NONHSAT080916
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080916 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1250 nt |
Genomic location |
chr20-:62330809..62332129 |
Exon number |
2 |
Exons |
62330809..62331882,62331954..62332129 |
Genome context |
|
Sequence |
000001 TTCTGAGAGT CCCGGGCCCA CAGGCAGGAC AGGGCCAGAC GTGGGGGCTG CTCCTCACGG CCTTACCTCC CCCAGACGTG 000080
000081 CCTCTCAATC CCTGACATCA AGACGGCCTT CAGCGACTGC ACCAGCAAGA TCGGCAGGCG AGATTGCCTG ACCCAGGCCT 000160 000161 GCTCGGCCCT CACAGGCAAA GGGGTGCGCG AGGGCATCGA GTGGATGGTG AAGTGTGTCG TGCGGAATGT GCACCGGCCG 000240 000241 CCGCGGCAGA GGGACATCAC GTAGGCGCAG CCGCGCTGCC GTCGGGACGG CTGGTCCCCT GGTGCTGGAG GAGTGGCCTC 000320 000321 CTGTTGGCTC CCATGCTGCT GATCTGGGGG GTGGGTTTGC TTTGCTTTGG GGTTCTTCTA TTTACTTTGT TTTCTCGAAG 000400 000401 ACAAACTTTC CTCTATGTCT GGAAAAGCGT AGGCATCCGG AGGCTTTGGA GGGGAGTCTG GCAGCCCGGC TGGCCCAGGC 000480 000481 CCTGCAGCGG CAGCCTTTCC ACAGGGCGCA GCGGCGGCCT TTCGAGGCCC TTTCTGGGGG GTCTGAGGGA GACCTGGTTG 000560 000561 GGAATTGGGG CTCCAGTGCT CAGGCTGGCT TGGGCTGCAT GAGGACAGCC CTGTGGGACC CTCGGGAGAC CCCGTGGCTG 000640 000641 TCTCCGCCCC ATCGAGGAGG AGGCCCGTCA GCCATGGCTG CCATCTGGCT TCTGCCCTgt gaccccgtga ccccgtgacc 000720 000721 ccgAAGTGGT CTGGGGCTGA TCTTGCCTTG AGGAAGACCC AGGCCATGTT CCCAAAGGCC AGCGGGGGCC CTGGATTGTG 000800 000801 ATGCAGCCTC GGGACAGGGC TGAGGCCTGC GGGGGAAGAC CTATACCCCA CGCCTGGGCC TGGCTTCACC TCACCCTAAT 000880 000881 CCCCCGGGAG GGAGCTGACT GATGCAAAAA GCTGAGGGGG CCTGCTGGGA GTGGCTGTTT TTATGCCCCA GCCCCGCAAG 000960 000961 TTGGGGAGTG TTTGTGGGGG TCCAGAGCCC TCCCCCAGCC AGGAGAGAAC CTCCCGGAGG GGTTCTCTGT GGGGCCCTGT 001040 001041 GTCCCCTGCT CGGGAGTAAG GCTGGTCCTG GGGTCCTCCC TGCACGGACC CCACTGGGCC TGCCGAGTGC TGTGTTCTTC 001120 001121 CTCAGTCTGG CTGTGGGCAG GAGCGGCCTG CCCAGTGTCA CCCAGGGTGA GTGCAAAATA AAGACGGCGA GTGTGGCTCT 001200 001201 GTCCATCCCT TCCCTCCTGG AGGGTGGAGG CTCCTGGCTG TTGGACACGG |
Predicted Small Protein
Name | NONHSAT080916_smProtein_332:601 |
Length | 90 |
Molecular weight | 9960.7532 |
Aromaticity | 0.14606741573 |
Instability index | 48.1797752809 |
Isoelectric point | 12.0037231445 |
Runs | 17 |
Runs residual | 0.0478078871998 |
Runs probability | 0.0372050250942 |
Amino acid sequence | MLLIWGVGLLCFGVLLFTLFSRRQTFLYVWKSVGIRRLWRGVWQPGWPRPCSGSLSTGRS GGLSRPFLGGLRETWLGIGAPVLRLAWAA |
Secondary structure | LEEEELLLEEELEEEEEEEEELLEEEEEEEEELLEEEEEELEELLLLLLLLLLLLLLLLL LLLLLLLLLLHHHHHHLLLHHHHHHHHHL |
PRMN | LLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | i??????????????????????????????????????????????????????????? ????????????????????????????? |