NONHSAT080484
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080484 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1037 nt |
Genomic location |
chr20-:55731074..55732302 |
Exon number |
2 |
Exons |
55731074..55731770,55731963..55732302 |
Genome context |
|
Sequence |
000001 GGCTCCACGT CTGATTGTGC AGGCATGGCG GCAGCGGCAG AGCCTGGCAC ACCTGGTATG TGACACCCAA CCAAAGCCAC 000080
000081 GGTGCACAGG CACCTGCTGC TGCCTCTGCC GCCATGTCCT CAGCCAGAGT GGGCCCTGTG AACTCCTCCT CCCAGCCTTG 000160 000161 CCCAGCCGTG ACCTCCTTGT CCCTGCTTCA GGGACAGGGA TATTGAAGGG TGCTCACCTT CAATATCGTG CCTTAAGCAT 000240 000241 TTCTGTGGCT GCCCACAGTT CATCATCAGA ATGCTTCTTT TGTTCACATT TATTATTCTT GGTCCTagat ttggaaataa 000320 000321 agaacggcac acaggaaaag ACCCCCCTGC AGCCCCGTCT TTGATGGCTG CCTGGACCAC CTGCAGGAGA AGCCCCTCAG 000400 000401 AAGATGGGTC CCTGGAACCT TTGCGCAGGT TTGCTGAACC TCAGGAGTTC ACTCAGCACA TCGTTCGCTC TCAGCTGCCC 000480 000481 CAGCAGGAGC TGCGCAGAAC CGCCTTGGAG GCGTGCTCAG AGGACACTTC CTCACTTTTA TAATGAATCG TGAGCACTCT 000560 000561 CTCCTCGCTT TGGCCGGCAG AGCCTGCCTT TCTGGCCACG TGGACGTCTT CATGCAGGGT CCTGCTGGCC CCTTGACATC 000640 000641 AACAGGCATG AAGCTGCAGC CATCCTCTCC CCTCCCCAAG TTTTGGGCAC CACCATCTCC TAGTCTCTTG AGACTGGCCC 000720 000721 CTGGCTTCTC CCGTTACCCC AGCCTCAGTC CCATCCAATC TGCTCCCCAT TGAGAAGTCC AAGTGGACCC TCTTCTCCGG 000800 000801 CCTCACTGCC CCCAGCCCAC TCCTTGGGCT CCATCCCAGC CTCTTCCTTG GCGGTCCCCC AGCTACTCTC CAGTCCTACG 000880 000881 TGCAGCTGCA TCTTCCAGAT CCACCTGGCA CGGCATCTCC TTCTGCCTCA ATGCCTGGGA TTCAGGACCT TGATCACAGC 000960 000961 TGGGTTTTGT ATAGAAATAA ATaaataaaa ctgaaagaaa aaaacacgaa atgttaatat tgtttatatg aggttgg |
Predicted Small Protein
Name | NONHSAT080484_smProtein_542:772 |
Length | 77 |
Molecular weight | 8062.2944 |
Aromaticity | 0.0657894736842 |
Instability index | 73.5368421053 |
Isoelectric point | 10.2844848633 |
Runs | 7 |
Runs residual | 0.0493042952208 |
Runs probability | 0.0277588512883 |
Amino acid sequence | MNREHSLLALAGRACLSGHVDVFMQGPAGPLTSTGMKLQPSSPLPKFWAPPSPSLLRLAP GFSRYPSLSPIQSAPH |
Secondary structure | LLLHHHHHHHHHHHHHLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLL LLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |