NONHSAT080456
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080456 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS),sense |
Length |
2193 nt |
Genomic location |
chr20+:55090750..55093943 |
Exon number |
3 |
Exons |
55090750..55092045,55092162..55092257,55093143..55093943 |
Genome context |
|
Sequence |
000001 GGAAAAAATG CATTTCAAAG GAAACTACTA GAAATGTTCA TATTCCCTTT GACCATTTTG CTTTCGTGAG TTTTCTCTGT 000080
000081 CACAGGTTTC CTGCCAAGTT AATTCAAAGC CCAGTGGGAC TAACATGCTC CTCTCTGCAA AATATTCTCC AGAGCTTCTG 000160 000161 GGAATACCTC ATAGCTACTG CTACCAGGAT ACCAAAATAT TTCCCAAATA CACTTGCAGC TGGAAGCAAG ATATAACATT 000240 000241 TCCTCTCTAA CTCCTTCTTG CCTGTGCTTT TCAAATAACC TCAGCTGTGA ATGGAGGGCT TAGAAGTAAA CAGTTGTCTC 000320 000321 TTATTTGTTT GAAGGACCGA GTATCAGTTT TCACAGATGT GAATGCTTGC ATTGCATGTG TGAAATGCAC AGAAGGTCTT 000400 000401 TATGTTCTGT TATAAATCAC ACTGCATGTA TATGTTAGAA ATTCAAGGCC TGAGAGGTCT TTCTTTAATG CTCAGTGCTG 000480 000481 GGAGATGGCT GAAGTAATCA GGCTGCCTAT TTTTAGTGCC ACCTTTTGGA TGCTTAGGAA ATTGACATTT TAAAGTAAAT 000560 000561 TAAATGAACA TAGTCCTACT TGTCATTTCT GCGATTAAAT CAATTCCAAC GCAGCTGTGT GACCGTAGAA TGGTTTGTTT 000640 000641 TATTATTGCT GATCAAAATA ACTATTATGA GTAGCAGAAT TCTAGTGCCT GGAAATCTAA CAAGAGTAGT TTTGAGTTTA 000720 000721 GAAGAATTAG CTCAACTGTC TTTAATATAA ACTTCAAGGC CTTACACTTG AATAACAAAT ACCAAAGCAG TTTGACAGCT 000800 000801 TTGAAAAAAA GTTAGTGGAA TGTGCAAGAT TTAGTTGGTG TTTATGCTGG CTGGACTTCA CATACCCATA TATACTCTGT 000880 000881 GTTACTCATT TAAGTGCGCT TTTGTATACA GTTGTCACCA TCAACATTGG CCCTTATTAC TGAAATCTGT CAGCCTCATT 000960 000961 TAAATTTTTG CAAATGTGAT TTGGGAGATG TAAATATAAA AGTGAGCAGC TCTGTGCAGA TACATTTTTG TGTGAGGCAG 001040 001041 AAGTGCATGA CTGGTGTCAC ATGCAGAGGG TGAAGGCTTT AGGAGTTACG GAACATCAAA AGCCTTCTTC AGAGTGACTG 001120 001121 TCTGTCTCAT GTGACTAGCA TCGGTCAGTC AGACAGGGCA CCCGGGACAA TGGGCAGCCA CACTGACGCT GAAGTGGAGT 001200 001201 GAATCTGAGC ACAGCCTCCA ACATTCTCTA TCTTTTTGTA GAAAACAAAG AAACCCAAGG CAGCAGAGTC TGTTTCAAAA 001280 001281 CCAGATGTCA GTGAAGAAGC CCCAGGGCCA TCAAAAGTTA AGACAGGGAA GCCTGAAGAA GCCAGCCTTG ATTCTAGAGA 001360 001361 GAAGAAAACC AACTTGGCTC CCAAAAGCAC AGCAATGAAT GAGAGCTCTT CTGGAAAAGC TGGGAAGCCT CCGTGTGGAG 001440 001441 CCACAAAGAG GTCCATCGCT GACAGTGAAG AATCGGAGGC CTACAAGTCC CTCTTTACCA CTCACAGCTC CGCCAAGCGC 001520 001521 TCCAAGGAGG AGTCTGCCCA CTGGGTCACC CACACGTCCT ACTGCTTCTG AAGCCCGCAC TGCCACCGCT CCTGCCCCAG 001600 001601 AAGGTTGTTT AGTTTCCACG TAGGCAGGTC GCTTTGTGCC TCTGAGTGCG CTGCTGTGTG TTCTCTCTAT AGTTCTGTGT 001680 001681 CATAAAGCTG TCCTGGCCAG CCTTCAAGCT GGTGTGGCCA CTCTTGATGT GAGGCGTGTC GGTTCCAGGG GGGACATGGG 001760 001761 AGGGGCTGCA CAGTGGCCCG AGGTCATGCT TGCTTCCACC TGCAGGTGCA TTTGGTCCTT TCCATGGCCA GGAAGCCCTG 001840 001841 TGGGCTGCAC TTTTTATGCT TGCAGTAACA AGAGACTCCA GAGTCCTCAC CGGTGCAGAG TTGGCACATA TTAATTAACT 001920 001921 AAAATTCTAA TGATCTTGCT ACCAGCAATA AATCAAGTAG GCCAAGTGAA ACTGGGCTTT AAAAAGGATG GATTTCAAAT 002000 002001 ACACTGTGCC CACTAGAAGC TTCGAAGGGC CTCGTCCCTC TGCTACAGCC CTGGGAGGAG CCAGGATCCT TGTTGGTCTA 002080 002081 GCTAAATACT GTTAGGGGAG TGTGCCCCAT CTCATCATTT CGAAGATAGC AGAGTCATAG TTGGGCACCC AGTGATTGGG 002160 002161 TTCAAAAATA AAGCTGGTCT GCCTCTTCTC TCC |
Predicted Small Protein
Name | NONHSAT080456_smProtein_1394:1570 |
Length | 59 |
Molecular weight | 6326.8431 |
Aromaticity | 0.0862068965517 |
Instability index | 66.025862069 |
Isoelectric point | 7.82049560547 |
Runs | 7 |
Runs residual | 0.035903751421 |
Runs probability | 0.0305852070558 |
Amino acid sequence | MNESSSGKAGKPPCGATKRSIADSEESEAYKSLFTTHSSAKRSKEESAHWVTHTSYCF |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHLLLLLLLLLLLLLEEEELLEEEL |
PRMN | - |
PiMo | - |