NONHSAT081013
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT081013 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5263 nt |
Genomic location |
chr20+:62665697..62671315 |
Exon number |
4 |
Exons |
62665697..62667400,62667490..62669555,62669649..62669801,62669975..62671315 |
Genome context |
|
Sequence |
000001 GGAGATCCCT GCCTGCACGT GGGGCGGTCC TGGTAGACCA GAATGTGGGT GTGGGTCCCC CTTCCCTGTG GTTCTGGGGA 000080
000081 CCTTGAGGAC ATGGTCAATC CCGGGCAAGG GACCTGCCAC CCCTGTATGG GGTCAGGAAC TGCTGGTTGG TCTCTGCTGG 000160 000161 GCAGGCAACC TGGGGTCCAG CTCAAATCGT TGGAATGTGG AAGTCCTTCC TCTCGCCCCG TCCTGAGGAG CAGCTGCAGG 000240 000241 AGCTTCATGA GTGTTTTCAC TGGAACTTGT GGAGGAGTTT CCTTTGATCC CTCATGGAGA GACGGAAGCA TGAGGGAGCC 000320 000321 CTCAACATTT ATTCTGAAGA TGAAGAGAGT CCTGCAGCTT TTTGGAGTTT GTGAAGTCAG CCCGGCCCTG TACAGATGTG 000400 000401 GAAACCGAGG CCCAGGAAGT TTGTGAGCCA GCCCGGCCCT GTACAGGTGT GGAAACCGAG GCCCAGGAAG TTTGTGAGCC 000480 000481 AGCCCGGCCC TGTACAGATG TGGAAACCGA GGCCCAGGAA GTTTGTGAGC CAGCCTGGCC CTGTACAGAT GTGGAAACCG 000560 000561 AGGCGTAGGA AGGAAGCCCT TCTCTGACCT CAGAGCTGAA ATGGCCAGTG CTGGGTGGGC ATTGAGGGGT CACACAGAAA 000640 000641 AGAATGTTTC AGGCCATGTT CAGGGGATAC TTCCTGCAGG GCCCTTGGAA AGTTCCGGAG CGCTTACATT GTCCATGTGT 000720 000721 GAGTGTCTCC TCTTTCTTGC CTGTGTGGGG TTTTCTCAAA TGCTTTGAGT TGGCCAAACC ACAGTTGTGC GCCACTTAAC 000800 000801 AGTGCGGATA CATTCTGAGA AAAACCTCGT TAGGTGATGT CGTCTTGCAA ACATTAAAGA GTGCATTTAC ACAAGGCTGG 000880 000881 CAGGCACGGC CTCCTGCACC CCCAGGCTGT GTGCCCGGGT GCCAGAGCCT GGGGCTCCTG GGCTGCAGAC CTGCACAGCC 000960 000961 TGTCACAGCA TTTAATCACA TCCAAACACG GAAAAGGCAA AAACGTAAAG ATGCAGTGTT ACAATCCTAG GGGACTCCTG 001040 001041 TCACCTGTGT GGTCTGTTCT TGACTATTGT GAGTCACTGA CTTTTCCCCC TGGGAAACTA CCTTAACTTG TCTTCAACTG 001120 001121 AAATTTTTTC AGCCTGCAAA GATGAGTTGT GCCTCAGAGG TTGCTCGTGT TCTGAGGTGC CTCTTCACCA CTGCCTGTCA 001200 001201 GGCTGCTAAC CAGAGTGCCC CAGACCACAG CAGAAGCGAC AGCAGCCAAG GATCGGGGGA GCCCACCCTG CTCCTGGGTA 001280 001281 TCTTTACGGC AGGCAGCAGA GTAACAGCCT CAGACTTACC TCTTCAGCCA GAGACCCCTC AGCCCAGGAG GAGTGAGGCC 001360 001361 GGGCCAGCAG CGGGGGCCCG GGAAGCCCCA TGTCTTGGGA CCTGCTGGGG CAGGGCCCCC TGGATGTCAG GCTGCAGGTC 001440 001441 CGGCAGCTGG GGAGGGGATG AGGGCCTCCC ACCAGCTCTG CCCATCAGCC AGATCCCTGG GAGAGGCAGC ACTTGCTGGC 001520 001521 CACAGAGTCG GCCCCAGTCT CACCTGGCTC CCCTCCCCCA CCAGCTGGGC CCTGCACTGC CCCAGCCCAC GCGGCGCCTC 001600 001601 ACCCCTCCTT GACAGAACAG TATCTCTGGG ACGGACAAGT TAATCCAAGA CCCACAGTAG CCCTGGATCC CCTGGGAGAG 001680 001681 GTGGCTGCCC AGCTCCAGGG CCAGCTTGGA GGAGCCAACT TCAAAAGCCT CCGCCTGGCC TGCCCCTCTG CAGTCCTCCA 001760 001761 GGCAGCCTGT CCAGGGAAGC GGTTGGCTGG TGTTGGACCT GGTGCGGCAG TGCACACCCT GCCCAAGGAC CCCAGGATCA 001840 001841 TGTGCGTGGC CTGCTGGCGG GAGTGAGGGA GGGCAAGACC CTGAAAGGCC CATGGTGAGC AGCTGTGGGC CTCCTCTAGG 001920 001921 GAGGGGGCTT ACTTGGGTGG AGGGGCTGGG GGTACACACA GCTCAGGAGA CACTGCTTGT TCCCCTGAGC CCCACCAGGA 002000 002001 AATCTCCGGT TGGCTCTGGT CACTGCGTCC CTGTGGGTGG CACTGGGTGC ATGTGCCCTG GCTTCTGGCA GTTGGGGGAG 002080 002081 GGGGGCTCCT GGGTGCCGGG CAACCCTGTT CTAAGCTGGG CTGAGGCTTG AGCCTGGAAG TGGTACTAAC AGGCCAGTTG 002160 002161 GGACTCCCAG GGCAGCCAGT CTGCCCCACC TGGGTGGGAC ACAGCAGGTG CTGGACATCC TTGCAGCTCC AGCTGGCCTG 002240 002241 CTCAGGAGTC AGGCTCTGGT TCTCGCTATG ACCTCTGACC CAGAGCAGGC AGAGGGAATG ACGTGGCAAT TCTGAGCCCA 002320 002321 CCAAGTTGGC TGTGGCGTGT GTGGTTGGGG GGGTCAGGTT TCAGGAAGGG GCCACAGCAA GCCATCTGCT CTTCCAGCCA 002400 002401 TTGCTGCTTT GTGCTCTGAG CAGGAGCTGC CACCGCCCAC CAGGCCCCCA GCTCTATGCA AGGGTTGGGG TGCTGCTTGT 002480 002481 TCAGGCTCCC CTGACAGGGC TAGGAAGCCG AGTCGAGTCC TCTTATCTTG GTTGGGTTCG CATGATTAAT TTCCAGCCCT 002560 002561 AGATCTGCTG TCTGACTCCA TCCTGGGGGC CCAGGGGAAG GGTTGGGGCT GGCCCCTTTT GGGTGGCTGG GAACCTGGGG 002640 002641 GCCGTCAGCT GTCTCCTTGA TGTTTGGGCT TTATCCCTGC GGGCGCAGGC CCTCCATTTT GGGTCGGGGG AGGCCTGTGG 002720 002721 CACAGGCTGC CCGGAGGGAT GGCGTGGGGC GGCTGGTACA GGCAGAGGGG CCTTTTGCGA CTGTTGGTTG GGGCTGGATG 002800 002801 TGGTGGCTCC TTCCTCCTCT ATAGCTTCTG GGTGTCCCCC TAGCTTTCCC CTTCCAATAG GGTGTGGCTT GGAGCTCTGA 002880 002881 GCCCCTGCCC CAGTTGGGTT GGGGGTACAA GGAGTCCCCA GTTCCCACGT CTCTGTGAGC TAACCCAGAG GGCGCCAGTA 002960 002961 TGGGAGGTGT GGAGTTGAAT GGGCATGGCC ATGAGTGAGA CAGGCTGTAC TGGGACAACT TCCTACTGTA CCCCCAAGAG 003040 003041 CCTGCAGACC AGCCCCACTA GAGCTGTACG GGGCTGGTGG GGGGCCCTGC TCTGTGCGGT CCTGAGGGTG CTCCACCCCT 003120 003121 TGCTGGCCCC ACTCCCACGT GGACCACAGA GCCAGGCTCT CCTGACTCTG GGCCTGCCCC CTCTATCTCC TGATGGGTTC 003200 003201 TTCAGGACTC AGTGACATCG CCTCCCAGCC GACATCACTC ACCCCTTTCA CATCTTTGCA GGGAGCATAG AACTGTCTGG 003280 003281 TTTGCAGACC TATCTCTTGT GTCTCCTGAT TTATCCCGCC AGGCCTGTGC CTACAGCCTT TCTTGATTGG TGACACGTCC 003360 003361 ATTTCATTCG CTCAGAGATC CCGTGGGGTG GGGCAGGGGG TGGGGCTTCT ACGGAAACAA AGTGCAGGTG GGCTGGCTGC 003440 003441 TCCCTGTGCT GGGAACACCC CCCAGGCCTA ACCCCAACCT GCTGTCTCCT CCAGGTACCC CCTAAGCCTG CACTCTGGGC 003520 003521 GCTCCTGCTG GCGCTGCTGG GGACCGCGCC AAGCCGCGCC TATTCCCCGG CCTGCAGCGT CCCCGACGTG CTCCGCCACT 003600 003601 ATCGCGCCAT CATCTTCGAG GATCTGCAGG CCGCCGTGAA GTGGGGCGGG GCGGGGGCCG AAAAGACCAG GCCAGGCTCC 003680 003681 AGACACTTTC ATTTCATACA GAAAAACCTG ACTAGACCCG GGAGCTCGGG ACGGCGGGGA CGGCCTCGGG CCTCCTGTGG 003760 003761 CGCCCAGAAG GAGCACAGTA TCCTCCTGTC CATCTCGTCC CTGGGTCGGA CCCTGCGCGG GGCGGTGGCC GGGGGCCGCC 003840 003841 GCGGGGCCCT GGAGAGAGCT GCTTGGACCG TGGCTGTGCG CACCGAGGCG GTGATGCGGC GCCACTGCAG GACGCTGCGC 003920 003921 CAGCGGAGCC GGCGGCCCAA GATGCGCCCT GCCCGGCGTC GCGGCGGCCG AAGGCAGCTC CTGCTGCGCG CCCTGGACGC 004000 004001 CGTCGCCACC TGCTGGGAGA AGCTCTTCGC GCTGCGCGCC CCGGCCTCCA GGGACTCCTA GCGCGGCCCG TCCTGGCCCT 004080 004081 GCGCGGGGAG GAGAACCAGC GGGGCCGCGG CAGAGCCTGG AGACGCGCCT CGTTCTGTAG ACTTGTTGGT GACCTCGGCC 004160 004161 CCTCGCTCGA CGCAGCCCGC GCTCCCCGGA GGGCCCAGGA CTTGGAGAAG GGAGCGCGCC TGGCCGCCGC TGGGTCACGG 004240 004241 AGGAGGCCCG CCCTCCACGC GCCGAAGGCC TCAATAAACG GAGCTGGCGC TGCGGGTCCG GCACTCCCTT CGCCTGCCTC 004320 004321 TCTGTGGGCC TAGGACCGCC CCGGGATCTG CGCCTCGGTG GCGGGGGGCG GTGGAGGGGG AATGCGGAGA CCCGCACTTC 004400 004401 CTGTGGCACC TGGACGGGGC GGAGCCGCCG CTCCCAGCCT CGGGCAGCAG AGGGCGGACG CGGGACGCTG GGCGCGCTCC 004480 004481 GGCTCTGTCA GCGGCTCCCG GCTGGGCGGA GGGCAGAGCG GGGGACTCCT GGGGCCCCTA AAACGTCACG TATCCGTCCT 004560 004561 GCTCCACTTT GGACCGGGGC CGGGGGTGGA AATTGAGGGG AGGGGAAGGC TGGACTTGGT GAATTCGGAG CAAAACAACC 004640 004641 GGATAAAGGA AACGGGCCCG AAGGGAAGCG GGAGCTGCGG GCCTTGGCTG TGAGCTTGGC CAGGCTATTT CCTGCTGCCT 004720 004721 CCGGAGGGGT GACCACGGCC TGGGCTCAGA GACTGCCCAG CCCCCTCTGC AGGACTGGCC AGGCTGGGGC CCGCTTTCTG 004800 004801 GCCCCTGGAA CCCTCCATTT GCTGGGGGAC TGTCCCCTGG TTCCCCCATC TGATGCGCAG GTCTGGGAGT CTGTCACCCC 004880 004881 CCTCCCCCAA TCTCGGCCCA TGGAGGAGCA GGGGAGGTAA AGTACCTGAC ACCTGTTACC CTCCCCTTCC CGGAAAGGCC 004960 004961 GCGAGCAGGC TGTGCCTCTG GCATTCTGTG GGATCAGGGG CAGCAGCAGA AGAAAGAAGT AACCTCCCAA GCTGACCCTG 005040 005041 ACCCAGCCCC ACACTCTGTG TTAATGTATT TAGTCTGTGC AACGGGAGCT ACTGTCTCTG TTTTATAGAT GGGGAAACTG 005120 005121 AAGCACGAGG AGGCTGAGAC TTGCCCCAAA TCACAGCCAG CAATGTAAGA GCTGGCCTCA GACCCAGGCC CAGGGCATGG 005200 005201 GATCTGCCAC ATGTCCCCTG CCTGGAGGCT GGGGGCCAAG CTTCCTGGAC TTCAGAGCCT TGG |
Predicted Small Protein
Name | NONHSAT081013_smProtein_2978:3214 |
Length | 79 |
Molecular weight | 8311.6862 |
Aromaticity | 0.0641025641026 |
Instability index | 56.7320512821 |
Isoelectric point | 9.60748291016 |
Runs | 9 |
Runs residual | 0.0182926829268 |
Runs probability | 0.0402755696873 |
Amino acid sequence | MGMAMSETGCTGTTSYCTPKSLQTSPTRAVRGWWGALLCAVLRVLHPLLAPLPRGPQSQA LLTLGLPPLSPDGFFRTQ |
Secondary structure | LLLEELLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLHHHH HHHLLLLLLLLLLLEELL |
PRMN | - |
PiMo | - |