NONHSAT080929

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT080929

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1900 nt

Genomic location

chr20+:62375949..62378647

Exon number

2

Exons

62375949..62376081,62376881..62378647

Genome context

Sequence
000001 TTCATGACAT GTCTTTTCCC TCCACGCCTC CTGAGATGGA CGTGCTCACC TGGGCCTCGG AAATCCCACA CTCTTCAGTC 000080
000081 GGCAAACTGC GAACAAGAAC AGGAAATCTG CCACGCAGCA AACACTTGGG GAGCCCTGAA GCTCAGCACT CCGGGGGGTC 000160
000161 TTCACACGGG CAGGTCCTGG AGGGAAGGAG GAGGCCACCG CGCCCACCTC CCATCTGAAG GCACAGCACC GCAGTGGTGG 000240
000241 CCTGTGCCAG AGGAGGGGGT GAAGGATGGA ATGTCCTCAT GGTGAGTGCT GTCAGAGGCA GGCCTGAACG AGAAGACAGG 000320
000321 CCGTGGCAAC GGTCCCGAGG CTGTGAGTCT AGGCAGCCTG CCTCCGGGAC CCCCAAAGCC AGGCGGTGCA CCACAGCACA 000400
000401 CACCGTGGGA CCTTTGCTTT TCACTCAGGA AAAGAAAGAA CATGTGAGTG CTTCTGAAAA CACAGCAAGA GGACTTGAGC 000480
000481 ACAAGCTAAA GGAAAAACAA CCCTATATAG TTTCTTCGAG TGAGAAAAAT AATGCCAAAC AAAATAATTT TATGTAACTA 000560
000561 CCTCGATATG TCTCTGACTA CTTAAAAATT TGGTTACCCA CGCGGGGAGG TGTAAGCAGC ACACTGCAGT TAGGAACACC 000640
000641 GCCTCCAGTG TTAGCAGCAA AGGCAGGAGC CCAGCTCCAG CCCGTCCAGG AGGGGTCAGC AGGAGCGGCC GGGCTGGGCC 000720
000721 ATGGGCAGAA CAGGACGGGC AGAGCCCGGG GTGGACGTGG CAGCCCAAGG CTCTCCGAGG AAGTGCACAC GACTGAGCCG 000800
000801 AGGCCCTTGC AGAGGGAACC TGGTGTGGCC TGAAGTGGTG GGGGGCACAG GGCTGAGGGT CCCCTCCTGG AAGGAGCCCC 000880
000881 CAGGGCTGTG TCCACCTAAG ATAGCACCTG GAGCCCTCGG CCTCCAGCAG GGTCTGCAGC TGTGTTGTGT GTTAAGCACC 000960
000961 AAAGCCCAGA GGTAAGACGG TGGCAGGGCT CTCTGTGCAC CTGGATTCTA CAGGCTGCCA TGGGCCACGG CTGCACCACG 001040
001041 GGCCACGGCT GCAGCCACAG GCAGTGACCT GGCTGCTAGG GGAGGGGAGG GCGGGCTCCA GCCGGGCTGA CCGGGTGTCT 001120
001121 GTAAAACTCT GCACCTGCTC AGGCCAGGGG CCTCTGGGCC GAACACACCA CCCCGCCCAG TGCCCACTGG ACCCGGCCAC 001200
001201 AGGCCCATCA CGTGTCCAAG CCAGGCTGGC CATCACAGGG GCCACTCACA CACCCGCACC ACCTGCTGGG GACTTAGGAC 001280
001281 CGTGCTCTCC CTTCACTCAA ACCCACCCTG TGCCCTCCCC CAACTCACTT CATGTCTGGT CCCAGAGCAC CCCTCTTGCT 001360
001361 GGGGTCGCAC CTGCTTAGCC CGCAGGGCTG GTTTCCGTGG GGGGTGGGTT CAGGGGGAAG CAGAGGAGGG GCCGCGAGAG 001440
001441 GGGTGAGCGT GGCCCTGGCC CCGCAGTGGA GACCCACCGG ACACACACAC GGGTGGACGG AGCGAGGCAG CCACCGACCC 001520
001521 TGCCGGCGGG CGGGCCTAGG AGAGCCAGGC GAAGTCCTTG TCAGGGCCTC CTGGGGGGCT GCGCGGCCGC GGCGAGTCTT 001600
001601 CCTCATCCTT GTCGTCCGCC AACAGCGCAT CCTCAGGGGC CAGGCCCTCG TCGTCCTCGC CCAGCTCCTC CGCCTCCCCT 001680
001681 CGTGGGTCCT CAGGGTCCTC CAGATAGGGC CCGTCGCCTG GGAACAGCGC CTCTGGAGAG CCCTCGCCGC CTCCGCCGCC 001760
001761 ATGGTCCAGG GGCCCGGCCA TGCCGCGGCC AGCACAGTCG GTGCACACAC CGTGGCGCCT GGAGCCATGC CTGATGCCCA 001840
001841 CGCTGGCGGC GGACATGAAG ACGCGGCTGC ACACCTTGCA CACATACTTC TTGTCCTTGC
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Predicted Small Protein

Name NONHSAT080929_smProtein_278:556
Length 93
Molecular weight 10434.6046
Aromaticity 0.0434782608696
Instability index 50.1684782609
Isoelectric point 10.1013793945
Runs 15
Runs residual 0.0278385986863
Runs probability 0.0260024730613
Amino acid sequence MVSAVRGRPEREDRPWQRSRGCESRQPASGTPKARRCTTAHTVGPLLFTQEKKEHVSASE
NTARGLEHKLKEKQPYIVSSSEKNNAKQNNFM
Secondary structure LLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLEEEELLLLLEEELLL
LHHHHHHHHHHLLLLEEEELLLLLLHHHLLLL
PRMN -
PiMo -