtttgtca 000320 000321 gaatcagccc ttgcttcagg gtctcagaca aatcggcatt caagatgtca gcctatgctg ggatttcatg taaagactct 000400 000401 acatgggaag aagctgtgtc caggctcagg cggttattgg gaggattcag ttccctgagg gctgttagat tgaggacctg 000480 000481 agatcttttc tcactattgg tcagaggcca ccctccattc cttgccacct ggggcattcc agatggcaac ttacttcatc 000560 000561 gaagtgtgca agctgagaag gccacagaga gagtctgcta gcaagacgaa agtcacaatc ttttgcaacc caatcgtgga 000640 000641 aatgacatcc catccccttt gctctattct atttgttagg aagtcactag gtccagccca cactcaaggg cctacactac 000720 000721 agggacatgg ggatagggtg gggaccatgg ggctgggcta gaattctgcc taccacaAGG CCTTTTTTTT GAAAATGGAA 000800 000801 AATTCTCAGT TGTGCTTGAT CTTTCTCTTC TAAACCAGGA AACCACTTTT CATGGGAGAG GTCAGGGATC TATTAAGACA 000880 000881 GAAACAAgag gggaggggag gggaggggag gggaagggag gagggagaag ga |
Predicted Small Protein
Name | NONHSAT080408_smProtein_170:457 |
Length | 96 |
Molecular weight | 10536.1095 |
Aromaticity | 0.105263157895 |
Instability index | 44.6221052632 |
Isoelectric point | 8.73541259766 |
Runs | 13 |
Runs residual | 0.00779113137174 |
Runs probability | 0.0421371597843 |
Amino acid sequence | MPPPDPALSFLPLYSLLIDYLGLYLLCHKLSKHLASYNKTYLLSHSFCLSESALASGSQT NRHSRCQPMLGFHVKTLHGKKLCPGSGGYWEDSVP |
Secondary structure | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLHHHEELLLLLLLHHHHHLLLLL LLLLLLLLHHHHEELLLLLLLLLLLLLLEEELLLL |
PRMN | - |
PiMo | - |