NONHSAT080778
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Contents
[hide]Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080778 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1756 nt |
Genomic location |
chr20+:61404869..61407369 |
Exon number |
2 |
Exons |
61404869..61405921,61406667..61407369 |
Genome context |
|
Sequence |
000001 GAAAAATGAA CGTGGCCTTC GGACACAGGG TGGTCCCTTG CCAGGGACTG GATGGAACTG GTTCAATTCC CCGCTCCTGG 000080
000081 GCTTCCTGGT GTGCAACGTG AGCCATGCTC ACCCCAGGGT GGCTGGGAAA AAACGCCGGT CCGCTCTGAG CATTCGTTTC 000160 000161 AGTGATGGCT GTTCTTGTTC ACGTGAGATG TGCCAACTCT ACAATACTAA ACCGTTGGGA GAAGCTTCAA GGGGACAGCA 000240 000241 CCTGGGGAGG GGCAGTGGCG GGCTCCAGGT TGCCCAAGGC TGTCATGGAG AGGAGGAGAC CCCAGTCCAG CCCAGCCTTG 000320 000321 TGCCTGCAGT GGAGGTTCCA GTTGTGAAGG GGCTCCAAGT GCCTTGTTCA TCCTTTGCTT GATAATGAAC CACCTCTGCC 000400 000401 AGGTGCCAGC TGTACTGTGC ACCTGCAGCT CCACACCCTC TAGGCACCAG CCCCTCCACT CTTTGGCCTC TTCGACAGGG 000480 000481 AACCCCGAGG GGACAGTGGA GCAGGCCTGG GGCTGTTCCA GGCAGCAGGG GGGCGCCTGG GTCAGCGTCC CCACCCGCTG 000560 000561 CCCTCCCCGG CCTTCCAACT TGCTGTGTGC ACATTAACAA CATGGACGGT CTTTTTCTTT TATTATAAAA GTGATTCATT 000640 000641 CTCTTGTGAA GATTTAAATA TGAAAGAGTG GATCTCCGCT AATCCCACCC GGTGATGATA GCAGCCGACA GATGGGCGAG 000720 000721 CATAGAGCTC AGACATTGCC AGCAGCGTCA GATCCTTATA TATCCAGAGC ACGGCTCACA CGCCACCGCC CTGCTGGCTC 000800 000801 TGTCAGCCGC ATGGTCCTCC GCGACACCTG GGGCTCTCCC TCCTTCCTTT GTGTGCACAA CCTCAAAGCC ATTTTTTCCA 000880 000881 GACTTGGCGT GAAGATGATT TTCTGACACG TTGATGCTTC TGAAGCACAA GGAGGGCCCT GTCTCCACGG TGTCCAAGCA 000960 000961 GAGGCTGACA TCCTTTCAGG AGGGAGGTGA TTCGGGCGCA GCTGGGCTGG CGGGAGGCAT GGAGGCTGAG TCCCCTTCCT 001040 001041 CACTGCTCTC TACCTCCCAA GAGAGGGGGA GCCTCCTGTT AAGCATCCAA GTCCCAAGTC ACCGGCCGGC ATCGGCTGCA 001120 001121 GCTCTCTGTG TGTGGAGACA TCTCATTCTG GTGTCTTCTT TACACAGGTC AGCGCTCACA GGCTCGGCTG TGTCTCAAGA 001200 001201 CCCAATTCCT TCGAGTCACT GAGATGCCCA AGGACAAGGG CAACAGAGAG TGTGAAAAGC TGGAGTAGAC AGGACAGAAA 001280 001281 ACAGGGTGCA GCGTCCCCCA GGTTGGCAGA TAGCCCAGCC CCAGGGACCC CACAGCCATG GCAACCTGtg tgaatgagcc 001360 001361 ccaggagcag ggcagtacac gatctgcgcg actgtgcggg gcagccctgG GTCTCTgcct caggggagag attgtgtcct 001440 001441 cgccttttgt ggtttctaga ggttcctgcc ctccttggct gcacggcatc tcccagcctc tctctccctt ccgtcgtccc 001520 001521 ctctcctcct ctgaccctga ccctcccagt ccctcttaga ggggctgtga ttaaactgtg cccaccctga ccatccagaa 001600 001601 taatctccca tctcaaggtc cttaacAGCA TGTGGAACTG CACTAGCCGC CCCAAGGCCC CCAAAAGGCA ACCCTGGATT 001680 001681 GGGCCCCCCA AGTTGCCTGG GATTCATGGC CACCACCCGG CTCGACGGCT CCAGACCGAA ATGCACCCAG TTATAG |
Predicted Small Protein
Name | NONHSAT080778_smProtein_1337:1558 |
Length | 74 |
Molecular weight | 7676.6426 |
Aromaticity | 0.041095890411 |
Instability index | 94.3095890411 |
Isoelectric point | 7.69500732422 |
Runs | 9 |
Runs residual | 0.0208572691118 |
Runs probability | 0.0345345345345 |
Amino acid sequence | MATCVNEPQEQGSTRSARLCGAALGLCLRGEIVSSPFVVSRGSCPPWLHGISQPLSPFRR PLSSSDPDPPSPS |
Secondary structure | LLEEELLLLLLLLLLHHHHHHHHHLLEEEEEEEELLEEEELLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLL |
PRMN | - |
PiMo | - |