NONHSAT080720
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080720 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1293 nt |
Genomic location |
chr20-:60809963..60813274 |
Exon number |
3 |
Exons |
60809963..60810243,60810805..60811328,60812787..60813274 |
Genome context |
|
Sequence |
000001 GCAGAGTTGA CAAACAGTGA GTCAGGTGGC CCGGGGCGTG GGTGCTCCGC CCTCAGGTGC ACTGCGTCCT GGCGGCAGTG 000080
000081 CGGGCCTGCG AGGCTACCCA AAGCCCTGGG GGCTTTTTCC TACAAATGCT GGGGACCGTG CGATAGCTGG GGCGTAGCTG 000160 000161 CTTCCACTGT CCTACCAAAT CCTGAATATC GTCCACCTCC TTTGCATGCC ATTCACCGCC AACCAAAATC CAGCGCCAAT 000240 000241 TTACCCCTCC AGCTGCATCC CCGACCGTTT CACCACCATA CTTAAAACCC TTTGGACTCC CACTGACCTA CAgtggctcc 000320 000321 agggttaagc ccagaagttc tggaatcaga cctggagctt gcattcttta ccagctgtgt ggatttggac aaattaatta 000400 000401 acctctctga gtctgtgatc actcagtttc atctgcaaac cagggTTCCC CTGTCAACAT CTCATTGAAG TCATGGGTCT 000480 000481 GGTTTGAGGT CACGAGGCCA ATTCAAGAGG CACAGTTCTC CAAGGATGGA AGATGGGGGT GGAGAAGGCA ACAAAGATGG 000560 000561 ATGAGCTGGG GCCatgatga tgaggatgat gatgttgatg atgatgatgg tgatgGCGGC CGAGTGCCCT GTGAtttaca 000640 000641 ggcccatctg gtttcatgtt tgcaacagcc aatcaagtgg gtaccaggtg ccatcattcc cactttacag atgagaagac 000720 000721 tgagccccag acaggttaag tgactccccc aGCCCTGCAA TGAGGAAGGG CCCAGCACAG CTCCAGGCAC AACAAGCAGG 000800 000801 CACTCCAAGC ATAGGGAGGT CTGGTGGACC AGGCCTGGCC CAGGAGCTTG TCGGCAAGGC AGAGCCGCAT CCAGGCTCCC 000880 000881 GGACCAGGAT CCGCACACGA ACAACAGGCC CAGGAGTTCC CATGGCTGTG GCTGCTGGAC CCCCGCACCA GGTGGGCTGG 000960 000961 CGGCTGTGTC CCACACATGC TCTCTAGAGC CTGAGAAATG CTCATCCTGC AGGCACTCCC CAGGCCTTTA GAGAGGACAT 001040 001041 TCTCCCACTC TCTTTTATGG AAAGCCATGG AATCTTCTGT GTGGATGCAG CCTGGGCAGT CAGAGAGGGG CCTGGCCCTC 001120 001121 ACGTGGCCGC AGCTGACCCC TCCCCGCCGC AGCTCTCCAG TCTCCTCTGC GACGTGACAG CCCTGGCTTC TCTGCTGTGG 001200 001201 GGAGGAGAGT ATTTTTAGTT TTGAACCCAC CACGTGAAGC GAGACAAGTT ATCAATAGCA GCAGCAAAGG GCTTTTTCTT 001280 001281 TCTCTCTCTC TTT |
Predicted Small Protein
Name | NONHSAT080720_smProtein_560:742 |
Length | 61 |
Molecular weight | 6726.4402 |
Aromaticity | 0.0333333333333 |
Instability index | 67.6166666667 |
Isoelectric point | 4.39923095703 |
Runs | 9 |
Runs residual | 0.000265957446809 |
Runs probability | 0.0416593063652 |
Amino acid sequence | MSWGHDDEDDDVDDDDGDGGRVPCDLQAHLVSCLQQPIKWVPGAIIPTLQMRRLSPRQVK |
Secondary structure | LLLLLLLLLLLLLLLLLLLLEELHHHHHHHHHHHLLLLEELLLLLLLLLLEEELLLLLLL |
PRMN | - |
PiMo | - |