NONHSAT080929
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080929 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1900 nt |
Genomic location |
chr20+:62375949..62378647 |
Exon number |
2 |
Exons |
62375949..62376081,62376881..62378647 |
Genome context |
|
Sequence |
000001 TTCATGACAT GTCTTTTCCC TCCACGCCTC CTGAGATGGA CGTGCTCACC TGGGCCTCGG AAATCCCACA CTCTTCAGTC 000080
000081 GGCAAACTGC GAACAAGAAC AGGAAATCTG CCACGCAGCA AACACTTGGG GAGCCCTGAA GCTCAGCACT CCGGGGGGTC 000160 000161 TTCACACGGG CAGGTCCTGG AGGGAAGGAG GAGGCCACCG CGCCCACCTC CCATCTGAAG GCACAGCACC GCAGTGGTGG 000240 000241 CCTGTGCCAG AGGAGGGGGT GAAGGATGGA ATGTCCTCAT GGTGAGTGCT GTCAGAGGCA GGCCTGAACG AGAAGACAGG 000320 000321 CCGTGGCAAC GGTCCCGAGG CTGTGAGTCT AGGCAGCCTG CCTCCGGGAC CCCCAAAGCC AGGCGGTGCA CCACAGCACA 000400 000401 CACCGTGGGA CCTTTGCTTT TCACTCAGGA AAAGAAAGAA CATGTGAGTG CTTCTGAAAA CACAGCAAGA GGACTTGAGC 000480 000481 ACAAGCTAAA GGAAAAACAA CCCTATATAG TTTCTTCGAG TGAGAAAAAT AATGCCAAAC AAAATAATTT TATGTAACTA 000560 000561 CCTCGATATG TCTCTGACTA CTTAAAAATT TGGTTACCCA CGCGGGGAGG TGTAAGCAGC ACACTGCAGT TAGGAACACC 000640 000641 GCCTCCAGTG TTAGCAGCAA AGGCAGGAGC CCAGCTCCAG CCCGTCCAGG AGGGGTCAGC AGGAGCGGCC GGGCTGGGCC 000720 000721 ATGGGCAGAA CAGGACGGGC AGAGCCCGGG GTGGACGTGG CAGCCCAAGG CTCTCCGAGG AAGTGCACAC GACTGAGCCG 000800 000801 AGGCCCTTGC AGAGGGAACC TGGTGTGGCC TGAAGTGGTG GGGGGCACAG GGCTGAGGGT CCCCTCCTGG AAGGAGCCCC 000880 000881 CAGGGCTGTG TCCACCTAAG ATAGCACCTG GAGCCCTCGG CCTCCAGCAG GGTCTGCAGC TGTGTTGTGT GTTAAGCACC 000960 000961 AAAGCCCAGA GGTAAGACGG TGGCAGGGCT CTCTGTGCAC CTGGATTCTA CAGGCTGCCA TGGGCCACGG CTGCACCACG 001040 001041 GGCCACGGCT GCAGCCACAG GCAGTGACCT GGCTGCTAGG GGAGGGGAGG GCGGGCTCCA GCCGGGCTGA CCGGGTGTCT 001120 001121 GTAAAACTCT GCACCTGCTC AGGCCAGGGG CCTCTGGGCC GAACACACCA CCCCGCCCAG TGCCCACTGG ACCCGGCCAC 001200 001201 AGGCCCATCA CGTGTCCAAG CCAGGCTGGC CATCACAGGG GCCACTCACA CACCCGCACC ACCTGCTGGG GACTTAGGAC 001280 001281 CGTGCTCTCC CTTCACTCAA ACCCACCCTG TGCCCTCCCC CAACTCACTT CATGTCTGGT CCCAGAGCAC CCCTCTTGCT 001360 001361 GGGGTCGCAC CTGCTTAGCC CGCAGGGCTG GTTTCCGTGG GGGGTGGGTT CAGGGGGAAG CAGAGGAGGG GCCGCGAGAG 001440 001441 GGGTGAGCGT GGCCCTGGCC CCGCAGTGGA GACCCACCGG ACACACACAC GGGTGGACGG AGCGAGGCAG CCACCGACCC 001520 001521 TGCCGGCGGG CGGGCCTAGG AGAGCCAGGC GAAGTCCTTG TCAGGGCCTC CTGGGGGGCT GCGCGGCCGC GGCGAGTCTT 001600 001601 CCTCATCCTT GTCGTCCGCC AACAGCGCAT CCTCAGGGGC CAGGCCCTCG TCGTCCTCGC CCAGCTCCTC CGCCTCCCCT 001680 001681 CGTGGGTCCT CAGGGTCCTC CAGATAGGGC CCGTCGCCTG GGAACAGCGC CTCTGGAGAG CCCTCGCCGC CTCCGCCGCC 001760 001761 ATGGTCCAGG GGCCCGGCCA TGCCGCGGCC AGCACAGTCG GTGCACACAC CGTGGCGCCT GGAGCCATGC CTGATGCCCA 001840 001841 CGCTGGCGGC GGACATGAAG ACGCGGCTGC ACACCTTGCA CACATACTTC TTGTCCTTGC |
Predicted Small Protein
Name | NONHSAT080929_smProtein_278:556 |
Length | 93 |
Molecular weight | 10434.6046 |
Aromaticity | 0.0434782608696 |
Instability index | 50.1684782609 |
Isoelectric point | 10.1013793945 |
Runs | 15 |
Runs residual | 0.0278385986863 |
Runs probability | 0.0260024730613 |
Amino acid sequence | MVSAVRGRPEREDRPWQRSRGCESRQPASGTPKARRCTTAHTVGPLLFTQEKKEHVSASE NTARGLEHKLKEKQPYIVSSSEKNNAKQNNFM |
Secondary structure | LLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLEEEELLLLLEEELLL LHHHHHHHHHHLLLLEEEELLLLLLHHHLLLL |
PRMN | - |
PiMo | - |