NONHSAT080436
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080436 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
698 nt |
Genomic location |
chr20+:54586026..54604589 |
Exon number |
6 |
Exons |
54586026..54586075,54586205..54586413,54587854..54588016,54588664..54588798,54603526..54603593,54604517..54604589 |
Genome context |
|
Sequence |
000001 GTTCACGCCA TTCTCCTGCC TCAGTCTCCC AAGTAGCTGG GACTACAGGT ACAGGCGTGA GCCACCGCGC CCAGCCCACA 000080
000081 TTTAAAATAT TTTTTAAAAA AGAAAGGGTT TCTGAGTAGA TCATCCAATA GTGATCTATC ACATTCACAC TTCTTCTCCA 000160 000161 TAGTTTACTC TTAATTAAAG TTTAAAAAGT GGCATTGATT GAACAGCAAT CTCCCTTTTT TGTTATACTG ATCCGACTCT 000240 000241 AAAAATCACT TACTCCAAGG TGTTTAAAGG AAAGTATTTT CCTACAACAT GACCACTAAA ACAAGCCAAC CACTTAATCT 000320 000321 GATGTTCAGC TGAAGAAACA GCAATCTGTT TTGACACTGA AAGGAAAACT GGCTGCGGTG AGCTCTCTGA GAGCTGGTGT 000400 000401 ACCAGACACC ATGGTGAGAA CTATTCTCCT ACGCTCTTCT CATGGTTTTA TGTGCCTTTC ATTCCTAGTG GTTACCAGAG 000480 000481 TTGAGATGTT ACATTTATTT GTCTTATTTG ACTGAAAGAA TCTTCCCAGC CAATAATAAG CTCCATGAGG GCAGAGGGAG 000560 000561 AGACAGACAG ACAACCTAAT GTTTTGCTAA TTCTTCCCTA AAATTGGGTT TTTAAGTATC TACTGACTAT TGCTTATGCA 000640 000641 TCTAAGGGTC AGCTTGGAAG TTTGGTCTGT AATGTGCTTC ATGACACTTC TGAGATCA |
Predicted Small Protein
Name | NONHSAT080436_smProtein_410:514 |
Length | 35 |
Molecular weight | 4011.8853 |
Aromaticity | 0.117647058824 |
Instability index | 43.3705882353 |
Isoelectric point | 8.04559326172 |
Runs | 7 |
Runs residual | 0.0197319434103 |
Runs probability | 0.0544704368234 |
Amino acid sequence | MVRTILLRSSHGFMCLSFLVVTRVEMLHLFVLFD |
Secondary structure | LEEEEEEELLLLLEEEEHHHHHHHHHHHHHEELL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL |
PiMo | iiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooo |