NONHSAT080778

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT080778

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1756 nt

Genomic location

chr20+:61404869..61407369

Exon number

2

Exons

61404869..61405921,61406667..61407369

Genome context

Sequence
000001 GAAAAATGAA CGTGGCCTTC GGACACAGGG TGGTCCCTTG CCAGGGACTG GATGGAACTG GTTCAATTCC CCGCTCCTGG 000080
000081 GCTTCCTGGT GTGCAACGTG AGCCATGCTC ACCCCAGGGT GGCTGGGAAA AAACGCCGGT CCGCTCTGAG CATTCGTTTC 000160
000161 AGTGATGGCT GTTCTTGTTC ACGTGAGATG TGCCAACTCT ACAATACTAA ACCGTTGGGA GAAGCTTCAA GGGGACAGCA 000240
000241 CCTGGGGAGG GGCAGTGGCG GGCTCCAGGT TGCCCAAGGC TGTCATGGAG AGGAGGAGAC CCCAGTCCAG CCCAGCCTTG 000320
000321 TGCCTGCAGT GGAGGTTCCA GTTGTGAAGG GGCTCCAAGT GCCTTGTTCA TCCTTTGCTT GATAATGAAC CACCTCTGCC 000400
000401 AGGTGCCAGC TGTACTGTGC ACCTGCAGCT CCACACCCTC TAGGCACCAG CCCCTCCACT CTTTGGCCTC TTCGACAGGG 000480
000481 AACCCCGAGG GGACAGTGGA GCAGGCCTGG GGCTGTTCCA GGCAGCAGGG GGGCGCCTGG GTCAGCGTCC CCACCCGCTG 000560
000561 CCCTCCCCGG CCTTCCAACT TGCTGTGTGC ACATTAACAA CATGGACGGT CTTTTTCTTT TATTATAAAA GTGATTCATT 000640
000641 CTCTTGTGAA GATTTAAATA TGAAAGAGTG GATCTCCGCT AATCCCACCC GGTGATGATA GCAGCCGACA GATGGGCGAG 000720
000721 CATAGAGCTC AGACATTGCC AGCAGCGTCA GATCCTTATA TATCCAGAGC ACGGCTCACA CGCCACCGCC CTGCTGGCTC 000800
000801 TGTCAGCCGC ATGGTCCTCC GCGACACCTG GGGCTCTCCC TCCTTCCTTT GTGTGCACAA CCTCAAAGCC ATTTTTTCCA 000880
000881 GACTTGGCGT GAAGATGATT TTCTGACACG TTGATGCTTC TGAAGCACAA GGAGGGCCCT GTCTCCACGG TGTCCAAGCA 000960
000961 GAGGCTGACA TCCTTTCAGG AGGGAGGTGA TTCGGGCGCA GCTGGGCTGG CGGGAGGCAT GGAGGCTGAG TCCCCTTCCT 001040
001041 CACTGCTCTC TACCTCCCAA GAGAGGGGGA GCCTCCTGTT AAGCATCCAA GTCCCAAGTC ACCGGCCGGC ATCGGCTGCA 001120
001121 GCTCTCTGTG TGTGGAGACA TCTCATTCTG GTGTCTTCTT TACACAGGTC AGCGCTCACA GGCTCGGCTG TGTCTCAAGA 001200
001201 CCCAATTCCT TCGAGTCACT GAGATGCCCA AGGACAAGGG CAACAGAGAG TGTGAAAAGC TGGAGTAGAC AGGACAGAAA 001280
001281 ACAGGGTGCA GCGTCCCCCA GGTTGGCAGA TAGCCCAGCC CCAGGGACCC CACAGCCATG GCAACCTGtg tgaatgagcc 001360
001361 ccaggagcag ggcagtacac gatctgcgcg actgtgcggg gcagccctgG GTCTCTgcct caggggagag attgtgtcct 001440
001441 cgccttttgt ggtttctaga ggttcctgcc ctccttggct gcacggcatc tcccagcctc tctctccctt ccgtcgtccc 001520
001521 ctctcctcct ctgaccctga ccctcccagt ccctcttaga ggggctgtga ttaaactgtg cccaccctga ccatccagaa 001600
001601 taatctccca tctcaaggtc cttaacAGCA TGTGGAACTG CACTAGCCGC CCCAAGGCCC CCAAAAGGCA ACCCTGGATT 001680
001681 GGGCCCCCCA AGTTGCCTGG GATTCATGGC CACCACCCGG CTCGACGGCT CCAGACCGAA ATGCACCCAG TTATAG
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Predicted Small Protein

Name NONHSAT080778_smProtein_1337:1558
Length 74
Molecular weight 7676.6426
Aromaticity 0.041095890411
Instability index 94.3095890411
Isoelectric point 7.69500732422
Runs 9
Runs residual 0.0208572691118
Runs probability 0.0345345345345
Amino acid sequence MATCVNEPQEQGSTRSARLCGAALGLCLRGEIVSSPFVVSRGSCPPWLHGISQPLSPFRR
PLSSSDPDPPSPS
Secondary structure LLEEELLLLLLLLLLHHHHHHHHHLLEEEEEEEELLEEEELLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLL
PRMN -
PiMo -